ClCG01G011670 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G011670
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon protein, putative, unclassified
Location	CG_Chr01 : 19551997 .. 19552866 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTCTACGTGAGTGTGAAAACCAGTGTTAGGCCCTAGGATTACTTCGGAATTGGCCTCTTATCTATCCCTTCGGGGCCATCTAATAAGATTGGAATTGGCCTCTTATCTCTTTTTTTTATTCTCAAAATCGGAGTTTGGACGTTCGGGGTATTGCCCCTTAATCGAGGAGTTGGACCATCTGTCTTTCCCCTCAAGGTGGAATGTGGAGGCTCCTGGTAACTGGGAGGGGTACAAGTTAGAAAAGTGGAAGGCTCTTAACCGATGCCAAAATCCAGAAATCAAAGAAACCTTTGGAGATATAAGGATAAAAAAGTAGGAGGTGTTAGGTAAAATTATTGTTATTGATGGTTTTGAAGAGGAGGACCGTTGGATGAGATACTCAAGCAAGAGCATCTCTTGTTAAAAGTGGAGTTTGTGGAGCTGGTAAGGAGAGAGACCATAAGTTGGAGAAAAAATGTGAAAGTAAGGTGGGCCAAGGATGGCGACTGTAATTCTGCATTTTTCCATAGAATGGTGACGGGTAGAAGAAGCAAGAACTTACTTGGCTCTTTAGAGAAAGATGGGGGAGTTGGTAAAAAGGGATACGGAAATCAAAAAGGAAAGGAAATATTATCTTTCATGCCCCAGAGGTGAACCCTAAACCCTTCATGGATGGCCTTAATTGAAGCCACCATCTTTGCAGGTGAACAGGCTGAGTTGGATTCCCCTTTTACCGTAGATGAAATCAAGAAAGTTGTTTTTGAGTGCAATACAAACAAAGCCCATGCGCATGATAGTTTCTCTGTTGCTTTCTTTCAAGATAATTGGGAGGAAATTAAGGAGGATTTTGCATGGGCGGAAATTAAGGAGGATCTCTGCACATGA

mRNA sequence

ATGGAGGTCTACGTGAGTGTGAAAACCAGTTTTGGACGTTCGGGGTATTGCCCCTTAATCGAGGAGTTGGACCATCTGTCTTTCCCCTCAAGGTGGAATGTGGAGGCTCCTGGTAACTGGGAGGGGTACAAGTTAGAAAAGTGGAAGGCTCTTAACCGATGCCAAAATCCAGAAATCAAAGAAACCTTTGGAGATATAAGGATAAAAAAAGGAGGACCGTTGGATGAGATACTCAAGCAAGAGCATCTCTTGTTAAAAGTGGAGTTTGTGGAGCTGGTAAGGAGAGAGACCATAAGTTGGAGAAAAAATGTGAAAGTAAGGTGGGCCAAGGATGGCGACTGTAATTCTGCATTTTTCCATAGAATGGTGACGGGTAGAAGAAGCAAGAACTTACTTGGCTCTTTAGAGAAAGATGGGGGAGTTGGTGAACAGGCTGAGTTGGATTCCCCTTTTACCGTAGATGAAATCAAGAAAGTTGTTTTTGAGTGCAATACAAACAAAGCCCATGCGCATGATAGTTTCTCTGTTGCTTTCTTTCAAGATAATTGGGAGGAAATTAAGGAGGATTTTGCATGGGCGGAAATTAAGGAGGATCTCTGCACATGA

Coding sequence (CDS)

ATGGAGGTCTACGTGAGTGTGAAAACCAGTTTTGGACGTTCGGGGTATTGCCCCTTAATCGAGGAGTTGGACCATCTGTCTTTCCCCTCAAGGTGGAATGTGGAGGCTCCTGGTAACTGGGAGGGGTACAAGTTAGAAAAGTGGAAGGCTCTTAACCGATGCCAAAATCCAGAAATCAAAGAAACCTTTGGAGATATAAGGATAAAAAAAGGAGGACCGTTGGATGAGATACTCAAGCAAGAGCATCTCTTGTTAAAAGTGGAGTTTGTGGAGCTGGTAAGGAGAGAGACCATAAGTTGGAGAAAAAATGTGAAAGTAAGGTGGGCCAAGGATGGCGACTGTAATTCTGCATTTTTCCATAGAATGGTGACGGGTAGAAGAAGCAAGAACTTACTTGGCTCTTTAGAGAAAGATGGGGGAGTTGGTGAACAGGCTGAGTTGGATTCCCCTTTTACCGTAGATGAAATCAAGAAAGTTGTTTTTGAGTGCAATACAAACAAAGCCCATGCGCATGATAGTTTCTCTGTTGCTTTCTTTCAAGATAATTGGGAGGAAATTAAGGAGGATTTTGCATGGGCGGAAATTAAGGAGGATCTCTGCACATGA

Protein sequence

MEVYVSVKTSFGRSGYCPLIEELDHLSFPSRWNVEAPGNWEGYKLEKWKALNRCQNPEIKETFGDIRIKKGGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKNLLGSLEKDGGVGEQAELDSPFTVDEIKKVVFECNTNKAHAHDSFSVAFFQDNWEEIKEDFAWAEIKEDLCT

Homology

[Close]

BLAST of ClCG01G011670 vs. TrEMBL
Match: A5BE08_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043409 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.2e-21
Identity = 66/188 (35.11%), Postives = 96/188 (51.06%), Query Frame = 1


Query: 40  WEGYK-----------LEKWKALN-RCQNPEIKETFGDIR----IKKGGPLDEILKQEHL 99
           WEG+K           L++W  ++ R  N   K    D+     I++ G L   L  +  
Sbjct: 625 WEGHKFMRRLQFVKANLKEWNKVSFRELNERKKNILNDLANLDAIEQVGGLTSDLLVQSA 684

Query: 100 LLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKNLLGSLEKDGGV-- 159
           L K E  EL+ RE I WR+ V+V+W K+GDCNS FFH++  GRR++  +  LE + G+  
Sbjct: 685 LRKGELEELILREEIHWRQKVRVKWVKEGDCNSKFFHKVANGRRNRKFIKVLENESGLLY 744

Query: 160 ----GEQ----------------AELDSPFTVDEIKKVVFECNTNKAHAHDSFSVAFFQD 190
               GE                 + LDSPFT +EI K +F+ + +KA   D F++  FQD
Sbjct: 745 ASPTGESWSIEGLDWSPISEESASRLDSPFTEEEISKAIFQLDRDKASGPDGFTITVFQD 804

[Close]

BLAST of ClCG01G011670 vs. TrEMBL
Match: A5BA26_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032700 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 65/194 (33.51%), Postives = 97/194 (50.00%), Query Frame = 1


Query: 27  SFPSRWNVEAPGNWEGYKL--------EKWKALNRCQNPEIKETFGDI--------RIKK 86
           +F   W+      WEG+K          K K  N+    E+KE    I         I++
Sbjct: 106 NFRDWWSGFQGNGWEGHKFMRRLQYVKAKLKEWNKFSFGELKEKKKSILNDLANFDAIEQ 165

Query: 87  GGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKN 146
            G L+  L  +    K E  EL+ RE I WR+  KV+W K+G CNS F+H++  GRR++ 
Sbjct: 166 EGGLNPDLLSQRASRKGELEELILREEIHWRQKAKVKWVKEGXCNSKFYHKVANGRRNRK 225

Query: 147 LLGSLEKDGG-------------VGEQA--ELDSPFTVDEIKKVVFECNTNKAHAHDSFS 190
            +  LE + G             + E++   LDSPFT +EI K +F+ + +KA   D F+
Sbjct: 226 YIKELENERGLVLKNAERLDWSPISEESALRLDSPFTEEEISKAIFQLDRDKAPGPDGFT 285

[Close]

BLAST of ClCG01G011670 vs. TrEMBL
Match: A5BSZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024106 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.4e-20
Identity = 65/201 (32.34%), Postives = 99/201 (49.25%), Query Frame = 1


Query: 27   SFPSRWNVEAPGNWEGYKL--------EKWKALNRCQNPEIKETFGDI--------RIKK 86
            +F   W+      WEG+K          K K  N+    E+KE    I         I++
Sbjct: 891  NFRDWWSGFQGIGWEGHKFMRRLQYVKAKLKEWNKSSFGELKEKKKSILNDLANFDAIEQ 950

Query: 87   GGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKN 146
             G L+  L  + +  K E  EL+ RE I WR+  KV+W K+GDCNS F+H++  GRR++ 
Sbjct: 951  EGGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRK 1010

Query: 147  LLGSLEKDGG--------------------VGEQA--ELDSPFTVDEIKKVVFECNTNKA 190
             +  LE + G                    + E++   L+SPFT +EI K +F+ + +KA
Sbjct: 1011 YIKELENERGLVLKNAERESWGVEGLDWSPISEESALRLESPFTEEEISKAIFQLDRBKA 1070

[Close]

BLAST of ClCG01G011670 vs. TrEMBL
Match: A5AND6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006535 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.9e-19
Identity = 71/200 (35.50%), Postives = 99/200 (49.50%), Query Frame = 1


Query: 23  LDHLSFPSR---WNVEAPGN-WEGYKL--------EKWKALNRCQNPEIKETFGDIRI-- 82
           L H SF      W  E  GN WEG+K          K KA N+    E  E    I +  
Sbjct: 723 LQHPSFKEHFGSWWREFQGNGWEGHKFMRQLQFVKAKLKAWNKASFGEXNERKKSILLDL 782

Query: 83  -------KKGGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHR 142
                  ++ G   E+L Q   L K E  EL+ RE I WR+  +V+W K+GDCNS FFH+
Sbjct: 783 ANFDTMEQERGISXELLVQR-ALRKEELEELILREEIHWRQKTRVKWVKEGDCNSNFFHK 842

Query: 143 MVTGRRSKNLLGS-----------LEKDGGVGEQA-ELDSPFTVDEIKKVVFECNTNKAH 190
           +  GR ++  + +           L+     GE A  L+SPFT +EI K +F+ + +KA 
Sbjct: 843 VANGRXNRKYIKASPSKESWRVEGLDWSXIFGESASRLESPFTEEEISKAIFQLDRDKAX 902

[Close]

BLAST of ClCG01G011670 vs. TrEMBL
Match: A5CB84_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003508 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.6e-17
Identity = 55/165 (33.33%), Postives = 85/165 (51.52%), Query Frame = 1


Query: 32  WNVEAPGNWEGYKLEKWKALNRCQNPEIKETFGDIRIKKGGPLDEILKQEHLLLKVEFVE 91
           WN ++ G  E  K +K   LN   N ++        +++ G L   L  +  L K E  E
Sbjct: 480 WNKDSFG--ELNKRKKKSILNEIANFDV--------VEQEGVLTSELSAQRALRKGELEE 539

Query: 92  LVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKNLLGSLEKDGGV-------GEQ 151
           L+ RE I WR+  KV+W K+ DCNS FFH++  GRR++  +    +  G+          
Sbjct: 540 LILREEIHWRQKAKVKWVKERDCNSKFFHKVANGRRNRKFIKESWRVEGLDWSPISEDSA 599

Query: 152 AELDSPFTVDEIKKVVFECNTNKAHAHDSFSVAFFQDNWEEIKED 190
           + LDSPFT +EI K +F+ + + A   D F++A FQ+ W+    D
Sbjct: 600 SRLDSPFTKEEISKAIFQLDRDNASGPDGFTIAMFQNCWDVTNGD 634

[Close]

BLAST of ClCG01G011670 vs. TAIR10
Match: AT1G43760.1 (AT1G43760.1 DNAse I-like superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-09
Identity = 56/232 (24.14%), Postives = 90/232 (38.79%), Query Frame = 1


Query: 26  LSFPSRWNVEAPGNWEGYKL-EKWKALNRCQNPEIKETFGDIRIKKGGPLDEILKQEHLL 85
           +S    W  + P     + L E  KA  +C     ++ FG+I+ K    LD +   +  L
Sbjct: 346 VSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQL 405

Query: 86  LKVEFVELVRRETIS--------------WRKNVKVRWAKDGDCNSAFFHRMVTGRRSKN 145
           L      L R E ++              +R+  +++W +DGD N+ FFH+++   ++KN
Sbjct: 406 LTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKN 465

Query: 146 LLGSLEKDGGV--------------------GEQAELDSPFTVDEIKKV-VFECN----- 198
           L+  L  D  V                    G  +++ +P +V  IK +  F CN     
Sbjct: 466 LIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLAS 525

[Close]

BLAST of ClCG01G011670 vs. NCBI nr
Match: gi|147766255|emb|CAN72278.1| (hypothetical protein VITISV_043409 [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 7.5e-21
Identity = 66/188 (35.11%), Postives = 96/188 (51.06%), Query Frame = 1


Query: 40  WEGYK-----------LEKWKALN-RCQNPEIKETFGDIR----IKKGGPLDEILKQEHL 99
           WEG+K           L++W  ++ R  N   K    D+     I++ G L   L  +  
Sbjct: 625 WEGHKFMRRLQFVKANLKEWNKVSFRELNERKKNILNDLANLDAIEQVGGLTSDLLVQSA 684

Query: 100 LLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKNLLGSLEKDGGV-- 159
           L K E  EL+ RE I WR+ V+V+W K+GDCNS FFH++  GRR++  +  LE + G+  
Sbjct: 685 LRKGELEELILREEIHWRQKVRVKWVKEGDCNSKFFHKVANGRRNRKFIKVLENESGLLY 744

Query: 160 ----GEQ----------------AELDSPFTVDEIKKVVFECNTNKAHAHDSFSVAFFQD 190
               GE                 + LDSPFT +EI K +F+ + +KA   D F++  FQD
Sbjct: 745 ASPTGESWSIEGLDWSPISEESASRLDSPFTEEEISKAIFQLDRDKASGPDGFTITVFQD 804

[Close]

BLAST of ClCG01G011670 vs. NCBI nr
Match: gi|147864302|emb|CAN78803.1| (hypothetical protein VITISV_032700 [Vitis vinifera])

HSP 1 Score: 107.8 bits (268), Expect = 2.2e-20
Identity = 65/194 (33.51%), Postives = 97/194 (50.00%), Query Frame = 1


Query: 27  SFPSRWNVEAPGNWEGYKL--------EKWKALNRCQNPEIKETFGDI--------RIKK 86
           +F   W+      WEG+K          K K  N+    E+KE    I         I++
Sbjct: 106 NFRDWWSGFQGNGWEGHKFMRRLQYVKAKLKEWNKFSFGELKEKKKSILNDLANFDAIEQ 165

Query: 87  GGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKN 146
            G L+  L  +    K E  EL+ RE I WR+  KV+W K+G CNS F+H++  GRR++ 
Sbjct: 166 EGGLNPDLLSQRASRKGELEELILREEIHWRQKAKVKWVKEGXCNSKFYHKVANGRRNRK 225

Query: 147 LLGSLEKDGG-------------VGEQA--ELDSPFTVDEIKKVVFECNTNKAHAHDSFS 190
            +  LE + G             + E++   LDSPFT +EI K +F+ + +KA   D F+
Sbjct: 226 YIKELENERGLVLKNAERLDWSPISEESALRLDSPFTEEEISKAIFQLDRDKAPGPDGFT 285

[Close]

BLAST of ClCG01G011670 vs. NCBI nr
Match: gi|147859788|emb|CAN83561.1| (hypothetical protein VITISV_024106 [Vitis vinifera])

HSP 1 Score: 106.7 bits (265), Expect = 4.8e-20
Identity = 65/201 (32.34%), Postives = 99/201 (49.25%), Query Frame = 1


Query: 27   SFPSRWNVEAPGNWEGYKL--------EKWKALNRCQNPEIKETFGDI--------RIKK 86
            +F   W+      WEG+K          K K  N+    E+KE    I         I++
Sbjct: 891  NFRDWWSGFQGIGWEGHKFMRRLQYVKAKLKEWNKSSFGELKEKKKSILNDLANFDAIEQ 950

Query: 87   GGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKN 146
             G L+  L  + +  K E  EL+ RE I WR+  KV+W K+GDCNS F+H++  GRR++ 
Sbjct: 951  EGGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRK 1010

Query: 147  LLGSLEKDGG--------------------VGEQA--ELDSPFTVDEIKKVVFECNTNKA 190
             +  LE + G                    + E++   L+SPFT +EI K +F+ + +KA
Sbjct: 1011 YIKELENERGLVLKNAERESWGVEGLDWSPISEESALRLESPFTEEEISKAIFQLDRBKA 1070

[Close]

BLAST of ClCG01G011670 vs. NCBI nr
Match: gi|147842041|emb|CAN69237.1| (hypothetical protein VITISV_006535 [Vitis vinifera])

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 71/200 (35.50%), Postives = 100/200 (50.00%), Query Frame = 1


Query: 23  LDHLSFPSR---WNVEAPGN-WEGYKL--------EKWKALNRCQNPEIKETFGDIRI-- 82
           L H SF      W  E  GN WEG+K          K KA N+    E+ E    I +  
Sbjct: 723 LQHPSFKEHFGSWWREFQGNGWEGHKFMRQLQFVKAKLKAWNKASFGEJNERKKSILLDL 782

Query: 83  -------KKGGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHR 142
                  ++ G   E+L Q   L K E  EL+ RE I WR+  +V+W K+GDCNS FFH+
Sbjct: 783 ANFDTMEQERGISXELLVQR-ALRKEELEELILREEIHWRQKTRVKWVKEGDCNSNFFHK 842

Query: 143 MVTGRRSKNLLGS-----------LEKDGGVGEQA-ELDSPFTVDEIKKVVFECNTNKAH 190
           +  GR ++  + +           L+     GE A  L+SPFT +EI K +F+ + +KA 
Sbjct: 843 VANGRXNRKYIKASPSKESWRVEGLDWSXIFGESASRLESPFTEEEISKAIFQLDRDKAX 902

[Close]

BLAST of ClCG01G011670 vs. NCBI nr
Match: gi|147825237|emb|CAN64404.1| (hypothetical protein VITISV_003508 [Vitis vinifera])

HSP 1 Score: 96.3 bits (238), Expect = 6.6e-17
Identity = 55/165 (33.33%), Postives = 85/165 (51.52%), Query Frame = 1


Query: 32  WNVEAPGNWEGYKLEKWKALNRCQNPEIKETFGDIRIKKGGPLDEILKQEHLLLKVEFVE 91
           WN ++ G  E  K +K   LN   N ++        +++ G L   L  +  L K E  E
Sbjct: 480 WNKDSFG--ELNKRKKKSILNEIANFDV--------VEQEGVLTSELSAQRALRKGELEE 539

Query: 92  LVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKNLLGSLEKDGGV-------GEQ 151
           L+ RE I WR+  KV+W K+ DCNS FFH++  GRR++  +    +  G+          
Sbjct: 540 LILREEIHWRQKAKVKWVKERDCNSKFFHKVANGRRNRKFIKESWRVEGLDWSPISEDSA 599

Query: 152 AELDSPFTVDEIKKVVFECNTNKAHAHDSFSVAFFQDNWEEIKED 190
           + LDSPFT +EI K +F+ + + A   D F++A FQ+ W+    D
Sbjct: 600 SRLDSPFTKEEISKAIFQLDRDNASGPDGFTIAMFQNCWDVTNGD 634

The following BLAST results are available for this feature:

BLAST of ClCG01G011670 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BE08_VITVI	5.2e-21	35.11	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043409 PE=4 SV=1	[more]
A5BA26_VITVI	1.5e-20	33.51	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032700 PE=4 SV=1	[more]
A5BSZ6_VITVI	3.4e-20	32.34	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024106 PE=4 SV=1	[more]
A5AND6_VITVI	4.9e-19	35.50	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006535 PE=4 SV=1	[more]
A5CB84_VITVI	4.6e-17	33.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003508 PE=4 SV=1	[more]

BLAST of ClCG01G011670 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G43760.1	1.4e-09	24.14	DNAse I-like superfamily protein	[more]

BLAST of ClCG01G011670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147766255\|emb\|CAN72278.1\|	7.5e-21	35.11	hypothetical protein VITISV_043409 [Vitis vinifera]	[more]
gi\|147864302\|emb\|CAN78803.1\|	2.2e-20	33.51	hypothetical protein VITISV_032700 [Vitis vinifera]	[more]
gi\|147859788\|emb\|CAN83561.1\|	4.8e-20	32.34	hypothetical protein VITISV_024106 [Vitis vinifera]	[more]
gi\|147842041\|emb\|CAN69237.1\|	2.4e-19	35.50	hypothetical protein VITISV_006535 [Vitis vinifera]	[more]
gi\|147825237\|emb\|CAN64404.1\|	6.6e-17	33.33	hypothetical protein VITISV_003508 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G011670.1	ClCG01G011670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 45..187 score: 4.4
None	No IPR available	PANTHER	PTHR19446:SF368	SUBFAMILY NOT NAMED	coord: 45..187 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G011670	Silver-seed gourd	carwcgB0000
ClCG01G011670	Cucumber (Chinese Long) v3	cucwcgB024
ClCG01G011670	Watermelon (97103) v2	wcgwmbB089
ClCG01G011670	Cucumber (Gy14) v1	cgywcgB552
ClCG01G011670	Cucurbita maxima (Rimu)	cmawcgB180
ClCG01G011670	Cucurbita maxima (Rimu)	cmawcgB341
ClCG01G011670	Cucurbita moschata (Rifu)	cmowcgB171
ClCG01G011670	Cucurbita moschata (Rifu)	cmowcgB346
ClCG01G011670	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G011670	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G011670	Melon (DHL92) v3.5.1	mewcgB133
ClCG01G011670	Watermelon (97103) v1	wcgwmB155
ClCG01G011670	Cucurbita pepo (Zucchini)	cpewcgB006
ClCG01G011670	Cucurbita pepo (Zucchini)	cpewcgB029
ClCG01G011670	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G011670	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G011670	Melon (DHL92) v3.6.1	medwcgB133