ClCG01G011730 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G011730
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr01 : 19814364 .. 19817662 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGGGAAGATGTGAAGGCATGTGGGAAATCCAATGTTGTAAGAAACCTAATGCTGAAGGACAATGTGAAGGCATGTGGGCAATCTTGTATTTGAAAAATCAGTGATGAGAGATGTAGAGAAGGCACTTGAGTATCCTGGAGATCCAGTACTGAGGAACTGGGAGAAGGTACTTGGATAGCCGTGAGCAAATTGTGATTGACTGATGCTGAGGTGTTGAAAGTACTTCACTCAGCTGGGAAATATCGACATTGGGTGCAGTGAGCTTCGCTCAGCCTCAATTAGAGAATGAGATTTAAGGAAACGGTTTGTGAGTAATGTTTCCATAGATAATCAGATGTGGTTAAACTATAATCTGACATATACTAGTGATGGGACATGGCTAGATTTTATATTTTCATACACTATTGAGAAAAACTTTAATTAGTCACTCACTGGGCGTTTAAGCTCACGTTTTCCTTATTTTCTGTTTTTCCAGGTAGCGAGCGAGTTCGGGATGCTTAGCCTACGCAAGATCTCGTCTAGGTCCACCAACGGTGTTTAGTATTCTGAAACTTGTAAATAATTGAACTGGATCATGTGTTGTACACAAAAAGAGGGTTAAGGAAGTTGTTGTGTATTTATGCTATTATATGACTGAATGAAAAGGGTGTGTGTATGGCAAGTTAACTCTGGTATATGTGTGAAGTAGTTTATGGTTTGTAACTGTTTATCAGGTAAATGCAGAGTTTTTGGTTGATAGTGGATGTCGTAGGAGGGTCGGTGTCCGCTGTCATCACACTTCTTCCTGGGTTAGGGGGGTACCTGGGAGGGGGTGTGACAGAAACCCTCATTGTTCACCCAAGACTACTTCACATTTGCACCGCCCTTCTCCCTCGTACCGTCGTCCTGAGAAATTGATTCGTTCCTTCGCCATTAATGGCATCCTCGACGATAACGAACCCAGCCATGTTCGTGCCTCATTTTCCATTGCTACAACTCCTTCATTTTGCCATCACTTGCTTTTCCATGGCTGCCTCTCTGCTTCTGCTCCCATTTCAGTTTCCAGATCCTTATTTCGGAGAGTAAACGGTGACACTCGACTTCTCTCACCTTCGACTCCCTCGAGATACCTGTTGACAAATCTTGTTGTTACTAGTTGTATGTCTTAATAATCTATCAAGTTTTCCTATTTTTCAGCCAAGTATAAGCAAAGAATGAGGTTATCTCAGTGAGTCTGAGGTCGAACATAGGGATTATGCAGATTCTAGAATTCTTGGATTATTTAAGTCATGTGTTTAAGAAAAGTAATAGCTGATGCGTTTGACTAACTACAAAGCAATAAAATTATACTAAGGTGATCGAATGGAGAGGTATGCGACACAGCAAAATCCAACTAATTGAAGTGTATGAATGGTAAAAACAGGACTTGGGTTGGTTATCATCTAAAGTCAGAAACGCATAGGTAGATCTATTTCATACCAGCAACCCTTCTCTCAGTTGTCAGCCGCTATGCCTATATGTTTATAACGCATAGGAGAGTGTTAGATGCCAAGGTTATTCCTATGTCTAGATGACACTTCTTAGCCTTGTCAATTGAGTTCCACAATCACTTACTCTCTCGAGCAGTCTGATTATTACTACTTATATCGATTAGCTAGATGGACATAAGCATTAGATTAAAAGTACAATTGACAAGATGAAATAGATAAAAACTAAGGTTCTTATTTAGATGATAACATAACTCGTGACCCTTAAGAGAATTAGTTACTCATGGATGGTAAACAGCAAATGGAAAGGGATAAGAAATGAATAGCCATGAAAGATGTATTGTCACACCTTACTTTGAAAAATCAATGCGTTAAAGAAAAGAAGTAAAAGACCATGTTGAACGCATGGTCAGGACCAAGATAACGCATGATATGGGTGGACGCATGGAAGTAAACCGAGAAGGAAAAGAAGTGAAACGCATAAGAGAAGATGTAAGTATTGGCGATGGTAAGACACATAAGCAAGAAAGGAATTAAGTCATGTCGTGAAGTATTGAAAGAGATCTAAGTCTCGGAAAGGTAGAATACTATAGCAAACTAAGTAACGCATAGACTATTAGCAAGGGATGTTCTTGGGTGTTGGATAAAGTGGAAGGATGAGAAGTAAGCTCAAAGATTGGAGCAAGAGGTGGATGCATACTAAATTATCATCAGAGTATAAGAGTAGTCGCACAGTGAAGTCATAACGTCTTGCCCGGCCGGCTTTCATTGTTGCAACCTTCGCATTTCCTGTTGCGCTAAAACAAAACAGGAAGCCCCTTTTATGCCACCAGGCAAGGAGTTTCATAATAGAACGTCTCCTTCGATCCCCTCTAACAGTGCGTAATTAATTGATCATCTAACACCGACACCAGCACCGACTGATTACCTTACCGGGGCTCAATGAGTGAGCACCTTTGGATCGATCCTTGGCATATAAATGACAATATGGTGGGATATCGAGAAAGGCTTTCCTTGAGTTTTCAATAAGGGGCGCGTTAGCAAGGTCGTTTTCTTGCAGGAGTGCTAACGCGCACCCTTACGTTTTCTTCGCTTGCTCTGCAGTACGAGCCTCATACAGAGCCGCGCCCCTTTAATATGATGAGAAGAAGAGGGGTGAAGCAGCTTGACCAAGTTTACTAGGGGGAGGAGCTTCGCAACTCGACCGAGTTTACGAGGGAGAGGGGCCGCCCTAGATATTTTGGTACAAGGAAAGGTTAAATGAATAACCTTGGATTACAAGCACAAGGACGTGTAGAGGAGTAATCAAGGAATCTTCAAGGATAGGAGGAAGATCATGGACGCATGATAGTATGCGGTTCAGGCTGACGCATGGTATTATGCAGTAAGACAAACGCATAGTAGTATGCGTTTGAGATATTGACGCCTAGTAGTATGCGGTGGAAAAACGAGTTTAAGGGAAGTATGGTCGAGAGATAGGGAAGTAAATAATGAAGCTCAAATCTTAAAGAAAACTCAATAAACGTATGGGGGCGTTGTGTTGAATGAATAGTTGTTTATTGGAAAATATTGGACGCATAGGATAAACTTATAAAGGCTAGGTGGCTTCATATAGACTTGACACCTTAAAAGTAGGAGGTGTTAAAAAGACATGTTAAGTGTCTCATGCAAGGTGACACTTGGATTAATGCATGGTTAATTAAGCATGCAGCGTGACATGTGGCAAACAAGTGGCAAAAAGGAAAGGAGAAGTTGGATGGCAAGCTCCCTATAAATAGAACCTTGAGGGAAAAGGAGCGACTGATGACTCTAAAAGAAGAATTCTAA

mRNA sequence

ATGCTGAGGGAAGATGTGAAGGCATGTGGGAAATCCAATGTTGTAAGAAACCTAATGCTGAAGGACAATGTGAAGGCATTGATGAGAGATGTAGAGAAGGCACTTGAGTATCCTGGAGATCCAGTACTGAGGAACTGGGAGAAGGTGTTGAAAGTACTTCACTCAGCTGGGAAATATCGACATTGGGTGCACTCACGTTTTCCTTATTTTCTGTTTTTCCAGGTAGCGAGCGAGTTCGGGATGCTTAGCCTACGCAAGATCTCGTCTAGGTCCACCAACGGTAGTTTTTGGTTGATAGTGGATGTCGTAGGAGGGTCGGTGTCCGCTGTCATCACACTTCTTCCTGGAAACCCTCATTGTTCACCCAAGACTACTTCACATTTGCACCGCCCTTCTCCCTCGTACCGTCGTCCTGAGAAATTGATTCGTTCCTTCGCCATTAATGGCATCCTCGACGATAACGAACCCAGCCATGTTCGTGCCTCATTTTCCATTGCTACAACTCCTTCATTTTGCCATCACTTGCTTTTCCATGGCTGCCTCTCTGCTTCTGCTCCCATTTCAGTTTCCAGATCCTTATTTCGGAGAGTAAACGGTGACACTCGACTTCTCTCACCTTCGACTCCCTCGAGATACCTGACCAAGATAACGCATGATATGGGTGGACGCATGGAAGTAAACCGAGAAGGAAAAGAAGTGAAACGCATAAGAGAAGATGTAAGTATTGGCGATGCAAGGGATGTTCTTGGGTGTTGGATAAAGTGGAAGGATGAGAATGAAGTCATAACGTCTTGCCCGGCCGGCTTTCATTGTTGCAACCTTCGCATTTCCTGTTGCGCTAAAACAAAACAGGAAGCCCCTTTTATGCCACCAGGCAAGGAGTTTCATAATAGAACGTCTCCTTCGATCCCCTCTAACAGAGTGCTAACGCGCACCCTTACGTTTTCTTCGCTTGCTCTGCAGTACGAGCCTCATACAGAGCCGCGCCCCTTTAATATGATGAGAAGAAGAGGGGTGAAGCAGCTTGACCAATGGCAAAAAGGAAAGGAGAAGTTGGATGGCAAGCTCCCTATAAATAGAACCTTGAGGGAAAAGGAGCGACTGATGACTCTAAAAGAAGAATTCTAA

Coding sequence (CDS)

ATGCTGAGGGAAGATGTGAAGGCATGTGGGAAATCCAATGTTGTAAGAAACCTAATGCTGAAGGACAATGTGAAGGCATTGATGAGAGATGTAGAGAAGGCACTTGAGTATCCTGGAGATCCAGTACTGAGGAACTGGGAGAAGGTGTTGAAAGTACTTCACTCAGCTGGGAAATATCGACATTGGGTGCACTCACGTTTTCCTTATTTTCTGTTTTTCCAGGTAGCGAGCGAGTTCGGGATGCTTAGCCTACGCAAGATCTCGTCTAGGTCCACCAACGGTAGTTTTTGGTTGATAGTGGATGTCGTAGGAGGGTCGGTGTCCGCTGTCATCACACTTCTTCCTGGAAACCCTCATTGTTCACCCAAGACTACTTCACATTTGCACCGCCCTTCTCCCTCGTACCGTCGTCCTGAGAAATTGATTCGTTCCTTCGCCATTAATGGCATCCTCGACGATAACGAACCCAGCCATGTTCGTGCCTCATTTTCCATTGCTACAACTCCTTCATTTTGCCATCACTTGCTTTTCCATGGCTGCCTCTCTGCTTCTGCTCCCATTTCAGTTTCCAGATCCTTATTTCGGAGAGTAAACGGTGACACTCGACTTCTCTCACCTTCGACTCCCTCGAGATACCTGACCAAGATAACGCATGATATGGGTGGACGCATGGAAGTAAACCGAGAAGGAAAAGAAGTGAAACGCATAAGAGAAGATGTAAGTATTGGCGATGCAAGGGATGTTCTTGGGTGTTGGATAAAGTGGAAGGATGAGAATGAAGTCATAACGTCTTGCCCGGCCGGCTTTCATTGTTGCAACCTTCGCATTTCCTGTTGCGCTAAAACAAAACAGGAAGCCCCTTTTATGCCACCAGGCAAGGAGTTTCATAATAGAACGTCTCCTTCGATCCCCTCTAACAGAGTGCTAACGCGCACCCTTACGTTTTCTTCGCTTGCTCTGCAGTACGAGCCTCATACAGAGCCGCGCCCCTTTAATATGATGAGAAGAAGAGGGGTGAAGCAGCTTGACCAATGGCAAAAAGGAAAGGAGAAGTTGGATGGCAAGCTCCCTATAAATAGAACCTTGAGGGAAAAGGAGCGACTGATGACTCTAAAAGAAGAATTCTAA

Protein sequence

MLREDVKACGKSNVVRNLMLKDNVKALMRDVEKALEYPGDPVLRNWEKVLKVLHSAGKYRHWVHSRFPYFLFFQVASEFGMLSLRKISSRSTNGSFWLIVDVVGGSVSAVITLLPGNPHCSPKTTSHLHRPSPSYRRPEKLIRSFAINGILDDNEPSHVRASFSIATTPSFCHHLLFHGCLSASAPISVSRSLFRRVNGDTRLLSPSTPSRYLTKITHDMGGRMEVNREGKEVKRIREDVSIGDARDVLGCWIKWKDENEVITSCPAGFHCCNLRISCCAKTKQEAPFMPPGKEFHNRTSPSIPSNRVLTRTLTFSSLALQYEPHTEPRPFNMMRRRGVKQLDQWQKGKEKLDGKLPINRTLREKERLMTLKEEF

Homology

[Close]

BLAST of ClCG01G011730 vs. TrEMBL
Match: E5GBC8_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.8e-06
Identity = 30/53 (56.60%), Postives = 34/53 (64.15%), Query Frame = 1


Query: 163 FSIATTPSFCHHLLF---HGCLSASAPISVSRSLFRRVNGDTRLLSPSTPSRY 213
           F +   PSFCHH L    HG LSA  P+SV +S FRR NGD  LLSPS+ S Y
Sbjct: 6   FPLLQLPSFCHHSLLPLLHGRLSAPVPVSVPKSSFRRANGDRHLLSPSSSSSY 58

[Close]

BLAST of ClCG01G011730 vs. NCBI nr
Match: gi|659074289|ref|XP_008437525.1| (PREDICTED: uncharacterized protein LOC103482913 isoform X1 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 7.4e-06
Identity = 31/60 (51.67%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 156 PSHVRASFSIATTPSFCHHLLF---HGCLSASAPISVSRSLFRRVNGDTRLLSPSTPSRY 213
           P+     F +   PSFCHH L    HG LSA  P+SV +S FRR NGD  LLSPS+ S Y
Sbjct: 14  PAMFAPHFPLLQLPSFCHHSLLPLLHGRLSAPVPVSVPKSSFRRANGDRHLLSPSSSSSY 73

[Close]

BLAST of ClCG01G011730 vs. NCBI nr
Match: gi|659074293|ref|XP_008437527.1| (PREDICTED: uncharacterized protein LOC103482913 isoform X3 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 7.4e-06
Identity = 31/60 (51.67%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 156 PSHVRASFSIATTPSFCHHLLF---HGCLSASAPISVSRSLFRRVNGDTRLLSPSTPSRY 213
           P+     F +   PSFCHH L    HG LSA  P+SV +S FRR NGD  LLSPS+ S Y
Sbjct: 14  PAMFAPHFPLLQLPSFCHHSLLPLLHGRLSAPVPVSVPKSSFRRANGDRHLLSPSSSSSY 73

The following BLAST results are available for this feature:

BLAST of ClCG01G011730 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBC8_CUCME	8.8e-06	56.60	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of ClCG01G011730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074289\|ref\|XP_008437525.1\|	7.4e-06	51.67	PREDICTED: uncharacterized protein LOC103482913 isoform X1 [Cucumis melo]	[more]
gi\|659074293\|ref\|XP_008437527.1\|	7.4e-06	51.67	PREDICTED: uncharacterized protein LOC103482913 isoform X3 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G011730.1	ClCG01G011730.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G011730	Cla011059	Watermelon (97103) v1	wcgwmB155

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G011730	Wax gourd	wcgwgoB232
ClCG01G011730	Cucumber (Gy14) v1	cgywcgB552
ClCG01G011730	Cucurbita maxima (Rimu)	cmawcgB180
ClCG01G011730	Cucurbita maxima (Rimu)	cmawcgB341
ClCG01G011730	Cucurbita moschata (Rifu)	cmowcgB171
ClCG01G011730	Cucurbita moschata (Rifu)	cmowcgB346
ClCG01G011730	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G011730	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G011730	Melon (DHL92) v3.5.1	mewcgB133
ClCG01G011730	Cucurbita pepo (Zucchini)	cpewcgB006
ClCG01G011730	Cucurbita pepo (Zucchini)	cpewcgB029
ClCG01G011730	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G011730	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G011730	Melon (DHL92) v3.6.1	medwcgB133
ClCG01G011730	Silver-seed gourd	carwcgB0000
ClCG01G011730	Silver-seed gourd	carwcgB0960
ClCG01G011730	Cucumber (Chinese Long) v3	cucwcgB024
ClCG01G011730	Watermelon (97103) v2	wcgwmbB089