ClCG01G011370 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G011370
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 18650152 .. 18651361 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTTGCATTTCTCATCTCCATTCCAATGGGGCTTTTCAGAACCACAGTTGCCAATCAAAGCCTTTGCAAGTCCGTCAATTTCACTAATTTTTTTGCCATTGCTTCGCTTATCTTCAGCAAAAATCTCTCCTATGGTTTGTCGACCTTATAGATGAATTTGTACAAAAGTGATCGATGTTCTTCCTTTTCTTGATGAAACCCATATCAGTAATAACTTCATTTCCCTCTTTAGCCAACGAAAATTTTCCCCTGGGATGCAAAAGCTCCATCAAATTTTCTTCAAGCTACCGTATATTCCATCAAACTTCTCTAACTTTCTTTTGGAAGAACGACTAACCTTCCTTTGTCATTATCCCTGAAGTGCTTCCCACTTGAAACTGTTTTGTTGGTCTCTATATTTCTCTGCTGAAATGTATTACATGGCTGATCCTAAACATCTTTTCTTTGCATTTGTTGTCTTTTCTCCATTTTATGTTTAGCTTTGGTGGCCATTGTAACAGCTTCTACTAAAGAACTTATTGGTTAAAGTTCCATGTGATCTTGAATTTCATCTTTGAGGCAATCTATGAACCGCGTGATTTGATAATTTTCAATTTCGTTTATTCTTGTTCAAGCCTCCAACCTATGGAATTCCTCTATTAATCGGCTACACTGCGATTCCTTTGTTTACACTTCTGATATTGTTGCCCAACAAAAATCTAGCTTTCATCATCCTTAACATTCGCGACTAACTTTTAATGGGGTTCTTTCCCACGATCTTCGATTAAGTGAATATGGTCCCACCATGAAGAAGCTCTTGGTTTAAAAGTCATCAACTTCACCTTTTTATATTTTGGAGTATTCGTATAATTAAAGAAACTCTCTACACTCTTGGCCGAATCAAGAAAGGCTTCCAAATCAATTTTTTCGGTTAAATGTAGGCAAATCAATCTTCAACATTTGTAATCACTATGGTGGTCCTCCCTCTCTTGAGCATCTCTCACCAATTGTCTTTCTTCACAAACTCTTCAAATTAGTTCCCCTTCATCCCTTGAAAAATCAGAATCTAGCTCATCCCAGTCTAGTTATTGCTTTCTTTATCCTTCTTGTTTCGCTTGAATTCTCAATGGGGCATAGTAACATCCTCTATCAGGGGCATAGTAACATCCTCTATCATTAAATCTTTCTCTGTTGCTGATTTCAGGCCTCAGCTCTTCCAATCATAG

mRNA sequence

ATGGAACTTGCATTTCTCATCTCCATTCCAATGGGGCTTTTCAGAACCACAGTTGCCAATCAAAGCCTTTGCAAGTCCGTCAATTTCACTAATTTTTTTGCCATTGCTTCGCTTATCTTCAGCAAAAATCTCTCCTATGTGATCGATGTTCTTCCTTTTCTTGATGAAACCCATATCAGTAATAACTTCATTTCCCTCTTTAGCCAACGAAAATTTTCCCCTGGGATGCAAAAGCTCCATCAAATTTTCTTCAAGCTACCGCCTCAGCTCTTCCAATCATAG

Coding sequence (CDS)

ATGGAACTTGCATTTCTCATCTCCATTCCAATGGGGCTTTTCAGAACCACAGTTGCCAATCAAAGCCTTTGCAAGTCCGTCAATTTCACTAATTTTTTTGCCATTGCTTCGCTTATCTTCAGCAAAAATCTCTCCTATGTGATCGATGTTCTTCCTTTTCTTGATGAAACCCATATCAGTAATAACTTCATTTCCCTCTTTAGCCAACGAAAATTTTCCCCTGGGATGCAAAAGCTCCATCAAATTTTCTTCAAGCTACCGCCTCAGCTCTTCCAATCATAG

Protein sequence

MELAFLISIPMGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNLSYVIDVLPFLDETHISNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS
Homology
[Close]
BLAST of ClCG01G011370 vs. TrEMBL
Match: A0A0A0KMI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021350 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-15
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = 1 

Query: 11 MGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNLSY-----------VIDVLPFLDETHI 70
          M LF+TT+AN SL KS  FTN FA+AS IFSKNLSY           VI+VLP LDET+I
Sbjct: 1  MALFKTTLANPSLSKSGKFTNSFAVASRIFSKNLSYVSQPYRSICTEVINVLPPLDETYI 60

Query: 71 SNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
          SNNFISLFSQ+KFS    +L  +   L P++ ++
Sbjct: 61 SNNFISLFSQQKFSLDDPQLKNLAPSLNPRIVET 94

[Close]
BLAST of ClCG01G011370 vs. NCBI nr
Match: gi|778698058|ref|XP_011654469.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-19
Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 1 

Query: 1   MELAFLISIPMGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNLSY-----------VID 60
           MEL FLI IPM LF+TT+AN SL KS  FTN FA+AS IFSKNLSY           VI+
Sbjct: 1   MELEFLIYIPMALFKTTLANPSLSKSGKFTNSFAVASRIFSKNLSYVSQPYRSICTEVIN 60

Query: 61  VLPFLDETHISNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
           VLP LDET+ISNNFISLFSQ+KFS    +L  +   L P++ ++
Sbjct: 61  VLPPLDETYISNNFISLFSQQKFSLDDPQLKNLAPSLNPRIVET 104

[Close]
BLAST of ClCG01G011370 vs. NCBI nr
Match: gi|700194425|gb|KGN49602.1| (hypothetical protein Csa_5G021350 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-15
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = 1 

Query: 11 MGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNLSY-----------VIDVLPFLDETHI 70
          M LF+TT+AN SL KS  FTN FA+AS IFSKNLSY           VI+VLP LDET+I
Sbjct: 1  MALFKTTLANPSLSKSGKFTNSFAVASRIFSKNLSYVSQPYRSICTEVINVLPPLDETYI 60

Query: 71 SNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
          SNNFISLFSQ+KFS    +L  +   L P++ ++
Sbjct: 61 SNNFISLFSQQKFSLDDPQLKNLAPSLNPRIVET 94

The following BLAST results are available for this feature:
BLAST of ClCG01G011370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMI5_CUCSA3.4e-1555.32Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021350 PE=4 SV=1[more]
BLAST of ClCG01G011370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778698058|ref|XP_011654469.1|3.2e-1957.69PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitoc... [more]
gi|700194425|gb|KGN49602.1|4.8e-1555.32hypothetical protein Csa_5G021350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G011370.1ClCG01G011370.1mRNA