ClCG01G013790 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G013790
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
LocationCG_Chr01 : 27611684 .. 27612250 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGACTAATTATGTGATGGCGTATCTCAATGAGTTTTGGGAGGCTCAGGTGGCTTTGGTGTTTTCGACTCCTTTTTTTTATGTGAATCTGTAGGTTGTTGGTATTTCTCTGGTTTGGTCGTCACCACCGAATGGGGAGTTCAAACTCAACACTGATGTTGCATGCTGTCCTGATTTGATAAGAGTAGGGATGAGAGCAGTGATTAGAGATTCCGATGGATCGATGGTTTTAGCTATTGTTGAGTGGATTCCAAATGGTGTTCTAGCGTTGGAGGCAGAAGCTTTGGTTCTTTTGTTTCGCTTGAAGGTGGTGCATCAGATGGTTGTCCCGATTCTTCTGGTGGAAACAGATGCCCAGACGCTAATGAACATCATTAATGGCGAATCAAGGAAGTCTTCATCTATGGGGGTGATCCTTGAAGAAATCAAAACATGGATGAGGAAAGTTAATATTAAGAGCTTTATTTATATCCAAAGATCTTGTAATCAAGTGGCCCATAAATTGGCTTCTTGGGCTTGGGCTAATGGGGAAAAAGAGGTGTGGACTCATTGCTCTCCCTCTTAG

mRNA sequence

ATGTGGACTAATTATGTGATGGCGTATCTCAATGAGTTTTGGGAGGCTCAGGTTGTTGGTATTTCTCTGGTTTGGTCGTCACCACCGAATGGGGAGTTCAAACTCAACACTGATGTTGCATGCTGTCCTGATTTGATAAGAGTAGGGATGAGAGCAGTGATTAGAGATTCCGATGGATCGATGGTTTTAGCTATTGTTGAGTGGATTCCAAATGGTGTTCTAGCGTTGGAGGCAGAAGCTTTGGTTCTTTTGTTTCGCTTGAAGGTGGTGCATCAGATGGTTGTCCCGATTCTTCTGGTGGAAACAGATGCCCAGACGCTAATGAACATCATTAATGGCGAATCAAGGAAGTCTTCATCTATGGGGGTGATCCTTGAAGAAATCAAAACATGGATGAGGAAAGTTAATATTAAGAGCTTTATTTATATCCAAAGATCTTGTAATCAAGTGGCCCATAAATTGGCTTCTTGGGCTTGGGCTAATGGGGAAAAAGAGGTGTGGACTCATTGCTCTCCCTCTTAG

Coding sequence (CDS)

ATGTGGACTAATTATGTGATGGCGTATCTCAATGAGTTTTGGGAGGCTCAGGTTGTTGGTATTTCTCTGGTTTGGTCGTCACCACCGAATGGGGAGTTCAAACTCAACACTGATGTTGCATGCTGTCCTGATTTGATAAGAGTAGGGATGAGAGCAGTGATTAGAGATTCCGATGGATCGATGGTTTTAGCTATTGTTGAGTGGATTCCAAATGGTGTTCTAGCGTTGGAGGCAGAAGCTTTGGTTCTTTTGTTTCGCTTGAAGGTGGTGCATCAGATGGTTGTCCCGATTCTTCTGGTGGAAACAGATGCCCAGACGCTAATGAACATCATTAATGGCGAATCAAGGAAGTCTTCATCTATGGGGGTGATCCTTGAAGAAATCAAAACATGGATGAGGAAAGTTAATATTAAGAGCTTTATTTATATCCAAAGATCTTGTAATCAAGTGGCCCATAAATTGGCTTCTTGGGCTTGGGCTAATGGGGAAAAAGAGGTGTGGACTCATTGCTCTCCCTCTTAG

Protein sequence

MWTNYVMAYLNEFWEAQVVGISLVWSSPPNGEFKLNTDVACCPDLIRVGMRAVIRDSDGSMVLAIVEWIPNGVLALEAEALVLLFRLKVVHQMVVPILLVETDAQTLMNIINGESRKSSSMGVILEEIKTWMRKVNIKSFIYIQRSCNQVAHKLASWAWANGEKEVWTHCSPS
Homology
[Close]
BLAST of ClCG01G013790 vs. TrEMBL
Match: A0A0J8BAU9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g179330 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-12
Identity = 45/149 (30.20%), Postives = 75/149 (50.34%), Query Frame = 1 

Query: 25  WSSPPNGEFKLNTDVACCPDLIRVGMRAVIRDSDGSMVLAIVEWIPNGVLALEAEALVLL 84
           W  P  G  K+N D A   +  RVG+  V RD +G ++ A    + +   A +AEA  +L
Sbjct: 652 WLLPSPGFIKINVDAAVNGEYCRVGLGMVARDENGQVLRAWSRTMSHDWPAEKAEAAAVL 711

Query: 85  FRLKVVHQMVVPILLVETDAQTLMNIINGESRKSSSMGVILEEIKTWMRKVNIKSFIYIQ 144
           +  +         +++E+DAQ ++N IN   ++   +  +LE++   +       F +  
Sbjct: 712 WATEEAIAQGWSNVVLESDAQVIINAINSRLQRRGDIQAMLEDVLNLVPSFETIKFSFCY 771

Query: 145 RSCNQVAHKLASWAWANGEKEVWTHCSPS 174
           R CN++AH+LA WA +N   EVW    PS
Sbjct: 772 RECNEIAHRLAKWATSNFCDEVWLVGGPS 800

[Close]
BLAST of ClCG01G013790 vs. TrEMBL
Match: B9FIH0_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_19645 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 45/149 (30.20%), Postives = 71/149 (47.65%), Query Frame = 1 

Query: 25  WSSPPNGEFKLNTDVACCPDLIRVGMRAVIRDSDGSMVLAIVEWIPNGVLALEAEALVLL 84
           W  PP G  K+N D A      R G+  VIRD  G ++L+   ++     A EAE L   
Sbjct: 43  WQPPPEGWAKINVDGAFDQGDGRCGIGVVIRDCLGRVLLSSWRYLRRCSQAEEAELLACS 102

Query: 85  FRLKVVHQMVVPILLVETDAQTLMNIINGESRKSSSMGVILEEIKTWMRKVNIKSFIYIQ 144
             + +  + +   +++E+D       I G+  + S    +L EIK  +R++   S  ++ 
Sbjct: 103 EGINLAAEWIHLPVILESDCLMATTSIAGKDMERSRWTFLLREIKAAVRRLQEVSVHHVN 162

Query: 145 RSCNQVAHKLASWAWANGEKEVWTHCSPS 174
           R CN+VAH+LA  A       VW   +PS
Sbjct: 163 RECNRVAHELAQLAKRTAHCAVWRDQAPS 191

[Close]
BLAST of ClCG01G013790 vs. TrEMBL
Match: Q2QQB4_ORYSJ (Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os12g31630 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 47/143 (32.87%), Postives = 69/143 (48.25%), Query Frame = 1 

Query: 25  WSSPPNGEFKLNTDVACCPDLIRVGMRAVIRDSDGSMVLAIVEWIPNGVLALEAEALVLL 84
           W  P  G  K+NTD +C       G+ AV+RDS G +VLA+   I     ALEAE L   
Sbjct: 109 WVKPQGGWMKINTDGSCDSKNGNGGVGAVVRDSSGRVVLALSRHIDRCGSALEAELLACK 168

Query: 85  FRLKVVHQMVVPILLVETDAQTLMNIINGESRKSSSMGVILEEIKTWMRKVNIKSFIYIQ 144
             L +  Q  +  L++ETD    + ++  + +  S    I+ E  + ++      F   Q
Sbjct: 169 EGLSLALQYTLLPLVLETDCLEALKLLKSKEKVMSPEVFIIREANSLLQGNREIKFSKGQ 228

Query: 145 RSCNQVAHKLASWAWANGEKEVW 168
           RS N+V+H LA+ A      EVW
Sbjct: 229 RSQNRVSHLLANKARCEYVNEVW 251

[Close]
BLAST of ClCG01G013790 vs. TrEMBL
Match: C5XQ47_SORBI (Putative uncharacterized protein Sb03g006485 (Fragment) OS=Sorghum bicolor GN=Sb03g006485 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-08
Identity = 42/149 (28.19%), Postives = 65/149 (43.62%), Query Frame = 1 

Query: 25  WSSPPNGEFKLNTDVACCPDLIRVGMRA-VIRDSDGSMVLAIVEWIPNGVLALEAEALVL 84
           W  P +G  K N D A   D  R G    V+RD DG        W  + + AL  EA+  
Sbjct: 24  WRKPDSGWIKCNVD-ASFNDGDRTGATGMVLRDHDGQACGVSARWYEHSLNALATEAMAC 83

Query: 85  LFRLKVVHQMVVPILLVETDAQTLMNIINGESRKSSSMGVILEEIKTWMRKVNIKSFIYI 144
              ++   +  V  LLVETD Q L+N+    + + S +   + ++    R   + S  ++
Sbjct: 84  RDGMQFARERGVRKLLVETDCQVLVNLWENRAMQKSEIEPFMHQMAQLSRSFEVFSLCFV 143

Query: 145 QRSCNQVAHKLASWAWANGEKEVWTHCSP 173
            R+CN++AH+ A         E W    P
Sbjct: 144 SRNCNRLAHECAKLVSRGNPVEEWLLAPP 171

[Close]
BLAST of ClCG01G013790 vs. TrEMBL
Match: C5XQ55_SORBI (Putative uncharacterized protein Sb03g006560 OS=Sorghum bicolor GN=Sb03g006560 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-08
Identity = 41/133 (30.83%), Postives = 68/133 (51.13%), Query Frame = 1 

Query: 25  WSSPPNGEFKLNTDVACCPDLIRVGMRAVIRDSDGSMVLAIVEWIPNGVLALEAEALVLL 84
           W+ PP    KLN D +   +        +IRD  G +V++    I + +    AE +  L
Sbjct: 18  WTKPPGDVLKLNCDASFIAETGTGSWGVLIRDCGGEIVMSGRGRINHALSPFHAELIACL 77

Query: 85  FRLKVVHQMVVPILLVETDAQTLMNIINGESRKSSSMGVILEEIKTWMRKVNIK-SFIYI 144
             L++   + +  +LVETDAQ ++  I  +    SS+G +++EIK+      I   F Y+
Sbjct: 78  QGLQLAVDLGIGRILVETDAQEVVRAIRLDDYHLSSVGYLIDEIKSLACSNFISFEFAYV 137

Query: 145 QRSCNQVAHKLAS 157
            R CN+ AH+LA+
Sbjct: 138 SRDCNRAAHELAA 150

[Close]
BLAST of ClCG01G013790 vs. NCBI nr
Match: gi|985465094|ref|XP_015389224.1| (PREDICTED: uncharacterized protein LOC107178480 [Citrus sinensis])

HSP 1 Score: 84.0 bits (206), Expect = 2.9e-13
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 1 

Query: 25  WSSPPNGEFKLNTDVACCPDLIRVGMRAVIRDSDGSMVLAIVEWIPNGVLALEAEALVLL 84
           W  PP G FK N D A   +  +VG+  VIRD  G++++A V          +AEA  + 
Sbjct: 115 WIPPPQGHFKANVDAAVNKEKNQVGLGVVIRDDSGAIIIAAVNHTKYHGDVAQAEAAAVN 174

Query: 85  FRLKVVHQMVVPILLVETDAQTLMNIINGESRKSSSMGVILEEIKTWMRKVNIKSFIY-I 144
           F L+VV +  +  L++ETD Q +++ +       + +   + EI+  M+  NI   +  I
Sbjct: 175 FGLQVVMEAKLSPLILETDCQDVVDFVLHNKSSITEICWTISEIQQKMQSFNIMVELQKI 234

Query: 145 QRSCNQVAHKLASWAWANGEKEVWTHCSP 173
           QR+CN +AH LA  A AN E  VW    P
Sbjct: 235 QRTCNVIAHTLAKTALANRESCVWKGAMP 263

[Close]
BLAST of ClCG01G013790 vs. NCBI nr
Match: gi|731346610|ref|XP_010684542.1| (PREDICTED: uncharacterized protein LOC104899105 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 47/152 (30.92%), Postives = 80/152 (52.63%), Query Frame = 1 

Query: 21  ISLVWSSPPNGEFKLNTDVACCPDLIRVGMRAVIRDSDGSMVLAIVEWIPNGVLALEAEA 80
           + + W  PP G +K+N+D AC  D   VG   ++RD++G +++A    I  G  A EAEA
Sbjct: 24  LQMKWQKPPAGHYKVNSDAACFKDGA-VGFGGIMRDAEGDVMVATCHQIGGGFTAEEAEA 83

Query: 81  LVLLFRLKVVHQMVVPILLVETDAQTLMNIINGESRKSSSMGVILEEIKTWMRKVNIKSF 140
           L     L +  +  + ++++E+D   L++ +    R +SS G I+ +I          +F
Sbjct: 84  LAARHALVIALEAGLRMIVLESDCLKLISHLKEGKRDNSSFGNIVLDIMEIGESCTSLNF 143

Query: 141 IYIQRSCNQVAHKLASWAWANGEKEVWTHCSP 173
            ++ +  N VAHKLA  + + GE  VW   +P
Sbjct: 144 SHVSKIGNVVAHKLAQLSHSFGEMRVWIEEAP 174

[Close]
BLAST of ClCG01G013790 vs. NCBI nr
Match: gi|870844006|gb|KMS97072.1| (hypothetical protein BVRB_7g179330 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 79.3 bits (194), Expect = 7.1e-12
Identity = 45/149 (30.20%), Postives = 75/149 (50.34%), Query Frame = 1 

Query: 25  WSSPPNGEFKLNTDVACCPDLIRVGMRAVIRDSDGSMVLAIVEWIPNGVLALEAEALVLL 84
           W  P  G  K+N D A   +  RVG+  V RD +G ++ A    + +   A +AEA  +L
Sbjct: 652 WLLPSPGFIKINVDAAVNGEYCRVGLGMVARDENGQVLRAWSRTMSHDWPAEKAEAAAVL 711

Query: 85  FRLKVVHQMVVPILLVETDAQTLMNIINGESRKSSSMGVILEEIKTWMRKVNIKSFIYIQ 144
           +  +         +++E+DAQ ++N IN   ++   +  +LE++   +       F +  
Sbjct: 712 WATEEAIAQGWSNVVLESDAQVIINAINSRLQRRGDIQAMLEDVLNLVPSFETIKFSFCY 771

Query: 145 RSCNQVAHKLASWAWANGEKEVWTHCSPS 174
           R CN++AH+LA WA +N   EVW    PS
Sbjct: 772 RECNEIAHRLAKWATSNFCDEVWLVGGPS 800

[Close]
BLAST of ClCG01G013790 vs. NCBI nr
Match: gi|985434686|ref|XP_015382715.1| (PREDICTED: uncharacterized protein LOC107175626 [Citrus sinensis])

HSP 1 Score: 77.8 bits (190), Expect = 2.1e-11
Identity = 47/148 (31.76%), Postives = 71/148 (47.97%), Query Frame = 1 

Query: 25  WSSPPNGEFKLNTDVACCPDLIRVGMRAVIRDSDGSMVLAIVEWIPNGVLALEAEALVLL 84
           WS PP    KLN D A      +VG+ AV+RDS+G +V A ++ +        AEA  + 
Sbjct: 265 WSPPPKNVLKLNVDAATNNKNQKVGLGAVLRDSNGRVVAAGIKQVSFRKDVSYAEAEAIQ 324

Query: 85  FRLKVVHQMVVPILLVETDAQTLMNIINGESRKSSSMGVILEEIKTWMRKVNIKSFIYIQ 144
           + L++  +     L+VETD + +  ++N      S +  I+ EI+T  R+     F ++ 
Sbjct: 325 WGLQIAKEAAATSLIVETDCKDVAELVNNTKGSRSEIFWIISEIQTQKREFQRIHFNFVP 384

Query: 145 RSCNQVAHKLASWAWANGEKEVWTHCSP 173
           R CN  AH LA  A       VW    P
Sbjct: 385 RFCNAHAHSLAKHALRKDTAAVWLDILP 412

[Close]
BLAST of ClCG01G013790 vs. NCBI nr
Match: gi|985430949|ref|XP_015387358.1| (PREDICTED: uncharacterized protein LOC107177672 [Citrus sinensis])

HSP 1 Score: 76.3 bits (186), Expect = 6.0e-11
Identity = 42/151 (27.81%), Postives = 81/151 (53.64%), Query Frame = 1 

Query: 24  VWSSPPNGEFKLNTDVACCPDLIRVGMRAVIRDSDGSMVLAIVEWI--PNGVLALEAEAL 83
           +W+ PP  ++K+N D A     ++ G+ AV+R+S+G ++ A V+ +     V ++EAEA+
Sbjct: 224 IWTPPPQRKYKVNVDAAIQMAGLKAGLGAVVRNSNGKIIAAAVKKVCFQGTVASMEAEAV 283

Query: 84  VLLFRLKVVHQMVVPILLVETDAQTLMNIINGESRKSSSMGVILEEIKTWMRKVNIKSFI 143
             LF ++V  Q+    +++E+D+  ++ ++       + +   +EEIK  ++  N  S  
Sbjct: 284 --LFGIQVAQQVEYLPMIIESDSTEVVELVWSRKSSLTEVSWTVEEIKQQLQISNASSLQ 343

Query: 144 YIQRSCNQVAHKLASWAWANGEKEVWTHCSP 173
           Y+ R CN +AH +A  A       +W    P
Sbjct: 344 YVPRKCNVIAHAIAKVALDFENSVIWLEDFP 372

The following BLAST results are available for this feature:
BLAST of ClCG01G013790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0J8BAU9_BETVU5.0e-1230.20Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g179330 PE=4 S... [more]
B9FIH0_ORYSJ1.1e-0830.20Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_19645 PE=4 SV=1[more]
Q2QQB4_ORYSJ1.1e-0832.87Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os12g31630 PE=4 SV=1[more]
C5XQ47_SORBI4.4e-0828.19Putative uncharacterized protein Sb03g006485 (Fragment) OS=Sorghum bicolor GN=Sb... [more]
C5XQ55_SORBI4.4e-0830.83Putative uncharacterized protein Sb03g006560 OS=Sorghum bicolor GN=Sb03g006560 P... [more]
BLAST of ClCG01G013790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|985465094|ref|XP_015389224.1|2.9e-1334.23PREDICTED: uncharacterized protein LOC107178480 [Citrus sinensis][more]
gi|731346610|ref|XP_010684542.1|1.9e-1230.92PREDICTED: uncharacterized protein LOC104899105 [Beta vulgaris subsp. vulgaris][more]
gi|870844006|gb|KMS97072.1|7.1e-1230.20hypothetical protein BVRB_7g179330 [Beta vulgaris subsp. vulgaris][more]
gi|985434686|ref|XP_015382715.1|2.1e-1131.76PREDICTED: uncharacterized protein LOC107175626 [Citrus sinensis][more]
gi|985430949|ref|XP_015387358.1|6.0e-1127.81PREDICTED: uncharacterized protein LOC107177672 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G013790.1ClCG01G013790.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 32..159
score: 5.0
NoneNo IPR availablePANTHERPTHR33033FAMILY NOT NAMEDcoord: 25..173
score: 4.4
NoneNo IPR availablePFAMPF13456RVT_3coord: 37..158
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G013790Wax gourdwcgwgoB243
ClCG01G013790Cucumber (Gy14) v1cgywcgB371
ClCG01G013790Cucurbita maxima (Rimu)cmawcgB154
ClCG01G013790Cucurbita maxima (Rimu)cmawcgB181
ClCG01G013790Cucurbita moschata (Rifu)cmowcgB142
ClCG01G013790Cucurbita moschata (Rifu)cmowcgB172
ClCG01G013790Wild cucumber (PI 183967)cpiwcgB017
ClCG01G013790Cucumber (Chinese Long) v2cuwcgB014
ClCG01G013790Melon (DHL92) v3.5.1mewcgB131
ClCG01G013790Watermelon (97103) v1wcgwmB156
ClCG01G013790Cucurbita pepo (Zucchini)cpewcgB455
ClCG01G013790Cucurbita pepo (Zucchini)cpewcgB727
ClCG01G013790Bottle gourd (USVL1VR-Ls)lsiwcgB230
ClCG01G013790Cucumber (Gy14) v2cgybwcgB014
ClCG01G013790Melon (DHL92) v3.6.1medwcgB127
ClCG01G013790Silver-seed gourdcarwcgB0160
ClCG01G013790Cucumber (Chinese Long) v3cucwcgB016
ClCG01G013790Watermelon (97103) v2wcgwmbB089