ClCG01G013930 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G013930
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=227
Location	CG_Chr01 : 28024842 .. 28026197 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGCACTACTACACAAGGAGAAGCATCATCAAAACAAAGCTCCTATAGGCAACAAAATGGGACAGCAAAACGCACAAGACTCATAAGAATCATAGGAAGAAGCTTGTTGAGTGTAATATTCCTTGTTGCTCTTGCAATTATCATATGTTGGCTTGTTGTTTTCCCTAAAACCCCACGTCTCGTTGTGGAAACCGGCAAAGTCACACCCCATACTTCAACTCATAATTTGCTCAATGCCACCATAGCTTTCACTTTCAAAACCTATAACCCCAACAAAAGAGCCTCCATTCACATGGCTTCTATGAGGATGATAGTCACTAGCATGGGCCAGAGGTTTTCCTCCGCCATCCCCACGTTCACGCTCACTCCCGGAAACCAGACCGCCTTGTCCTCCGCCGCCCTAGTCAACTTCGAATACCCGTTTGGGTACAGGGAAGAGATAGATCCAGAGCTTCACTTCTCAGCTGAAGTCAGGTATAAACATTATTTGACTTTTGAGACAAATGTATATAACATACCAATGTTGTTAGGTTTTGTTGACGCCAATTTTTTTTTCTTTTTTTCACTCAAAAATTATAATTTGGTTGGGAGTTCAACGAATAAATTGGTTGGATTTACGTTAGCTTTAACCTCAATAACTAACATCATAACCATTTTAACTTTATGTATTTAGATTTTGAAAATTAATTACTAACCTCCCATGGTAACCATTCCATATATGATTGGATTTTGGAAATTAGGTCTATTTTTAATTTGCACCTTTTAAATATAAGAGTTTATTTCTTAACCAAATTTCAAATTTTAAAAACTATTTTTTTTTGGTTATTAGTTATTGGTTTGTGAAAATTAAGTCTATTTTTAATTTGCACCTTTTAAATATAAGAGTTGATTTCTTAACCAAATTCTAAATTTTAAAAACTACTTTTTTTTAGTTTTCAAAATTTAACTTAAATTTTTAAAATCTTGGTAAAAAAGTGTATAACAATTCAAGAAATTTAGAAGTAGAATAAGTGTTTATATTTAGGTTTAATTTTCAAAAACCAAATGGTTACCAAATAGGGCTAACCTTGTGGATAGTATGTCCAAACATAAATTTCTTTCTTTTGTTATCTACTTTTTAAGAGTGTTTCAAAAATCTTAACCTATTTTAAACCTCAAAAAAGTTGTATTTTAAATTCTTTCTTGTTCTAATTTTTTTTTTTTTTCCTTTTTGTCTTTGTCCCATATCAGTTACAGTGTCGAGAGATGGACATCGAAACCCCGTTTGCTGGAAATCTATTGTAACCGCCTCTTGCTTAAGATCAATGGTTCTACAACTTTTGATAACACCAAATGCAAAGTGGATCTTTGA

mRNA sequence

ATGAGGAGCACTACTACACAAGGAGAAGCATCATCAAAACAAAGCTCCTATAGGCAACAAAATGGGACAGCAAAACGCACAAGACTCATAAGAATCATAGGAAGAAGCTTGTTGAGTGTAATATTCCTTGTTGCTCTTGCAATTATCATATGTTGGCTTGTTGTTTTCCCTAAAACCCCACGTCTCGTTGTGGAAACCGGCAAAGTCACACCCCATACTTCAACTCATAATTTGCTCAATGCCACCATAGCTTTCACTTTCAAAACCTATAACCCCAACAAAAGAGCCTCCATTCACATGGCTTCTATGAGGATGATAGTCACTAGCATGGGCCAGAGGTTTTCCTCCGCCATCCCCACGTTCACGCTCACTCCCGGAAACCAGACCGCCTTGTCCTCCGCCGCCCTAGTCAACTTCGAATACCCGTTTGGGTACAGGGAAGAGATAGATCCAGAGCTTCACTTCTCAGCTGAAGTCAGTTACAGTGTCGAGAGATGGACATCGAAACCCCGTTTGCTGGAAATCTATTGTAACCGCCTCTTGCTTAAGATCAATGGTTCTACAACTTTTGATAACACCAAATGCAAAGTGGATCTTTGA

Coding sequence (CDS)

ATGAGGAGCACTACTACACAAGGAGAAGCATCATCAAAACAAAGCTCCTATAGGCAACAAAATGGGACAGCAAAACGCACAAGACTCATAAGAATCATAGGAAGAAGCTTGTTGAGTGTAATATTCCTTGTTGCTCTTGCAATTATCATATGTTGGCTTGTTGTTTTCCCTAAAACCCCACGTCTCGTTGTGGAAACCGGCAAAGTCACACCCCATACTTCAACTCATAATTTGCTCAATGCCACCATAGCTTTCACTTTCAAAACCTATAACCCCAACAAAAGAGCCTCCATTCACATGGCTTCTATGAGGATGATAGTCACTAGCATGGGCCAGAGGTTTTCCTCCGCCATCCCCACGTTCACGCTCACTCCCGGAAACCAGACCGCCTTGTCCTCCGCCGCCCTAGTCAACTTCGAATACCCGTTTGGGTACAGGGAAGAGATAGATCCAGAGCTTCACTTCTCAGCTGAAGTCAGTTACAGTGTCGAGAGATGGACATCGAAACCCCGTTTGCTGGAAATCTATTGTAACCGCCTCTTGCTTAAGATCAATGGTTCTACAACTTTTGATAACACCAAATGCAAAGTGGATCTTTGA

Protein sequence

MRSTTTQGEASSKQSSYRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVVFPKTPRLVVETGKVTPHTSTHNLLNATIAFTFKTYNPNKRASIHMASMRMIVTSMGQRFSSAIPTFTLTPGNQTALSSAALVNFEYPFGYREEIDPELHFSAEVSYSVERWTSKPRLLEIYCNRLLLKINGSTTFDNTKCKVDL

Homology

[Close]

BLAST of ClCG01G013930 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-07
Identity = 35/111 (31.53%), Postives = 55/111 (49.55%), Query Frame = 1


Query: 17  YRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVVFPKTPRLVVETGKVT--PHTS 76
           YR+ +G      L+ +  + ++S+I ++ +A +I WL+V P+  +  V    +T   HTS
Sbjct: 25  YRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTS 84

Query: 77  THNLLNATIAFTFKTYNPNKRASIHMASMRMIVTSMGQRFSSAIPTFTLTP 126
             N+L   +A T    NPNKR  ++   +       G+RFS    T TLTP
Sbjct: 85  PDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFS----TITLTP 131

[Close]

BLAST of ClCG01G013930 vs. TrEMBL
Match: A0A0A0LVK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132770 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.7e-78
Identity = 145/197 (73.60%), Postives = 166/197 (84.26%), Query Frame = 1


Query: 3   STTTQGEASSKQSSYRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVVFPKTPRL 62
           STT +GEASS + S + QN T K+TR+IRIIGRSLLSVIFLV LA++ICWLVVFPK PR+
Sbjct: 4   STTAKGEASSSKKSSKGQNETTKKTRIIRIIGRSLLSVIFLVGLAMVICWLVVFPKNPRI 63

Query: 63  VVETGKVTPHTSTHNLLNATIAFTFKTYNPNKRASIHMASMRMIVTSMGQRFSSAIPTFT 122
            VETG+V  H STHN+LNATI FT K YNPNKRAS+H+ SMRMIVTSMGQ FSS IPTF 
Sbjct: 64  FVETGRVIAHNSTHNMLNATIVFTVKCYNPNKRASVHLHSMRMIVTSMGQAFSSVIPTFM 123

Query: 123 LTPGNQTALSSAALVNFEYPFGYREEIDPELHFSAEVSYSVERWTSKPRLLEIYCNRLLL 182
            TPGNQT LS A  VNF+YPFG++EEI+PELHFSAE+SYSVE WTS+PRLL IYCN LLL
Sbjct: 124 QTPGNQTVLSPAVEVNFDYPFGHQEEINPELHFSAEISYSVEHWTSRPRLLLIYCNNLLL 183

Query: 183 KINGSTTFDNTKCKVDL 200
           +IN + TF+NTKC VDL
Sbjct: 184 RINDTRTFENTKCNVDL 200

[Close]

BLAST of ClCG01G013930 vs. TrEMBL
Match: A0A0A0LY09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132760 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.0e-73
Identity = 144/198 (72.73%), Postives = 161/198 (81.31%), Query Frame = 1


Query: 1   MRSTTTQGEASSKQSSYRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVVFPKTP 60
           MRSTTT              +G  KRTRLIR++GRSLL VIFLVAL +IICWLVV PK+P
Sbjct: 1   MRSTTTT-----------TTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSP 60

Query: 61  RLVVETGKVTPHTSTHNLLNATIAFTFKTYNPNKRASIHMASMRMIVTSMGQRFSSAIPT 120
           RL+VETGKV  H+ST ++LNATIAFT K+YNPNKRASIHM  MRMIV +MG RFSSAIP+
Sbjct: 61  RLIVETGKVIAHSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPS 120

Query: 121 FTLTPGNQTALSSAALVNFEYPFGYREEIDPELHFSAEVSYSVERWTSKPRLLEIYCNRL 180
           FTLTP NQT LSSA  VNFEYPFGY EEI+PEL FSAEVSYS+++W SKPRLLEIYCN +
Sbjct: 121 FTLTPRNQTVLSSAVQVNFEYPFGYTEEINPELQFSAEVSYSIKKWMSKPRLLEIYCNHI 180

Query: 181 LLKINGSTTFDNTKCKVD 199
           LLKIN ST FDNTKCKVD
Sbjct: 181 LLKINDSTAFDNTKCKVD 187

[Close]

BLAST of ClCG01G013930 vs. TrEMBL
Match: A0A0A0LSU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132730 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.8e-59
Identity = 128/210 (60.95%), Postives = 153/210 (72.86%), Query Frame = 1


Query: 1   MRSTTTQGEASSK------QSSYRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLV 60
           MRSTTTQGE +S       + S+ +Q  T KRTR+IRIIGRSLLSVI  +++AII CWLV
Sbjct: 1   MRSTTTQGEGASSSIIEAPKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLV 60

Query: 61  VFPKTPRLVVETGKVTPHTSTHNLLNATIAFTFKTYNPNKRASIHMASMRMIVTS-MGQR 120
           VFP+TPRL+VET KVT H ST+  LNATI F  K+YNPNK+ASIHM S++MIV+  MG  
Sbjct: 61  VFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLP 120

Query: 121 FSSAIPTFTLTPGNQTALSSAALVNFEYPFG---YREEIDPELHFSAEVSYSVERWTSKP 180
           F S IPTFTL P N+   +S   VNF YPFG   + + +  EL FSA+VSY V RW SKP
Sbjct: 121 FHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKP 180

Query: 181 RLLEIYCNRLLLKINGST-TFDNTKCKVDL 200
           RLLEIYC+ L L+IN ST  FD TKC+VDL
Sbjct: 181 RLLEIYCDHLWLRINDSTPNFDKTKCRVDL 210

[Close]

BLAST of ClCG01G013930 vs. TrEMBL
Match: A0A0A0LSV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G134270 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 122/212 (57.55%), Postives = 153/212 (72.17%), Query Frame = 1


Query: 1   MRSTTTQGE-------ASSKQSSYRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWL 60
           MRS    GE       +SSK+ SY  ++GTAKRTR++RI GR+LL ++ LVA+A+IICWL
Sbjct: 1   MRSNGKAGEPPPPPSSSSSKEMSYVIKHGTAKRTRVLRITGRTLLGLMILVAIAMIICWL 60

Query: 61  VVFPKTPRLVVETGKVTPHTSTHNLLNATIAFTFKTYNPNKRASIHMASMRMIVTSMGQR 120
           +VFP+ P ++VETG+V PH+ T   LNATIAFT  +YNPNK+ASI M SMRMIV+ MG  
Sbjct: 61  IVFPRNPDIIVETGQVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVSDMGLS 120

Query: 121 FSSAIPTFTLTPGNQTALSSAALVNFEYPFGYREE------IDPELHFSAEVSYSVERWT 180
           F S IP+FT  P N+T L+S    NF YPFG+ +E      I PEL FSA+VSY +ERWT
Sbjct: 121 FWSDIPSFTQPPKNKTVLTSTIQGNFIYPFGHMKELMKLEGISPELRFSAKVSYIMERWT 180

Query: 181 SKPRLLEIYCNRLLLKINGSTTFDNTKCKVDL 200
           S+ RL+E+YC+ L LK N ST FDN KCKVDL
Sbjct: 181 SRDRLVEVYCDSLRLKFNDSTVFDNKKCKVDL 212

[Close]

BLAST of ClCG01G013930 vs. TrEMBL
Match: A0A0A0LV68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132740 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.4e-50
Identity = 117/209 (55.98%), Postives = 144/209 (68.90%), Query Frame = 1


Query: 3   STTTQGEASS-------KQSSYRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVV 62
           +TTTQGEASS       K+ +YRQ +G AKRTR+IRIIGRSLL  I L+ +AI+ CW VV
Sbjct: 8   TTTTQGEASSSSIIRAPKRGAYRQ-HGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVV 67

Query: 63  FPKTPRLVVETGKVTPHTSTHNLLNATIAFTFKTYNPNKRASIHMASMRMIVTS-MGQRF 122
            P+TP+L+VE+G+VT + ST   LNATI F  ++YNPNKRASI++ SM+M V + M   F
Sbjct: 68  IPRTPQLMVESGQVTGYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPF 127

Query: 123 SSAIPTFTLTPGNQTALSSAALVNFEYPFG---YREEIDPELHFSAEVSYSVERWTSKPR 182
            S IP FT+TP N T L+   LVN  YPFG   +   I  EL FSA+VSY   RW SKPR
Sbjct: 128 HSDIPNFTMTPRNMTVLTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPR 187

Query: 183 LLEIYCNRLLLKINGS-TTFDNTKCKVDL 200
           L+EIYCN    KI+ S   FDN KC+VDL
Sbjct: 188 LMEIYCNHFWFKIDDSMPNFDNIKCQVDL 215

[Close]

BLAST of ClCG01G013930 vs. TAIR10
Match: AT2G35980.1 (AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 35/111 (31.53%), Postives = 55/111 (49.55%), Query Frame = 1


Query: 17  YRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVVFPKTPRLVVETGKVT--PHTS 76
           YR+ +G      L+ +  + ++S+I ++ +A +I WL+V P+  +  V    +T   HTS
Sbjct: 25  YRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTS 84

Query: 77  THNLLNATIAFTFKTYNPNKRASIHMASMRMIVTSMGQRFSSAIPTFTLTP 126
             N+L   +A T    NPNKR  ++   +       G+RFS    T TLTP
Sbjct: 85  PDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFS----TITLTP 131

[Close]

BLAST of ClCG01G013930 vs. TAIR10
Match: AT4G01410.1 (AT4G01410.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 52.0 bits (123), Expect = 4.9e-07
Identity = 35/129 (27.13%), Postives = 61/129 (47.29%), Query Frame = 1


Query: 10  ASSKQSSYRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVVFPKTPRLVVETGKV 69
           ASS   SY ++ G         I G ++ +++ ++ +  +I WLV  P  PRL V    +
Sbjct: 22  ASSTPESYSKEGGGGGGDARRAICG-AIFTILVILGIIALILWLVYRPHKPRLTVVGAAI 81

Query: 70  TPHTSTHN-LLNATIAFTFKTYNPNKRASIHMASMRMIVTSMGQRFSSAIPTFTLTPGNQ 129
                T   L++ ++ F+    NPN+R SIH   + M VT   Q  +  +P   L  G++
Sbjct: 82  YDLNFTAPPLISTSVQFSVLARNPNRRVSIHYDKLSMYVTYKDQIITPPLPLPPLRLGHK 141

Query: 130 TALSSAALV 138
           + +  A ++
Sbjct: 142 STVVIAPVM 149

[Close]

BLAST of ClCG01G013930 vs. TAIR10
Match: AT3G11660.1 (AT3G11660.1 NDR1/HIN1-like 1)

HSP 1 Score: 50.1 bits (118), Expect = 1.9e-06
Identity = 29/105 (27.62%), Postives = 51/105 (48.57%), Query Frame = 1


Query: 20  QNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVVFPKTPRLVVETGKVTPHT---STH 79
           +N    R +LIR I  S++ V+F++ L I++ W ++ P  PR +++   V       +  
Sbjct: 5   ENHGHSRRKLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSGNPP 64

Query: 80  NLLNATIAFTFKTYNPNKRASIHMASMRMIVTSMGQR--FSSAIP 120
           NLL +    T  + NPN +  I+   + +  T   Q+  F ++IP
Sbjct: 65  NLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIP 109

[Close]

BLAST of ClCG01G013930 vs. NCBI nr
Match: gi|659071873|ref|XP_008462337.1| (PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.3e-78
Identity = 149/200 (74.50%), Postives = 169/200 (84.50%), Query Frame = 1


Query: 1   MRS-TTTQGEASSKQSSYRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVVFPKT 60
           MRS TTT+GEASS + S + QN T K+TR+IRIIGR LLSVIFLV LA++ICWLVVFPK 
Sbjct: 1   MRSITTTKGEASSSRKSSKGQNETTKKTRIIRIIGRCLLSVIFLVGLAMVICWLVVFPKN 60

Query: 61  PRLVVETGKVTPHTSTHNLLNATIAFTFKTYNPNKRASIHMASMRMIVTSMGQRFSSAIP 120
           PR VVETGKV  H STHN+LNATIAFT K YNPNKRASIH+ SMRMI+TSMGQ FSSA+P
Sbjct: 61  PRFVVETGKVIAHNSTHNMLNATIAFTVKCYNPNKRASIHLHSMRMIITSMGQAFSSAMP 120

Query: 121 TFTLTPGNQTALSSAALVNFEYPFGYREEIDPELHFSAEVSYSVERWTSKPRLLEIYCNR 180
            F  TPGNQT LS A  VNF+YPFG+REEI+PELHFSAE+SYSV  WTS+PRLL+IYCN 
Sbjct: 121 MFMQTPGNQTVLSPAVDVNFDYPFGHREEINPELHFSAEISYSVGHWTSRPRLLQIYCNN 180

Query: 181 LLLKINGSTTFDNTKCKVDL 200
           LLL+IN + TF+NTKC VDL
Sbjct: 181 LLLRINDTRTFENTKCNVDL 200

[Close]

BLAST of ClCG01G013930 vs. NCBI nr
Match: gi|778664980|ref|XP_011648454.1| (PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 3.9e-78
Identity = 145/197 (73.60%), Postives = 166/197 (84.26%), Query Frame = 1


Query: 3   STTTQGEASSKQSSYRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVVFPKTPRL 62
           STT +GEASS + S + QN T K+TR+IRIIGRSLLSVIFLV LA++ICWLVVFPK PR+
Sbjct: 4   STTAKGEASSSKKSSKGQNETTKKTRIIRIIGRSLLSVIFLVGLAMVICWLVVFPKNPRI 63

Query: 63  VVETGKVTPHTSTHNLLNATIAFTFKTYNPNKRASIHMASMRMIVTSMGQRFSSAIPTFT 122
            VETG+V  H STHN+LNATI FT K YNPNKRAS+H+ SMRMIVTSMGQ FSS IPTF 
Sbjct: 64  FVETGRVIAHNSTHNMLNATIVFTVKCYNPNKRASVHLHSMRMIVTSMGQAFSSVIPTFM 123

Query: 123 LTPGNQTALSSAALVNFEYPFGYREEIDPELHFSAEVSYSVERWTSKPRLLEIYCNRLLL 182
            TPGNQT LS A  VNF+YPFG++EEI+PELHFSAE+SYSVE WTS+PRLL IYCN LLL
Sbjct: 124 QTPGNQTVLSPAVEVNFDYPFGHQEEINPELHFSAEISYSVEHWTSRPRLLLIYCNNLLL 183

Query: 183 KINGSTTFDNTKCKVDL 200
           +IN + TF+NTKC VDL
Sbjct: 184 RINDTRTFENTKCNVDL 200

[Close]

BLAST of ClCG01G013930 vs. NCBI nr
Match: gi|659071875|ref|XP_008462348.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 2.6e-74
Identity = 143/179 (79.89%), Postives = 156/179 (87.15%), Query Frame = 1


Query: 21  NGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVVFPKTPRLVVETGKVTPHTSTHNLLN 80
           +G  KRTRLIR++GRSLL VIFLVAL +IICWLVV PKTPRL+VETGKV  H+ST ++LN
Sbjct: 10  HGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLN 69

Query: 81  ATIAFTFKTYNPNKRASIHMASMRMIVTSMGQRFSSAIPTFTLTPGNQTALSSAALVNFE 140
           ATIAFT K+YNPNKRASIHM  MRMIV +MG RFSSAIP+FTLTP NQT L SA  VNFE
Sbjct: 70  ATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLWSAVQVNFE 129

Query: 141 YPFGYREEIDPELHFSAEVSYSVERWTSKPRLLEIYCNRLLLKINGSTTFDNTKCKVDL 200
           YPFGY EEI+PEL FSAEVSYSVE+W SKPRLLEIYCN LLLKIN STTFDNTKCKVDL
Sbjct: 130 YPFGYTEEINPELQFSAEVSYSVEKWMSKPRLLEIYCNHLLLKINDSTTFDNTKCKVDL 188

[Close]

BLAST of ClCG01G013930 vs. NCBI nr
Match: gi|778659286|ref|XP_011654134.1| (PREDICTED: protein YLS9-like isoform X2 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 2.9e-73
Identity = 144/198 (72.73%), Postives = 161/198 (81.31%), Query Frame = 1


Query: 1   MRSTTTQGEASSKQSSYRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVVFPKTP 60
           MRSTTT              +G  KRTRLIR++GRSLL VIFLVAL +IICWLVV PK+P
Sbjct: 1   MRSTTTT-----------TTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSP 60

Query: 61  RLVVETGKVTPHTSTHNLLNATIAFTFKTYNPNKRASIHMASMRMIVTSMGQRFSSAIPT 120
           RL+VETGKV  H+ST ++LNATIAFT K+YNPNKRASIHM  MRMIV +MG RFSSAIP+
Sbjct: 61  RLIVETGKVIAHSSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPS 120

Query: 121 FTLTPGNQTALSSAALVNFEYPFGYREEIDPELHFSAEVSYSVERWTSKPRLLEIYCNRL 180
           FTLTP NQT LSSA  VNFEYPFGY EEI+PEL FSAEVSYS+++W SKPRLLEIYCN +
Sbjct: 121 FTLTPRNQTVLSSAVQVNFEYPFGYTEEINPELQFSAEVSYSIKKWMSKPRLLEIYCNHI 180

Query: 181 LLKINGSTTFDNTKCKVD 199
           LLKIN ST FDNTKCKVD
Sbjct: 181 LLKINDSTAFDNTKCKVD 187

[Close]

BLAST of ClCG01G013930 vs. NCBI nr
Match: gi|659071871|ref|XP_008462326.1| (PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 4.3e-61
Identity = 126/208 (60.58%), Postives = 154/208 (74.04%), Query Frame = 1


Query: 1   MRSTTTQGEASS---KQSSYRQQNGTAKRTRLIRIIGRSLLSVIFLVALAIIICWLVVFP 60
           MRS  TQGE SS   K+ SY +++G AKRTR++RI GR+LL ++ LVA+A+IICWL+VFP
Sbjct: 1   MRSIATQGEPSSSSAKEISYVEKHGAAKRTRVLRITGRTLLGLMILVAIAMIICWLIVFP 60

Query: 61  KTPRLVVETGKVTPHTSTHNLLNATIAFTFKTYNPNKRASIHMASMRMIVTSMGQRFSSA 120
           + P L+VETGKV PH+ T   LNATIAFT  +YNPNK+ASI M SMRMIVT MG  F S 
Sbjct: 61  RNPDLIVETGKVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVTDMGLSFWSD 120

Query: 121 IPTFTLTPGNQTALSSAALVNFEYPFGYREE------IDPELHFSAEVSYSVERWTSKPR 180
           IP+FT  P N+T L+S    NF YPFG+ +E      I P+L FSA+VSY +ERWTS+ R
Sbjct: 121 IPSFTQPPKNKTVLNSTIQGNFIYPFGHMKELVKLEGISPDLRFSAKVSYIMERWTSRGR 180

Query: 181 LLEIYCNRLLLKINGSTTFDNTKCKVDL 200
           LLE+YC+ L LK N ST FDN KCKVDL
Sbjct: 181 LLEVYCDSLRLKFNDSTVFDNKKCKVDL 208

The following BLAST results are available for this feature:

BLAST of ClCG01G013930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLS9_ARATH	2.1e-07	31.53	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]

BLAST of ClCG01G013930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVK9_CUCSA	2.7e-78	73.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132770 PE=4 SV=1	[more]
A0A0A0LY09_CUCSA	2.0e-73	72.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132760 PE=4 SV=1	[more]
A0A0A0LSU5_CUCSA	4.8e-59	60.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132730 PE=4 SV=1	[more]
A0A0A0LSV0_CUCSA	1.4e-58	57.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G134270 PE=4 SV=1	[more]
A0A0A0LV68_CUCSA	2.4e-50	55.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132740 PE=4 SV=1	[more]

BLAST of ClCG01G013930 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35980.1	1.2e-08	31.53	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT4G01410.1	4.9e-07	27.13	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G11660.1	1.9e-06	27.62	NDR1/HIN1-like 1	[more]

BLAST of ClCG01G013930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071873\|ref\|XP_008462337.1\|	1.3e-78	74.50	PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo]	[more]
gi\|778664980\|ref\|XP_011648454.1\|	3.9e-78	73.60	PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus]	[more]
gi\|659071875\|ref\|XP_008462348.1\|	2.6e-74	79.89	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|778659286\|ref\|XP_011654134.1\|	2.9e-73	72.73	PREDICTED: protein YLS9-like isoform X2 [Cucumis sativus]	[more]
gi\|659071871\|ref\|XP_008462326.1\|	4.3e-61	60.58	PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G013930.1	ClCG01G013930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 25..199 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G013930	Silver-seed gourd	carwcgB0160
ClCG01G013930	Cucumber (Chinese Long) v3	cucwcgB016
ClCG01G013930	Watermelon (97103) v2	wcgwmbB089
ClCG01G013930	Wax gourd	wcgwgoB243
ClCG01G013930	Cucumber (Gy14) v1	cgywcgB371
ClCG01G013930	Cucurbita maxima (Rimu)	cmawcgB154
ClCG01G013930	Cucurbita maxima (Rimu)	cmawcgB181
ClCG01G013930	Cucurbita moschata (Rifu)	cmowcgB142
ClCG01G013930	Cucurbita moschata (Rifu)	cmowcgB172
ClCG01G013930	Wild cucumber (PI 183967)	cpiwcgB017
ClCG01G013930	Cucumber (Chinese Long) v2	cuwcgB014
ClCG01G013930	Melon (DHL92) v3.5.1	mewcgB131
ClCG01G013930	Watermelon (97103) v1	wcgwmB150
ClCG01G013930	Watermelon (97103) v1	wcgwmB156
ClCG01G013930	Cucurbita pepo (Zucchini)	cpewcgB455
ClCG01G013930	Cucurbita pepo (Zucchini)	cpewcgB727
ClCG01G013930	Bottle gourd (USVL1VR-Ls)	lsiwcgB230
ClCG01G013930	Cucumber (Gy14) v2	cgybwcgB014
ClCG01G013930	Melon (DHL92) v3.6.1	medwcgB127