ClCG01G011260 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G011260
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	DNA-directed RNA polymerase subunit beta''
Location	CG_Chr01 : 18299926 .. 18302636 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGTGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTAGTTTTCCGATGTAATTGAGGGCAAATGGGAAGATTTGGGGAGACTCTGCTTGGCAAACAGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCAAAATCGCAATAGAGCTTTTCCAGACATTTTGAATTCGTGGTCTAATTCGACAACATTTTGCTTCGGACATAGAAGTTACTAAGAGTCAAATTCGAGAAAAAGAATTCATTGTATGGGAAATACTTAAGGAAGTTATGCAAGAAAGGACATCTTGTATTACTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCATGCCTTCCAACTTATTTTAGTGGATGGACGTGCTATTTATTTACATCCATTAGTTTGTAAGGGATTCAATGTAGACTTTGATGGGGATCAAGTGGTTGTTCATGTACCTTTATCTTTGGAGCCTCATGCGGAGGTGCATTTACTTATGTATTCTCATATAAATCTCGTCTTCAGCTATTGGGGGATCCCATTTTTGTACCAACTCAAGATATGCTTATTGGACTCTGTGTATTAACAAGCGGAAATCGCCGAGGTATTTGTGCAAATTGATATAATCCATGTAATCGCAAAAATCATCAAAATGAAAAAATTGACAATCGAAAGAACCCTTTTCTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAAAAAAGGATCAATTTAGATAGTCCTTTGTGGCTCCGATGGTGACTAGACCAACGCATTATTGCTTCAAAAGAAGCCCCTCTCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTACTATCTAATAGTAAAAAGTATATAAAAAAGAAACTTTTTGTATCTACATTTGAACCACTCTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGTCGGGTCTGCTCATCTGGTACCTAATCTTCTGGTATCTCACTCATCTAAGTAATTATATGACACCGTTATGAATTCTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTAAATTTCCATGTGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTCAAAACTATTATTGAACCCCACTCAGCGAAATATGGAGGTACTTATGGCAGAATGGGCCGATTTGGTCTTTCACAATAAAGTGATAGTGGAACTGCCATTAAACAACTTATTAGCAGATTAATAGATCACTTCTGAATGGCATATACATCTTGGATCAACTAAAGACTCTGGGATTCTAGCAAACCACTGCTACATCCATTTGATTAAGAATTGATGATCTTTTAACAAGCCCTTCTAAGGGATGACTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCCTCATTATGGAAATGTACATGCAGTAGAAAAATTACGCCAGTCCATTGAGATGTGGTATACTACAAGTGAATATTTGTGACAAGAAATGAATCCTAATTTTAGGATGACCGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGAATCTCAAGTACACCAATTAGAAGGTATGAGAGGATTAATGTCAGATCCATAAGGAAAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGAAATATATAATTTCTTGCTATGGAGCACAAAAAGGAGTTGTGGATTGTTGTATGAACATCGGATGCTGGATATCTTATACACAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACTGATTGTGGGACCATCTGAGAGATTTCAGTTAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACAATATATATATGGGCTCGCGATGTATTGGCATTCAAAATCAAGATATTGGTTTTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTAGTCGAACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGTCGATTATGTTATGGACGAAGTCCTACTCACGGGGAGTTGGTCAAATTGAGAGAACCCTTAGGTATTATTGCAGTTCAATCTATTGGAGAATCGGGTACTCAACTAACATTAAGAACTTTTCATACTGGCGGAGTATTCATAGGGGGGACTGCAAAACATATACGAGCTCCTTCTAATGGAAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGCCATGGGCATCTTGTATTTTTTTTTCTTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTGTTCTACCAAAAAAGTTTACTTTTACTTCAAAACGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGCGTAAGAACATACACTTTTAATTCAAAAGAGAGGGTTCGAAAACATATTTATTCTGATTTAGAGGGAGAAATGCATTGGAGTACCGATGTGTATCATGCACCCGAATTTACATAAAGTAATGTCCATTTCTTACCAAAAAAAGTCATTTATGAATGTTATCAGGAGGTTCGTGCGAATGCAGTGTAG

mRNA sequence

ATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGTGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAATTTGGGGAGACTCTGCTTGGCAAACAGGTCGATTATTCAGGACGTTCTGTGATTGTTAAGTTACTAAGAGTCAAATTCGAGAAAAAGAATTCATTGTATGGGAAATACTTAAGGAAGTTATGCAAGAAAGGACATCTTGGATTCAATGTAGACTTTGATGGGGATCAAGTGGTTGTTCATGTACCTTTATCTTTGGAGCCTCATGCGGAGCTATTGGGGGATCCCATTTTTGTACCAACTCAAGATATGCTTATTGGACTCTGTGTATTAACAAGCGGAAATCGCCGAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCCTCATTATGGAAATGTACATGCAGTAGAAAAATTACGCCAGTCCATTGAGATGTGGTATACTACAATCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGAATCTCAAGTACACCAATTAGAAGAGATTTCAGTTAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACAATATATATATGGGCTCGCGATGTATTGGCATTCAAAATCAAGATATTGGTTTTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTAGTCGAACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGTCGATTATGTTATGGACGAAGTCCTACTCACGGGGAGTTGGTCAAATTGAGAGAACCCTTAGGTATTATTGCAGTTCAATCTATTGGAGAATCGGGTACTCAACTAACATTAAGAACTTTTCATACTGGCGGAGTATTCATAGGGGGGACTGCAAAACATATACGAGCTCCTTCTAATGGAAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGCCATGGGCATCTTGAGGTTCGTGCGAATGCAGTGTAG

Coding sequence (CDS)

ATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGTGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAATTTGGGGAGACTCTGCTTGGCAAACAGGTCGATTATTCAGGACGTTCTGTGATTGTTAAGTTACTAAGAGTCAAATTCGAGAAAAAGAATTCATTGTATGGGAAATACTTAAGGAAGTTATGCAAGAAAGGACATCTTGGATTCAATGTAGACTTTGATGGGGATCAAGTGGTTGTTCATGTACCTTTATCTTTGGAGCCTCATGCGGAGCTATTGGGGGATCCCATTTTTGTACCAACTCAAGATATGCTTATTGGACTCTGTGTATTAACAAGCGGAAATCGCCGAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCCTCATTATGGAAATGTACATGCAGTAGAAAAATTACGCCAGTCCATTGAGATGTGGTATACTACAATCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGAATCTCAAGTACACCAATTAGAAGAGATTTCAGTTAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACAATATATATATGGGCTCGCGATGTATTGGCATTCAAAATCAAGATATTGGTTTTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTAGTCGAACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGTCGATTATGTTATGGACGAAGTCCTACTCACGGGGAGTTGGTCAAATTGAGAGAACCCTTAGGTATTATTGCAGTTCAATCTATTGGAGAATCGGGTACTCAACTAACATTAAGAACTTTTCATACTGGCGGAGTATTCATAGGGGGGACTGCAAAACATATACGAGCTCCTTCTAATGGAAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGCCATGGGCATCTTGAGGTTCGTGCGAATGCAGTGTAG

Protein sequence

MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKFGETLLGKQVDYSGRSVIVKLLRVKFEKKNSLYGKYLRKLCKKGHLGFNVDFDGDQVVVHVPLSLEPHAELLGDPIFVPTQDMLIGLCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTTIHIMSFSGARGNESQVHQLEEISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISSRTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFIGGTAKHIRAPSNGKIKFNEDLVHPTRTRHGHLEVRANAV

Homology

[Close]

BLAST of ClCG01G011260 vs. Swiss-Prot
Match: RPOC2_CUCSA (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 9.0e-75
Identity = 135/151 (89.40%), Postives = 140/151 (92.72%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           I VSPGNRMIPERIFIQTLIGRVLAD+IYMG RCIG++NQDIG GLINRFITFQTQPIS 
Sbjct: 230 ILVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISI 289

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 290 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 349

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+HIRAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 350 GGTAEHIRAPSNGKIKFNEDLVHPTRTRHGH 380

HSP 2 Score: 94.7 bits (234), Expect = 2.0e-18
Identity = 52/85 (61.18%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAEQQSLILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 66  LLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRM 125

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +HIMSFSGARGN SQVHQL
Sbjct: 126 TDPFNPVHIMSFSGARGNASQVHQL 150

[Close]

BLAST of ClCG01G011260 vs. Swiss-Prot
Match: RPOC2_MORIN (DNA-directed RNA polymerase subunit beta'' OS=Morus indica GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 4.2e-72
Identity = 129/154 (83.77%), Postives = 140/154 (90.91%), Query Frame = 1


Query: 184 LEEISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQP 243
           ++ ISVSP N M+PERIFIQTLIGRVLAD IY+GSRCI ++NQDIG GL+NRFITFQTQP
Sbjct: 227 IQGISVSPPNGMMPERIFIQTLIGRVLADYIYIGSRCIAVRNQDIGIGLVNRFITFQTQP 286

Query: 244 ISSRTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGG 303
           IS RTPFTC+STSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGG
Sbjct: 287 ISIRTPFTCKSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGG 346

Query: 304 VFIGGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           VF GGTA+H+RAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 347 VFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGH 380

HSP 2 Score: 91.7 bits (226), Expect = 1.7e-17
Identity = 50/85 (58.82%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAEQQ LILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 66  LLTIPSKGWLVQDAEQQRLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRM 125

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +H+MSFSGARGN SQVHQL
Sbjct: 126 TDPFNPVHMMSFSGARGNASQVHQL 150

[Close]

BLAST of ClCG01G011260 vs. Swiss-Prot
Match: RPOC2_EUCGG (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-71
Identity = 128/151 (84.77%), Postives = 138/151 (91.39%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           +SVSP N M+PERIFIQTLIGRVLAD+IYMG RCI I+NQDIG GL+NRFITF+TQPIS 
Sbjct: 230 VSVSPRNGMMPERIFIQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRTQPISI 289

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 290 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 349

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+H+RAPSNGKIKFN+DLVHPTRTRHGH
Sbjct: 350 GGTAEHVRAPSNGKIKFNDDLVHPTRTRHGH 380

HSP 2 Score: 94.7 bits (234), Expect = 2.0e-18
Identity = 52/85 (61.18%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAEQQSLILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 66  LLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRM 125

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +HIMSFSGARGN SQVHQL
Sbjct: 126 TDPFNPVHIMSFSGARGNASQVHQL 150

[Close]

BLAST of ClCG01G011260 vs. Swiss-Prot
Match: RPOC2_CARPA (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 6.1e-71
Identity = 128/151 (84.77%), Postives = 137/151 (90.73%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           ISVSP NR +PERIFIQTLIGRVLAD+IYMG RCI I+NQDIG GL+NRFITF+TQ IS 
Sbjct: 226 ISVSPKNRTMPERIFIQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRTQSISI 285

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 286 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 345

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+H+R+PSNGKIKFNEDLVHPTRTRHGH
Sbjct: 346 GGTAEHVRSPSNGKIKFNEDLVHPTRTRHGH 376

HSP 2 Score: 94.7 bits (234), Expect = 2.0e-18
Identity = 52/85 (61.18%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAEQQSLILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 62  LLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRV 121

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +HIMSFSGARGN SQVHQL
Sbjct: 122 TDPFNPVHIMSFSGARGNASQVHQL 146

[Close]

BLAST of ClCG01G011260 vs. Swiss-Prot
Match: RPOC2_TOBAC (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum GN=rpoC2 PE=3 SV=2)

HSP 1 Score: 269.2 bits (687), Expect = 6.1e-71
Identity = 128/151 (84.77%), Postives = 136/151 (90.07%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           ISVSP N M+PERIFIQTLIGRVLAD+IYMG RCI  +NQDIG GL+NRFITF+ QPIS 
Sbjct: 230 ISVSPRNGMMPERIFIQTLIGRVLADDIYMGPRCIATRNQDIGIGLVNRFITFRAQPISI 289

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 290 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 349

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+H+RAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 350 GGTAEHVRAPSNGKIKFNEDLVHPTRTRHGH 380

HSP 2 Score: 94.7 bits (234), Expect = 2.0e-18
Identity = 52/85 (61.18%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAEQQSLILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 66  LLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRM 125

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +HIMSFSGARGN SQVHQL
Sbjct: 126 TDPFNPVHIMSFSGARGNASQVHQL 150

[Close]

BLAST of ClCG01G011260 vs. TrEMBL
Match: A0A109X1E5_GYNPE (DNA-directed RNA polymerase subunit beta'' OS=Gynostemma pentaphyllum GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 2.0e-73
Identity = 136/151 (90.07%), Postives = 143/151 (94.70%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           ISVSPGNRMIPERIFIQTLIGRVLAD+IYMG RCIGI+NQDIG GL+NRFITFQTQPIS 
Sbjct: 226 ISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLVNRFITFQTQPISI 285

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 286 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 345

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+HIRAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 346 GGTAEHIRAPSNGKIKFNEDLVHPTRTRHGH 376

[Close]

BLAST of ClCG01G011260 vs. TrEMBL
Match: A0A109X1E5_GYNPE (DNA-directed RNA polymerase subunit beta'' OS=Gynostemma pentaphyllum GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.6e-16
Identity = 51/85 (60.00%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAE+QSLILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 62  LLTIPSKGWLVQDAERQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRM 121

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +HIMSFSGARGN SQVHQL
Sbjct: 122 TDPFNPVHIMSFSGARGNASQVHQL 146

HSP 2 Score: 282.0 bits (720), Expect = 1.0e-72
Identity = 135/151 (89.40%), Postives = 142/151 (94.04%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           I VSPGNRMIPERIFIQTLIGRVLAD+IYMG RCIG++NQDIG GLINRFITFQTQPIS 
Sbjct: 226 ILVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISI 285

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 286 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 345

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+HIRAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 346 GGTAEHIRAPSNGKIKFNEDLVHPTRTRHGH 376

[Close]

BLAST of ClCG01G011260 vs. TrEMBL
Match: W8E7K6_9ROSI (DNA-directed RNA polymerase subunit OS=Cucumis hystrix GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 52/85 (61.18%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAEQQSLILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 62  LLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRM 121

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +HIMSFSGARGN SQVHQL
Sbjct: 122 TDPFNPVHIMSFSGARGNASQVHQL 146

HSP 2 Score: 281.6 bits (719), Expect = 1.3e-72
Identity = 136/151 (90.07%), Postives = 142/151 (94.04%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           ISVSP NRMIPERIFIQTLIGRVLAD+IYMG RCIGI+NQDIG GLINRFITFQTQPIS 
Sbjct: 230 ISVSPENRMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISI 289

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 290 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 349

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+HIRAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 350 GGTAEHIRAPSNGKIKFNEDLVHPTRTRHGH 380

[Close]

BLAST of ClCG01G011260 vs. TrEMBL
Match: A0A0S2IFH3_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita foetidissima GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 52/85 (61.18%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAEQQSLILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 66  LLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRM 125

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +HIMSFSGARGN SQVHQL
Sbjct: 126 TDPFNPVHIMSFSGARGNASQVHQL 150

HSP 2 Score: 281.6 bits (719), Expect = 1.3e-72
Identity = 136/151 (90.07%), Postives = 142/151 (94.04%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           ISVSP NRMIPERIFIQTLIGRVLAD+IYMG RCIGI+NQDIG GLINRFITFQTQPIS 
Sbjct: 230 ISVSPENRMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISI 289

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 290 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 349

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+HIRAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 350 GGTAEHIRAPSNGKIKFNEDLVHPTRTRHGH 380

[Close]

BLAST of ClCG01G011260 vs. TrEMBL
Match: A0A0S2IEB7_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita cordata GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 52/85 (61.18%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAEQQSLILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 66  LLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRM 125

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +HIMSFSGARGN SQVHQL
Sbjct: 126 TDPFNPVHIMSFSGARGNASQVHQL 150

HSP 2 Score: 281.6 bits (719), Expect = 1.3e-72
Identity = 136/151 (90.07%), Postives = 142/151 (94.04%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           ISVSP NRMIPERIFIQTLIGRVLAD+IYMG RCIGI+NQDIG GLINRFITFQTQPIS 
Sbjct: 230 ISVSPENRMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISI 289

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 290 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 349

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+HIRAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 350 GGTAEHIRAPSNGKIKFNEDLVHPTRTRHGH 380

[Close]

BLAST of ClCG01G011260 vs. TAIR10
Match: ATCG00170.1 (ATCG00170.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 256.5 bits (654), Expect = 2.3e-68
Identity = 124/153 (81.05%), Postives = 134/153 (87.58%), Query Frame = 1


Query: 187 ISVSPGN--RMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPI 246
           ISVSP N  RM+ ERIFIQTLIGRVLAD+IY+GSRC+  +NQD+G GL+NR ITF TQ I
Sbjct: 226 ISVSPRNKNRMMSERIFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGLVNRLITFGTQSI 285

Query: 247 SSRTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGV 306
           S RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGV
Sbjct: 286 SIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 345

Query: 307 FIGGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           F GGTA+H+RAP NGKIKFNEDLVHPTRTRHGH
Sbjct: 346 FTGGTAEHVRAPYNGKIKFNEDLVHPTRTRHGH 378

HSP 2 Score: 91.3 bits (225), Expect = 1.3e-18
Identity = 50/85 (58.82%), Postives = 52/85 (61.18%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAEQQS ILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 62  LLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRM 121

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +H+MSFSGARGN SQVHQL
Sbjct: 122 TDPFNPVHMMSFSGARGNASQVHQL 146

[Close]

BLAST of ClCG01G011260 vs. TAIR10
Match: ATCG00180.1 (ATCG00180.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 95.5 bits (236), Expect = 6.8e-20
Identity = 62/131 (47.33%), Postives = 76/131 (58.02%), Query Frame = 1


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK------------FGETLLGKQVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK            F ETLLGK+VDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIV-----KLLRVKFEKKNS--LYGKYLRKLCKKGHLGFNVDFDGDQVVVHVPLSLEPH 112
           SVIV      L R    ++ +  L+  ++ +   + HL  N+     Q+    P+  E  
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEIL 441

HSP 2 Score: 73.9 bits (180), Expect = 2.1e-13
Identity = 40/64 (62.50%), Postives = 40/64 (62.50%), Query Frame = 1


Query: 80  GFNVDFDGDQVVVHVPLSLEPHAEL--------------LGDPIFVPTQDMLIGLCVLTS 130
           GFN DFDGDQ+ VHVPLSLE  AE               +GDPI VPTQDMLIGL VLTS
Sbjct: 485 GFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTS 544

[Close]

BLAST of ClCG01G011260 vs. NCBI nr
Match: gi|1002166154|ref|YP_009236270.1| (DNA-directed RNA polymerase beta'' chain (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 284.3 bits (726), Expect = 2.9e-73
Identity = 136/151 (90.07%), Postives = 143/151 (94.70%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           ISVSPGNRMIPERIFIQTLIGRVLAD+IYMG RCIGI+NQDIG GL+NRFITFQTQPIS 
Sbjct: 226 ISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLVNRFITFQTQPISI 285

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 286 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 345

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+HIRAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 346 GGTAEHIRAPSNGKIKFNEDLVHPTRTRHGH 376

[Close]

BLAST of ClCG01G011260 vs. NCBI nr
Match: gi|1002166154|ref|YP_009236270.1| (DNA-directed RNA polymerase beta'' chain (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 93.2 bits (230), Expect = 9.5e-16
Identity = 51/85 (60.00%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAE+QSLILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 62  LLTIPSKGWLVQDAERQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRM 121

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +HIMSFSGARGN SQVHQL
Sbjct: 122 TDPFNPVHIMSFSGARGNASQVHQL 146

HSP 2 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 135/151 (89.40%), Postives = 142/151 (94.04%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           I VSPGNRMIPERIFIQTLIGRVLAD+IYMG RCIG++NQDIG GLINRFITFQTQPIS 
Sbjct: 226 ILVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISI 285

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 286 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 345

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+HIRAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 346 GGTAEHIRAPSNGKIKFNEDLVHPTRTRHGH 376

[Close]

BLAST of ClCG01G011260 vs. NCBI nr
Match: gi|126165906|ref|YP_247589.2| (RNA polymerase beta'' subunit [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 3.3e-16
Identity = 52/85 (61.18%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAEQQSLILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 62  LLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRM 121

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +HIMSFSGARGN SQVHQL
Sbjct: 122 TDPFNPVHIMSFSGARGNASQVHQL 146

HSP 2 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 135/151 (89.40%), Postives = 142/151 (94.04%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           I VSPGNRMIPERIFIQTLIGRVLAD+IYMG RCIG++NQDIG GLINRFITFQTQPIS 
Sbjct: 230 ILVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISI 289

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 290 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 349

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+HIRAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 350 GGTAEHIRAPSNGKIKFNEDLVHPTRTRHGH 380

[Close]

BLAST of ClCG01G011260 vs. NCBI nr
Match: gi|75317327|sp|Q4VZP3.1|RPOC2_CUCSA (RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' (chloroplast) [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 3.3e-16
Identity = 52/85 (61.18%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAEQQSLILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 66  LLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRM 125

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +HIMSFSGARGN SQVHQL
Sbjct: 126 TDPFNPVHIMSFSGARGNASQVHQL 150

HSP 2 Score: 281.6 bits (719), Expect = 1.9e-72
Identity = 136/151 (90.07%), Postives = 142/151 (94.04%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           ISVSP NRMIPERIFIQTLIGRVLAD+IYMG RCIGI+NQDIG GLINRFITFQTQPIS 
Sbjct: 230 ISVSPENRMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISI 289

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 290 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 349

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+HIRAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 350 GGTAEHIRAPSNGKIKFNEDLVHPTRTRHGH 380

[Close]

BLAST of ClCG01G011260 vs. NCBI nr
Match: gi|952955523|gb|ALO22869.1| (RpoC2 (plastid) [Cucurbita pedatifolia])

HSP 1 Score: 94.7 bits (234), Expect = 3.3e-16
Identity = 52/85 (61.18%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 120 LCVLTSGNRRVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEMWYTT-------------- 179
           L  + S    VQDAEQQSLILEKH HYGNVHAVEKLRQSIE+WY T              
Sbjct: 66  LLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRM 125

Query: 180 ------IHIMSFSGARGNESQVHQL 185
                 +HIMSFSGARGN SQVHQL
Sbjct: 126 TDPFNPVHIMSFSGARGNASQVHQL 150

HSP 2 Score: 281.6 bits (719), Expect = 1.9e-72
Identity = 136/151 (90.07%), Postives = 142/151 (94.04%), Query Frame = 1


Query: 187 ISVSPGNRMIPERIFIQTLIGRVLADNIYMGSRCIGIQNQDIGFGLINRFITFQTQPISS 246
           ISVSP NRMIPERIFIQTLIGRVLAD+IYMG RCIGI+NQDIG GLINRFITFQTQPIS 
Sbjct: 230 ISVSPENRMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISI 289

Query: 247 RTPFTCRSTSWICRLCYGRSPTHGELVKLREPLGIIAVQSIGESGTQLTLRTFHTGGVFI 306
           RTPFTCRSTSWICRLCYGRSPTHG+LV+L E +GIIA QSIGE GTQLTLRTFHTGGVF 
Sbjct: 290 RTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 349

Query: 307 GGTAKHIRAPSNGKIKFNEDLVHPTRTRHGH 338
           GGTA+HIRAPSNGKIKFNEDLVHPTRTRHGH
Sbjct: 350 GGTAEHIRAPSNGKIKFNEDLVHPTRTRHGH 380

The following BLAST results are available for this feature:

BLAST of ClCG01G011260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPOC2_CUCSA	9.0e-75	89.40	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1	[more]
RPOC2_MORIN	4.2e-72	83.77	DNA-directed RNA polymerase subunit beta'' OS=Morus indica GN=rpoC2 PE=3 SV=1	[more]
RPOC2_EUCGG	1.2e-71	84.77	DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu...	[more]
RPOC2_CARPA	6.1e-71	84.77	DNA-directed RNA polymerase subunit beta'' OS=Carica papaya GN=rpoC2 PE=3 SV=1	[more]
RPOC2_TOBAC	6.1e-71	84.77	DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum GN=rpoC2 PE=3 SV...	[more]

BLAST of ClCG01G011260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A109X1E5_GYNPE	2.0e-73	90.07	DNA-directed RNA polymerase subunit beta'' OS=Gynostemma pentaphyllum GN=rpoC2 P...	[more]
A0A109X1E5_GYNPE	6.6e-16	60.00	DNA-directed RNA polymerase subunit beta'' OS=Gynostemma pentaphyllum GN=rpoC2 P...	[more]
W8E7K6_9ROSI	2.3e-16	61.18	DNA-directed RNA polymerase subunit OS=Cucumis hystrix GN=rpoC2 PE=3 SV=1	[more]
A0A0S2IFH3_9ROSI	2.3e-16	61.18	DNA-directed RNA polymerase subunit OS=Cucurbita foetidissima GN=rpoC2 PE=3 SV=1	[more]
A0A0S2IEB7_9ROSI	2.3e-16	61.18	DNA-directed RNA polymerase subunit OS=Cucurbita cordata GN=rpoC2 PE=3 SV=1	[more]

BLAST of ClCG01G011260 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00170.1	2.3e-68	81.05	ATCG00170.1 DNA-directed RNA polymerase family protein	[more]
ATCG00180.1	6.8e-20	47.33	ATCG00180.1 DNA-directed RNA polymerase family protein	[more]

BLAST of ClCG01G011260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1002166154\|ref\|YP_009236270.1\|	2.9e-73	90.07	DNA-directed RNA polymerase beta'' chain (chloroplast) [Gynostemma pentaphyllum]	[more]
gi\|1002166154\|ref\|YP_009236270.1\|	9.5e-16	60.00	DNA-directed RNA polymerase beta'' chain (chloroplast) [Gynostemma pentaphyllum]	[more]
gi\|126165906\|ref\|YP_247589.2\|	3.3e-16	61.18	RNA polymerase beta'' subunit [Cucumis sativus]	[more]
gi\|75317327\|sp\|Q4VZP3.1\|RPOC2_CUCSA	3.3e-16	61.18	RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; Alt...	[more]
gi\|952955523\|gb\|ALO22869.1\|	3.3e-16	61.18	RpoC2 (plastid) [Cucurbita pedatifolia]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006592	RNA_pol_N
IPR007081	RNA_pol_Rpb1_5

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G011260.1	ClCG01G011260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 1..124 score: 1.
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 187..309 score: 3.5
None	No IPR available	GENE3D	G3DSA:2.40.40.20		coord: 80..104 score: 6.
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 114..334 score: 4.2
None	No IPR available	PANTHER	PTHR19376:SF38	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 114..334 score: 4.2
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 3..304 score: 1.35

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G011260	Cla97C01G010930	Watermelon (97103) v2	wcgwmbB089

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G011260	Watermelon (97103) v2	wcgwmbB093
ClCG01G011260	Wax gourd	wcgwgoB235
ClCG01G011260	Wax gourd	wcgwgoB241
ClCG01G011260	Watermelon (Charleston Gray)	wcgwcgB085
ClCG01G011260	Cucumber (Gy14) v1	cgywcgB321
ClCG01G011260	Cucumber (Gy14) v1	cgywcgB552
ClCG01G011260	Cucurbita maxima (Rimu)	cmawcgB180
ClCG01G011260	Cucurbita maxima (Rimu)	cmawcgB341
ClCG01G011260	Cucurbita maxima (Rimu)	cmawcgB578
ClCG01G011260	Cucurbita moschata (Rifu)	cmowcgB171
ClCG01G011260	Cucurbita moschata (Rifu)	cmowcgB342
ClCG01G011260	Wild cucumber (PI 183967)	cpiwcgB023
ClCG01G011260	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G011260	Wild cucumber (PI 183967)	cpiwcgB456
ClCG01G011260	Cucumber (Chinese Long) v2	cuwcgB020
ClCG01G011260	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G011260	Cucumber (Chinese Long) v2	cuwcgB435
ClCG01G011260	Melon (DHL92) v3.5.1	mewcgB137
ClCG01G011260	Melon (DHL92) v3.5.1	mewcgB143
ClCG01G011260	Melon (DHL92) v3.5.1	mewcgB517
ClCG01G011260	Watermelon (97103) v1	wcgwmB155
ClCG01G011260	Watermelon (97103) v1	wcgwmB161
ClCG01G011260	Cucurbita pepo (Zucchini)	cpewcgB064
ClCG01G011260	Cucurbita pepo (Zucchini)	cpewcgB065
ClCG01G011260	Cucurbita pepo (Zucchini)	cpewcgB456
ClCG01G011260	Bottle gourd (USVL1VR-Ls)	lsiwcgB125
ClCG01G011260	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G011260	Cucumber (Gy14) v2	cgybwcgB019
ClCG01G011260	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G011260	Melon (DHL92) v3.6.1	medwcgB126
ClCG01G011260	Melon (DHL92) v3.6.1	medwcgB135
ClCG01G011260	Melon (DHL92) v3.6.1	medwcgB512
ClCG01G011260	Silver-seed gourd	carwcgB0052
ClCG01G011260	Silver-seed gourd	carwcgB0485
ClCG01G011260	Cucumber (Chinese Long) v3	cucwcgB021
ClCG01G011260	Cucumber (Chinese Long) v3	cucwcgB024