ClCG01G015260 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G015260
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr01 : 29507567 .. 29507890 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGATGTGGAAACAAATTGGGGTCCCTTAGAAGTGATTGAGGATATCGATGTGTATGAAGTGCAAGAAGTTGGATGCAATGCAGTAAATCTGCATAATGAGAAACAAACGGACAATTTGATTTTCCTTCATGTGGTGAACGGTCTGAAACAGATTAGCGATAATGGCTATATTCATAGGTATATTGTTGTGGTAAAAGTTAAAAATGCGAATGGAATTGTGTGGACATATGTGGTTAACATAGAGGTGAATCCTGATTTTCGACCATGGCCACTGTATACGCTCATATCTTTTGAAGATCCCCTCAAGTTCTACAACTAG

mRNA sequence

ATGAGTGATGTGGAAACAAATTGGGGTCCCTTAGAAGTGATTGAGGATATCGATGTGTATGAAGTGCAAGAAGTTGGATGCAATGCAGTAAATCTGCATAATGAGAAACAAACGGACAATTTGATTTTCCTTCATGTGGTGAACGGTCTGAAACAGATTAGCGATAATGGCTATATTCATAGGTATATTGTTGTGGTAAAAGTTAAAAATGCGAATGGAATTGTGTGGACATATGTGGTTAACATAGAGGTGAATCCTGATTTTCGACCATGGCCACTGTATACGCTCATATCTTTTGAAGATCCCCTCAAGTTCTACAACTAG

Coding sequence (CDS)

ATGAGTGATGTGGAAACAAATTGGGGTCCCTTAGAAGTGATTGAGGATATCGATGTGTATGAAGTGCAAGAAGTTGGATGCAATGCAGTAAATCTGCATAATGAGAAACAAACGGACAATTTGATTTTCCTTCATGTGGTGAACGGTCTGAAACAGATTAGCGATAATGGCTATATTCATAGGTATATTGTTGTGGTAAAAGTTAAAAATGCGAATGGAATTGTGTGGACATATGTGGTTAACATAGAGGTGAATCCTGATTTTCGACCATGGCCACTGTATACGCTCATATCTTTTGAAGATCCCCTCAAGTTCTACAACTAG

Protein sequence

MSDVETNWGPLEVIEDIDVYEVQEVGCNAVNLHNEKQTDNLIFLHVVNGLKQISDNGYIHRYIVVVKVKNANGIVWTYVVNIEVNPDFRPWPLYTLISFEDPLKFYN

Homology

[Close]

BLAST of ClCG01G015260 vs. TrEMBL
Match: A0A0A0LVH4_CUCSA (Cystatin Hv-CPI6 OS=Cucumis sativus GN=Csa_1G123470 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 1


Query: 9   GPLEVIEDIDVYEVQEVGCNAVNLHNEKQTDNLIFLHVVNGLKQISDNGYIHRYIVVVKV 68
           G  E I+D++  EV+     AV +HN+++ D L+F+ VVNGLKQ  D   +  Y ++++ 
Sbjct: 2   GRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKL--YSLLIEA 61

Query: 69  KNANGIVWTYVVNIEVNP----DFRPWP-LYTLISFEDPLKFYN 108
            N +G  W Y+  I++ P     + P+   + LIS+EDPLKF+N
Sbjct: 62  TNGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN 103

[Close]

BLAST of ClCG01G015260 vs. TrEMBL
Match: A0A0A0KNL2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487700 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-06
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 14 IEDIDVYEVQEVGCNAVNLHNEKQT-DNLIFLHVVNGLKQISDNGYIHRYIVVVKVKNAN 73
          I+D+D  E+Q +G  AV +HNE  T +NL F+ V+NGL++    G+   Y +V+  KN+ 
Sbjct: 23 IKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEK-GRRGFQIVYTLVLSAKNSL 82

Query: 74 GIVWTYVVNIEVN 86
          GIVWTY   +  N
Sbjct: 83 GIVWTYKAKVIFN 94

[Close]

BLAST of ClCG01G015260 vs. NCBI nr
Match: gi|700209736|gb|KGN64832.1| (Cystatin Hv-CPI6 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 1


Query: 9   GPLEVIEDIDVYEVQEVGCNAVNLHNEKQTDNLIFLHVVNGLKQISDNGYIHRYIVVVKV 68
           G  E I+D++  EV+     AV +HN+++ D L+F+ VVNGLKQ  D   +  Y ++++ 
Sbjct: 2   GRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKL--YSLLIEA 61

Query: 69  KNANGIVWTYVVNIEVNP----DFRPWP-LYTLISFEDPLKFYN 108
            N +G  W Y+  I++ P     + P+   + LIS+EDPLKF+N
Sbjct: 62  TNGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN 103

The following BLAST results are available for this feature:

BLAST of ClCG01G015260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVH4_CUCSA	1.1e-09	37.50	Cystatin Hv-CPI6 OS=Cucumis sativus GN=Csa_1G123470 PE=4 SV=1	[more]
A0A0A0KNL2_CUCSA	7.3e-06	42.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G487700 PE=4 SV=1	[more]

BLAST of ClCG01G015260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209736\|gb\|KGN64832.1\|	1.6e-09	37.50	Cystatin Hv-CPI6 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020381	Proteinase inhibitor I25, cystatin, conserved region

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G015260.1	ClCG01G015260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020381	Proteinase inhibitor I25, cystatin, conserved region	PFAM	PF16845	SQAPI	coord: 14..79 score: 5.
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 17..71 score: 6.
None	No IPR available	unknown	SSF54403	Cystatin/monellin	coord: 9..90 score: 9.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G015260	Cla008421	Watermelon (97103) v1	wcgwmB153
ClCG01G015260	Cla97C01G014230	Watermelon (97103) v2	wcgwmbB089
ClCG01G015260	Bhi03G001353	Wax gourd	wcgwgoB229
ClCG01G015260	CSPI06G25910	Wild cucumber (PI 183967)	cpiwcgB454

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G015260	Bottle gourd (USVL1VR-Ls)	lsiwcgB127
ClCG01G015260	Cucumber (Gy14) v2	cgybwcgB399
ClCG01G015260	Melon (DHL92) v3.6.1	medwcgB511
ClCG01G015260	Silver-seed gourd	carwcgB0230
ClCG01G015260	Silver-seed gourd	carwcgB0778
ClCG01G015260	Cucumber (Chinese Long) v3	cucwcgB455
ClCG01G015260	Wax gourd	wcgwgoB225
ClCG01G015260	Cucumber (Gy14) v1	cgywcgB134
ClCG01G015260	Cucurbita maxima (Rimu)	cmawcgB754
ClCG01G015260	Cucurbita maxima (Rimu)	cmawcgB579
ClCG01G015260	Cucurbita moschata (Rifu)	cmowcgB755
ClCG01G015260	Cucurbita moschata (Rifu)	cmowcgB575
ClCG01G015260	Wild cucumber (PI 183967)	cpiwcgB453
ClCG01G015260	Cucumber (Chinese Long) v2	cuwcgB432
ClCG01G015260	Melon (DHL92) v3.5.1	mewcgB516
ClCG01G015260	Cucurbita pepo (Zucchini)	cpewcgB061
ClCG01G015260	Cucurbita pepo (Zucchini)	cpewcgB425