ClCG01G011630 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G011630
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	CG_Chr01 : 19473524 .. 19474024 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAACGTTAACGACGATCCTCAACTTCTTCCTAAAACCTCCATTCCTAATCATTCCCTCATGAAATCAACCATCGAGTCTGCCTATGTGAAAAAGGACGCTGATGCGTATGAAGTTAGATCTGGAACTTGCCCAGTCAGCACCCTTGCTTTCGCCAACTTGTTGAATCAAGTGACTTCCACCAAAATGGATGGCAACAACTTTTTATTGTGGCAGAATATTGCTTTCCCAATCCTTTGGAGTTACAAACTTGAAAGACACCTCACTCGTAAAGATGTTTGTCCTGAAATGTCTATTATACTTCCTCCCTTAGAAGACGAACCACAGGGTTTATTACTTCTGAATCCCGAATATGATATTTGGATAGCTATTGATCAGCTTCTCGTTGGGTGGTTATATAACTCGATGACAATAAAAGTGGCTTCTCAACTCACTAGGCATGATACAACAAAGGGACTGTGGGAGGCGCTGTTCTATGGGCTTCAAGCCTCATCTTAA

mRNA sequence

ATGACCAACGTTAACGACGATCCTCAACTTCTTCCTAAAACCTCCATTCCTAATCATTCCCTCATGAAATCAACCATCGAGTCTGCCTATGTGAAAAAGGACGCTGATGCGTATGAAGTTAGATCTGGAACTTGCCCAGTCAGCACCCTTGCTTTCGCCAACTTGTTGAATCAAGTGACTTCCACCAAAATGGATGGCAACAACTTTTTATTGTGGCAGAATATTGCTTTCCCAATCCTTTGGAGTTACAAACTTGAAAGACACCTCACTCGTAAAGATGTTTGTCCTGAAATGTCTATTATACTTCCTCCCTTAGAAGACGAACCACAGGGTTTATTACTTCTGAATCCCGAATATGATATTTGGATAGCTATTGATCAGCTTCTCGTTGGGTGGTTATATAACTCGATGACAATAAAAGTGGCTTCTCAACTCACTAGGCATGATACAACAAAGGGACTGTGGGAGGCGCTGTTCTATGGGCTTCAAGCCTCATCTTAA

Coding sequence (CDS)

ATGACCAACGTTAACGACGATCCTCAACTTCTTCCTAAAACCTCCATTCCTAATCATTCCCTCATGAAATCAACCATCGAGTCTGCCTATGTGAAAAAGGACGCTGATGCGTATGAAGTTAGATCTGGAACTTGCCCAGTCAGCACCCTTGCTTTCGCCAACTTGTTGAATCAAGTGACTTCCACCAAAATGGATGGCAACAACTTTTTATTGTGGCAGAATATTGCTTTCCCAATCCTTTGGAGTTACAAACTTGAAAGACACCTCACTCGTAAAGATGTTTGTCCTGAAATGTCTATTATACTTCCTCCCTTAGAAGACGAACCACAGGGTTTATTACTTCTGAATCCCGAATATGATATTTGGATAGCTATTGATCAGCTTCTCGTTGGGTGGTTATATAACTCGATGACAATAAAAGTGGCTTCTCAACTCACTAGGCATGATACAACAAAGGGACTGTGGGAGGCGCTGTTCTATGGGCTTCAAGCCTCATCTTAA

Protein sequence

MTNVNDDPQLLPKTSIPNHSLMKSTIESAYVKKDADAYEVRSGTCPVSTLAFANLLNQVTSTKMDGNNFLLWQNIAFPILWSYKLERHLTRKDVCPEMSIILPPLEDEPQGLLLLNPEYDIWIAIDQLLVGWLYNSMTIKVASQLTRHDTTKGLWEALFYGLQASS

Homology

[Close]

BLAST of ClCG01G011630 vs. TrEMBL
Match: V7CEQ5_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G005200g PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-11
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 1


Query: 63  KMDGNNFLLWQNIAFPILWSYKLERHLTRKDVCPEMSIILPPLEDEPQGLLLLNPEYDIW 122
           K+D  N+LLW+    PI+  +KL+ H+     CP   +   P       + + NPE++ W
Sbjct: 22  KLDHTNYLLWETTILPIIRGHKLDGHVFGNKPCPPEFL---PRTTPGSTVKIPNPEFEEW 81

Query: 123 IAIDQLLVGWLYNSMTIKVASQLTRHDTTKGLWEA 158
           ++  QLL+GWLY++M   +ASQL R+ T K LW+A
Sbjct: 82  VSNHQLLLGWLYSTMRTDIASQLMRNSTLKELWDA 113

[Close]

BLAST of ClCG01G011630 vs. TrEMBL
Match: A0A151QNK8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_047566 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-10
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 1


Query: 54  NLLNQVTSTKMDGNNFLLWQNIAFPILWSYKLERHLTRKDVCPEMSIILPPLEDEPQGLL 113
           N L  + S K+D +N+ LW+++   I+   +L+ H+     CPE  I       +P    
Sbjct: 11  NDLPSIVSVKLDRDNYPLWKSLVISIVKGCRLDGHMLGTKECPEEFIASADSSKKP---- 70

Query: 114 LLNPEYDIWIAIDQLLVGWLYNSMTIKVASQLTRHDTTKGLWE 157
             NP ++ W A D  L+GWL NSMTI++A+QL   +T+K LW+
Sbjct: 71  --NPAFENWQAHDSQLLGWLMNSMTIEMATQLLHCETSKQLWD 107

[Close]

BLAST of ClCG01G011630 vs. TrEMBL
Match: A0A151RKJ3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_035512 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.4e-09
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 1


Query: 54  NLLNQVTSTKMDGNNFLLWQNIAFPILWSYKLERHLTRKDVCPEMSIILPPLEDEPQGLL 113
           N+L+   S K+D  N+ LW+++  P L  + L+ +L     CP   II    +       
Sbjct: 14  NILSIPCSVKLDRKNYRLWKSLVLPSLKGHNLDGYLFGTTKCPPEFIIDETGKKN----- 73

Query: 114 LLNPEYDIWIAIDQLLVGWLYNSMTIKVASQLTRHDTTKGLWE 157
             NP +  W + DQLL+GWL NSMT +VA+QL   +T++ +WE
Sbjct: 74  --NPAFADWTSTDQLLLGWLINSMTQEVATQLLHCETSQQIWE 109

[Close]

BLAST of ClCG01G011630 vs. TrEMBL
Match: A0A151TYZ8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_004833 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 1


Query: 61  STKMDGNNFLLWQNIAFPILWSYKLERHL--TRKDVCPEMSIILPPLEDEPQGLLLLNPE 120
           S K+D NN++LWQ++   ++   K+  ++  T K    E +               +N  
Sbjct: 17  SVKLDRNNYMLWQSLLLHVIKGKKMYSYISVTNKQFTNEEN-------------KKVNLT 76

Query: 121 YDIWIAIDQLLVGWLYNSMTIKVASQLTRHDTTKGLWEA 158
           Y+ WIA DQ L+GWL+NSMT  +A+QL  +DT K LWEA
Sbjct: 77  YEEWIANDQQLLGWLFNSMTHDIATQLLHYDTLKKLWEA 102

[Close]

BLAST of ClCG01G011630 vs. TrEMBL
Match: U6EFK2_9FABA (Putative Ty1-copia-like retrotransposon OS=Cercis chinensis GN=Ty1-copia PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 31/101 (30.69%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 58  QVTSTKMDGNNFLLWQNIAFPILWSYKLERHLTRKDVCPEMSIILPPLEDEPQGLLLLNP 117
           Q  + K+D NNFL+W+N    I+ +   E  L     CP   I +        G ++LNP
Sbjct: 43  QTLTIKLDRNNFLIWRNQLLNIVVANGYEDILEGTRSCPYQWIAVTDTASTTHGSVILNP 102

Query: 118 EYDIWIAIDQLLVGWLYNSMTIKVASQLTRHDTTKGLWEAL 159
           EY +W   ++L++ W+Y+S+T ++ +Q+  +++   +W AL
Sbjct: 103 EYVLWQRQNRLVMSWIYSSLTEQMMTQIMAYNSACEIWTAL 143

[Close]

BLAST of ClCG01G011630 vs. NCBI nr
Match: gi|593787208|ref|XP_007156643.1| (hypothetical protein PHAVU_002G005200g, partial [Phaseolus vulgaris])

HSP 1 Score: 76.6 bits (187), Expect = 4.4e-11
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 1


Query: 63  KMDGNNFLLWQNIAFPILWSYKLERHLTRKDVCPEMSIILPPLEDEPQGLLLLNPEYDIW 122
           K+D  N+LLW+    PI+  +KL+ H+     CP   +   P       + + NPE++ W
Sbjct: 22  KLDHTNYLLWETTILPIIRGHKLDGHVFGNKPCPPEFL---PRTTPGSTVKIPNPEFEEW 81

Query: 123 IAIDQLLVGWLYNSMTIKVASQLTRHDTTKGLWEA 158
           ++  QLL+GWLY++M   +ASQL R+ T K LW+A
Sbjct: 82  VSNHQLLLGWLYSTMRTDIASQLMRNSTLKELWDA 113

[Close]

BLAST of ClCG01G011630 vs. NCBI nr
Match: gi|828332633|ref|XP_004513130.2| (PREDICTED: uncharacterized protein LOC101488260, partial [Cicer arietinum])

HSP 1 Score: 75.9 bits (185), Expect = 7.6e-11
Identity = 40/115 (34.78%), Postives = 61/115 (53.04%), Query Frame = 1


Query: 41  RSGTCPVSTLAFANLLNQVTSTKMDGNNFLLWQNIAFPILWSYKLERHLTRKDVCPEMSI 100
           RS     +     N L    S K+D +N+LLW+++  P++   KL+ ++     CPE  I
Sbjct: 2   RSNKSSAANTNHKNDLPTTVSVKLDRDNYLLWKSLVLPLIRGCKLDGYIIGTKECPEQFI 61

Query: 101 ILPPLEDEPQGLLLLNPEYDIWIAIDQLLVGWLYNSMTIKVASQLTRHDTTKGLW 156
                  +       NP+Y+ WIA DQ L+GWL NS+ I +A+QL   +T+K LW
Sbjct: 62  STNDTTKKN------NPDYEEWIAHDQALLGWLRNSVAIDIATQLLHCETSKELW 110

[Close]

BLAST of ClCG01G011630 vs. NCBI nr
Match: gi|1012318520|gb|KYP31890.1| (hypothetical protein KK1_047566 [Cajanus cajan])

HSP 1 Score: 72.4 bits (176), Expect = 8.4e-10
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 1


Query: 54  NLLNQVTSTKMDGNNFLLWQNIAFPILWSYKLERHLTRKDVCPEMSIILPPLEDEPQGLL 113
           N L  + S K+D +N+ LW+++   I+   +L+ H+     CPE  I       +P    
Sbjct: 11  NDLPSIVSVKLDRDNYPLWKSLVISIVKGCRLDGHMLGTKECPEEFIASADSSKKP---- 70

Query: 114 LLNPEYDIWIAIDQLLVGWLYNSMTIKVASQLTRHDTTKGLWE 157
             NP ++ W A D  L+GWL NSMTI++A+QL   +T+K LW+
Sbjct: 71  --NPAFENWQAHDSQLLGWLMNSMTIEMATQLLHCETSKQLWD 107

[Close]

BLAST of ClCG01G011630 vs. NCBI nr
Match: gi|828335907|ref|XP_012575528.1| (PREDICTED: uncharacterized protein LOC105853050 [Cicer arietinum])

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 1


Query: 54  NLLNQVTSTKMDGNNFLLWQNIAFPILWSYKLERHLTRKDVCPEMSIILPPLEDEPQGLL 113
           N L    S K+D +N+ LW+++   I+  Y+L+ H+     CPE  I        P    
Sbjct: 11  NDLPFTVSVKLDRDNYPLWKSLVISIVKGYRLDGHMLGTKECPEKFIASTDSIKNP---- 70

Query: 114 LLNPEYDIWIAIDQLLVGWLYNSMTIKVASQLTRHDTTKGLWE 157
             NP ++ W A D  L+GWL NSMT ++A+QL   +T+K LW+
Sbjct: 71  --NPAFEDWQAHDSQLLGWLMNSMTTEMATQLLHCETSKQLWD 107

[Close]

BLAST of ClCG01G011630 vs. NCBI nr
Match: gi|1012331601|gb|KYP43069.1| (hypothetical protein KK1_035512 [Cajanus cajan])

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 1


Query: 54  NLLNQVTSTKMDGNNFLLWQNIAFPILWSYKLERHLTRKDVCPEMSIILPPLEDEPQGLL 113
           N+L+   S K+D  N+ LW+++  P L  + L+ +L     CP   II    +       
Sbjct: 14  NILSIPCSVKLDRKNYRLWKSLVLPSLKGHNLDGYLFGTTKCPPEFIIDETGKKN----- 73

Query: 114 LLNPEYDIWIAIDQLLVGWLYNSMTIKVASQLTRHDTTKGLWE 157
             NP +  W + DQLL+GWL NSMT +VA+QL   +T++ +WE
Sbjct: 74  --NPAFADWTSTDQLLLGWLINSMTQEVATQLLHCETSQQIWE 109

The following BLAST results are available for this feature:

BLAST of ClCG01G011630 vs. TrEMBL


Match Name	E-value	Identity	Description
V7CEQ5_PHAVU	3.1e-11	37.89	Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G005200g PE...	[more]
A0A151QNK8_CAJCA	5.8e-10	35.92	Uncharacterized protein OS=Cajanus cajan GN=KK1_047566 PE=4 SV=1	[more]
A0A151RKJ3_CAJCA	8.4e-09	35.92	Uncharacterized protein OS=Cajanus cajan GN=KK1_035512 PE=4 SV=1	[more]
A0A151TYZ8_CAJCA	1.9e-08	37.37	Uncharacterized protein OS=Cajanus cajan GN=KK1_004833 PE=4 SV=1	[more]
U6EFK2_9FABA	1.2e-07	30.69	Putative Ty1-copia-like retrotransposon OS=Cercis chinensis GN=Ty1-copia PE=4 SV...	[more]

BLAST of ClCG01G011630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|593787208\|ref\|XP_007156643.1\|	4.4e-11	37.89	hypothetical protein PHAVU_002G005200g, partial [Phaseolus vulgaris]	[more]
gi\|828332633\|ref\|XP_004513130.2\|	7.6e-11	34.78	PREDICTED: uncharacterized protein LOC101488260, partial [Cicer arietinum]	[more]
gi\|1012318520\|gb\|KYP31890.1\|	8.4e-10	35.92	hypothetical protein KK1_047566 [Cajanus cajan]	[more]
gi\|828335907\|ref\|XP_012575528.1\|	3.2e-09	35.92	PREDICTED: uncharacterized protein LOC105853050 [Cicer arietinum]	[more]
gi\|1012331601\|gb\|KYP43069.1\|	1.2e-08	35.92	hypothetical protein KK1_035512 [Cajanus cajan]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G011630.1	ClCG01G011630.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G011630	Cucurbita pepo (Zucchini)	cpewcgB006
ClCG01G011630	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G011630	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G011630	Melon (DHL92) v3.6.1	medwcgB133
ClCG01G011630	Silver-seed gourd	carwcgB0000
ClCG01G011630	Cucumber (Chinese Long) v3	cucwcgB024
ClCG01G011630	Watermelon (97103) v2	wcgwmbB089
ClCG01G011630	Wax gourd	wcgwgoB246
ClCG01G011630	Cucumber (Gy14) v1	cgywcgB552
ClCG01G011630	Cucurbita maxima (Rimu)	cmawcgB180
ClCG01G011630	Cucurbita maxima (Rimu)	cmawcgB341
ClCG01G011630	Cucurbita moschata (Rifu)	cmowcgB171
ClCG01G011630	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G011630	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G011630	Melon (DHL92) v3.5.1	mewcgB133
ClCG01G011630	Watermelon (97103) v1	wcgwmB155