ClCG01G011620 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G011620
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	CG_Chr01 : 19472864 .. 19473519 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAACAAACAAGAAAAGGAAGCTCCAAGATGGCCGAATATCTGACTTTAATGAAACGCTTTGCTGATAATTTATATTTGGTAGGTTCCCCAGTTAGTACAAAAAATCTAATCTTATACGTGATTACAGGACTTGATGAAGAGTACACTCCCATTGTAGTTGTTTTATAGAACTAAGATTTGAATTGGACCACGGTGCAAAATTAGCTGCTTACCTATGAAAATTTCCAAGAATAACTTCAATCTTACAAAGGGCTAGTCTCTATTAATCAACCCTCAACAAATCTAGCTTCAGTGACTCCTAATCAAGAATCAACCTCCAACAATTAGTTCAGATCTTTCAATTCAAGGAACTTTAGAGGCAAAGGCAGGGCCGTAGTGGAGGTTCATCCAAGCTAATTTGTCAAGTATGTGGTAAAACTGGACACTTAGCAGTTGTTTGCTATTACTGCTTTGAGAAGAATTTGAATAACTCTCAAAACTGTGGAAATGACTCATCAAGTCACAATAAAAACAAGTACTCCAACGGTAATCTAACTGCTTTGATAGATACCCCTGAACATTTCCAAGATTCCTCATGGTACCTTGATAGTGGATCCACGAATCTTTTTACATCTGATTTGGAAATCTGGCTATCAAATATGAATATGGAG

mRNA sequence

ATGCTTCAACAAACAAGAAAAGGAAGCTCCAAGATGGCCGAATATCTGACTTTAATGAAACGCTTTGCTGATAATTTATATTTGGTAGGTTCCCCAGTTAGTACAAAAAATCTAATCTTATACGTGATTACAGGACTTGATGAAGAGTACACTCCCATTAGGCAAAGGCAGGGCCGTAGTGGAGGTTCATCCAAGCTAATTTGTCAAGTATGTGGTAAAACTGGACACTTAGCAGTTGTTTGCTATTACTGCTTTGAGAAGAATTTGAATAACTCTCAAAACTGTGGAAATGACTCATCAAGTCACAATAAAAACAAGTACTCCAACGGTAATCTAACTGCTTTGATAGATACCCCTGAACATTTCCAAGATTCCTCATGGTACCTTGATAGTGGATCCACGAATCTTTTTACATCTGATTTGGAAATCTGGCTATCAAATATGAATATGGAG

Coding sequence (CDS)

ATGCTTCAACAAACAAGAAAAGGAAGCTCCAAGATGGCCGAATATCTGACTTTAATGAAACGCTTTGCTGATAATTTATATTTGGTAGGTTCCCCAGTTAGTACAAAAAATCTAATCTTATACGTGATTACAGGACTTGATGAAGAGTACACTCCCATTAGGCAAAGGCAGGGCCGTAGTGGAGGTTCATCCAAGCTAATTTGTCAAGTATGTGGTAAAACTGGACACTTAGCAGTTGTTTGCTATTACTGCTTTGAGAAGAATTTGAATAACTCTCAAAACTGTGGAAATGACTCATCAAGTCACAATAAAAACAAGTACTCCAACGGTAATCTAACTGCTTTGATAGATACCCCTGAACATTTCCAAGATTCCTCATGGTACCTTGATAGTGGATCCACGAATCTTTTTACATCTGATTTGGAAATCTGGCTATCAAATATGAATATGGAG

Protein sequence

MLQQTRKGSSKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPIRQRQGRSGGSSKLICQVCGKTGHLAVVCYYCFEKNLNNSQNCGNDSSSHNKNKYSNGNLTALIDTPEHFQDSSWYLDSGSTNLFTSDLEIWLSNMNME

Homology

[Close]

BLAST of ClCG01G011620 vs. TrEMBL
Match: A0A151QZ78_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_043331 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-10
Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 1


Query: 7   KGSSKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPIRQRQGRSGGSSKL 66
           K +  +AEYL  +K+  + L  +G+P+S ++ I  +  GLDE+Y       G      ++
Sbjct: 104 KKTGSIAEYLVQVKQIVETLAAIGAPLSVEDHIDAIFDGLDEDY------DGFITSWQRI 163

Query: 67  ICQVCGKTGHLAVVCYYCFEKNLNNSQNCGNDSSSHNKNKYSNGNLTALIDTPEHFQDSS 126
            CQ+CGK GH A  C+  F++NL + +   ++++     +  +  + A   T     D +
Sbjct: 164 QCQLCGKLGHSAYHCWSRFDENLPDPKTTQHNTTDAVIQEPLHQAMIATSATQSSL-DDT 223

Query: 127 WYLDSGSTNLFTSDL 142
           WY D+G+TN FT+DL
Sbjct: 224 WYPDTGATNHFTNDL 231

[Close]

BLAST of ClCG01G011620 vs. TrEMBL
Match: Q2QSB3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g24710 PE=4 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 36/138 (26.09%), Postives = 64/138 (46.38%), Query Frame = 1


Query: 5   TRKGSSKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPIRQRQGRSGGSS 64
           TRKG+ K+  Y+  MK F+D +   G P+  + ++ Y++ GLDEEY P            
Sbjct: 130 TRKGNLKITYYINRMKSFSDEMAAAGKPMDDEEIVAYILAGLDEEYDP------------ 189

Query: 65  KLICQVCGKTGHLAVVCYYCFEKNLNNSQNCGNDSSSHNKNKYSNGNLTALIDTPEHFQD 124
             +  +CGK GH+   C+Y + ++    ++    ++ H  N                  D
Sbjct: 190 --VVSLCGKVGHMGGNCWYRYNEDFVPEKSAA--AAIHGNN-----------------TD 234

Query: 125 SSWYLDSGSTNLFTSDLE 143
           ++WY D  +T+  T +L+
Sbjct: 250 TNWYADMAATDHITGELD 234

[Close]

BLAST of ClCG01G011620 vs. TrEMBL
Match: A0A151S6M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_027809 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-07
Identity = 42/141 (29.79%), Postives = 63/141 (44.68%), Query Frame = 1


Query: 10  SKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPIRQRQ---GRSGG---- 69
           +++  Y   +++  +   L  +P S  + ILY   G    +   R  Q   G  GG    
Sbjct: 109 AQLLTYENRLEQINNQSNLTLNPSSNISTILYNRRGKSNAFGGGRGGQINRGARGGRGRG 168

Query: 70  ---SSKLICQVCGKTGHLAVVCYYCFEKNLNNSQNCGNDSSSHNKNKYSNGNLTALIDTP 129
                +++CQVC K GH A  CY+ F KN        +D     K+K  N N  A + +P
Sbjct: 169 RATKDRIVCQVCCKPGHAASHCYHRFNKNYIGQ---NSDEQKSEKDKEQNYNFNAYVASP 228

Query: 130 EHFQDSSWYLDSGSTNLFTSD 141
              +D  WY DSG++N  T D
Sbjct: 229 STVEDLDWYFDSGASNHVTYD 246

[Close]

BLAST of ClCG01G011620 vs. TrEMBL
Match: A0A151S6M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_027809 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 1


Query: 4  QTRKGSSKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPI 54
          +TRKG  KM EYLT MK  AD+L L GS VST +L+   + GLD EY PI
Sbjct: 43 RTRKGGLKMEEYLTKMKEIADDLALAGSSVSTMDLVTQTLAGLDNEYNPI 92

HSP 2 Score: 63.5 bits (153), Expect = 2.5e-07
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 1   MLQQTRKGSSKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPI 54
           +LQ TRKG+ +M EYL++MK+  +N+ L GSP+S ++L  YV+ GLD EY PI
Sbjct: 195 ILQNTRKGTMRMTEYLSMMKQTLENMQLAGSPISHEDLFSYVLVGLDVEYIPI 247

[Close]

BLAST of ClCG01G011620 vs. TrEMBL
Match: A5C2Y5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038015 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 36/109 (33.03%), Postives = 56/109 (51.38%), Query Frame = 1


Query: 3   QQTRKGSSKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPIRQRQGRSGG 62
           Q T+KGS  M +Y+  +K   DNL  +G PV+ ++ IL ++ GL  +Y         S  
Sbjct: 48  QTTKKGSLSMMDYILKLKTLVDNLAAIGEPVTNRDHILQLLGGLGADY----NSXVASLT 107

Query: 63  SSKLICQVCGKTGHLAVVCYYCFEKNLNNSQNCGNDSSSHNKNKYSNGN 112
           + +  CQ+CGK GH    CY+ F+ N     N  +DS+   K+    G+
Sbjct: 108 TREDECQLCGKFGHTVGRCYHRFDINF-QGXNAKSDSTPVLKSNSYKGS 151

[Close]

BLAST of ClCG01G011620 vs. NCBI nr
Match: gi|1012323494|gb|KYP35620.1| (hypothetical protein KK1_043331 [Cajanus cajan])

HSP 1 Score: 72.8 bits (177), Expect = 5.8e-10
Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 1


Query: 7   KGSSKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPIRQRQGRSGGSSKL 66
           K +  +AEYL  +K+  + L  +G+P+S ++ I  +  GLDE+Y       G      ++
Sbjct: 104 KKTGSIAEYLVQVKQIVETLAAIGAPLSVEDHIDAIFDGLDEDY------DGFITSWQRI 163

Query: 67  ICQVCGKTGHLAVVCYYCFEKNLNNSQNCGNDSSSHNKNKYSNGNLTALIDTPEHFQDSS 126
            CQ+CGK GH A  C+  F++NL + +   ++++     +  +  + A   T     D +
Sbjct: 164 QCQLCGKLGHSAYHCWSRFDENLPDPKTTQHNTTDAVIQEPLHQAMIATSATQSSL-DDT 223

Query: 127 WYLDSGSTNLFTSDL 142
           WY D+G+TN FT+DL
Sbjct: 224 WYPDTGATNHFTNDL 231

[Close]

BLAST of ClCG01G011620 vs. NCBI nr
Match: gi|108862594|gb|ABA97707.2| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 36/138 (26.09%), Postives = 64/138 (46.38%), Query Frame = 1


Query: 5   TRKGSSKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPIRQRQGRSGGSS 64
           TRKG+ K+  Y+  MK F+D +   G P+  + ++ Y++ GLDEEY P            
Sbjct: 130 TRKGNLKITYYINRMKSFSDEMAAAGKPMDDEEIVAYILAGLDEEYDP------------ 189

Query: 65  KLICQVCGKTGHLAVVCYYCFEKNLNNSQNCGNDSSSHNKNKYSNGNLTALIDTPEHFQD 124
             +  +CGK GH+   C+Y + ++    ++    ++ H  N                  D
Sbjct: 190 --VVSLCGKVGHMGGNCWYRYNEDFVPEKSAA--AAIHGNN-----------------TD 234

Query: 125 SSWYLDSGSTNLFTSDLE 143
           ++WY D  +T+  T +L+
Sbjct: 250 TNWYADMAATDHITGELD 234

[Close]

BLAST of ClCG01G011620 vs. NCBI nr
Match: gi|698478226|ref|XP_009786285.1| (PREDICTED: uncharacterized protein LOC104234421, partial [Nicotiana sylvestris])

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08
Identity = 46/141 (32.62%), Postives = 70/141 (49.65%), Query Frame = 1


Query: 2   LQQTRKGSSKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPI--RQRQGR 61
           LQ T+K S  +A+YL  ++  +D L + GSPV+   LI+ +++GL  EY  I    +Q R
Sbjct: 133 LQNTKKASKTIAKYLQEVRSLSDALKVAGSPVNDDELIVKILSGLGPEYREISAANQQNR 192

Query: 62  SGGSSKLICQVCGKTGHLAVVCYYCFEKNLNNSQNCGNDSSSHNKNKYSNGNLTALIDTP 121
                 + CQ+C K GH A VC                 S SHN  +     +++L  T 
Sbjct: 193 RQFKKSVKCQLCQKFGHTADVC----------------RSKSHNHLEAQANFVSSLQST- 252

Query: 122 EHFQDSSWYLDSGSTNLFTSD 141
                +SW LDSG+T+  T++
Sbjct: 253 ----GNSWVLDSGATHHVTTE 252

[Close]

BLAST of ClCG01G011620 vs. NCBI nr
Match: gi|955303099|ref|XP_014630772.1| (PREDICTED: uncharacterized protein LOC106798691 [Glycine max])

HSP 1 Score: 65.9 bits (159), Expect = 7.1e-08
Identity = 35/87 (40.23%), Postives = 44/87 (50.57%), Query Frame = 1


Query: 56  RQGRSGGSSKLICQVCGKTGHLAVVCYYCFEKNLNNSQNCGNDSSSHNKNKYSNGNLTAL 115
           R GR  G SK  CQVC K GH AV C+Y ++K+   S    N   +H          +A 
Sbjct: 158 RGGRGRGRSKPTCQVCNKFGHTAVQCFYRYDKSYTESNAENNTQENH----------SAF 217

Query: 116 IDTPEHFQDSSWYLDSGSTNLFTSDLE 143
           I +P H QD  WY DSG++N  T   E
Sbjct: 218 IASPYHGQDYEWYFDSGASNHVTHQNE 234

[Close]

BLAST of ClCG01G011620 vs. NCBI nr
Match: gi|955303099|ref|XP_014630772.1| (PREDICTED: uncharacterized protein LOC106798691 [Glycine max])

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 35/108 (32.41%), Postives = 53/108 (49.07%), Query Frame = 1


Query: 5   TRKGSSKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPIRQRQGRSGGSS 64
           TRKG  KM +YL  MK  AD L L GSP+S  +L +  + GLD +Y P+  +        
Sbjct: 44  TRKGEMKMDQYLLKMKNLADKLKLAGSPISNSDLTIQTLNGLDADYNPVVVKLSDQINLG 103

Query: 65  KLICQVCGKTGHLAVVCYYCFEKNLNNSQNCGNDSSSHNKNK-YSNGN 112
            +  Q         ++ +    + LNN  N   ++S++  +K YS GN
Sbjct: 104 WVDLQA-------QLLAFESRIEQLNNFSNLSMNASANLASKTYSRGN 144

HSP 2 Score: 63.5 bits (153), Expect = 3.5e-07
Identity = 42/141 (29.79%), Postives = 63/141 (44.68%), Query Frame = 1


Query: 10  SKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPIRQRQ---GRSGG---- 69
           +++  Y   +++  +   L  +P S  + ILY   G    +   R  Q   G  GG    
Sbjct: 109 AQLLTYENRLEQINNQSNLTLNPSSNISTILYNRRGKSNAFGGGRGGQINRGARGGRGRG 168

Query: 70  ---SSKLICQVCGKTGHLAVVCYYCFEKNLNNSQNCGNDSSSHNKNKYSNGNLTALIDTP 129
                +++CQVC K GH A  CY+ F KN        +D     K+K  N N  A + +P
Sbjct: 169 RATKDRIVCQVCCKPGHAASHCYHRFNKNYIGQ---NSDEQKSEKDKEQNYNFNAYVASP 228

Query: 130 EHFQDSSWYLDSGSTNLFTSD 141
              +D  WY DSG++N  T D
Sbjct: 229 STVEDLDWYFDSGASNHVTYD 246

The following BLAST results are available for this feature:

BLAST of ClCG01G011620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151QZ78_CAJCA	4.1e-10	31.11	Uncharacterized protein OS=Cajanus cajan GN=KK1_043331 PE=4 SV=1	[more]
Q2QSB3_ORYSJ	1.0e-08	26.09	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]
A0A151S6M8_CAJCA	2.5e-07	29.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151S6M8_CAJCA	3.6e-06	58.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A5C2Y5_VITVI	3.6e-06	33.03	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038015 PE=4 SV=1	[more]

BLAST of ClCG01G011620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012323494\|gb\|KYP35620.1\|	5.8e-10	31.11	hypothetical protein KK1_043331 [Cajanus cajan]	[more]
gi\|108862594\|gb\|ABA97707.2\|	1.4e-08	26.09	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]
gi\|698478226\|ref\|XP_009786285.1\|	1.9e-08	32.62	PREDICTED: uncharacterized protein LOC104234421, partial [Nicotiana sylvestris]	[more]
gi\|955303099\|ref\|XP_014630772.1\|	7.1e-08	40.23	PREDICTED: uncharacterized protein LOC106798691 [Glycine max]	[more]
gi\|955303099\|ref\|XP_014630772.1\|	1.3e-04	32.41	PREDICTED: uncharacterized protein LOC106798691 [Glycine max]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G011620.1	ClCG01G011620.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G011620	Silver-seed gourd	carwcgB0000
ClCG01G011620	Cucumber (Chinese Long) v3	cucwcgB024
ClCG01G011620	Watermelon (97103) v2	wcgwmbB089
ClCG01G011620	Wax gourd	wcgwgoB246
ClCG01G011620	Cucumber (Gy14) v1	cgywcgB552
ClCG01G011620	Cucurbita maxima (Rimu)	cmawcgB180
ClCG01G011620	Cucurbita maxima (Rimu)	cmawcgB341
ClCG01G011620	Cucurbita moschata (Rifu)	cmowcgB171
ClCG01G011620	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G011620	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G011620	Melon (DHL92) v3.5.1	mewcgB133
ClCG01G011620	Watermelon (97103) v1	wcgwmB155
ClCG01G011620	Cucurbita pepo (Zucchini)	cpewcgB006
ClCG01G011620	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G011620	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G011620	Melon (DHL92) v3.6.1	medwcgB133