ClCG01G010210 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G010210
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	U4/U6.U5 tri-snRNP-associated protein
Location	CG_Chr01 : 15327224 .. 15328547 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAAAGGGCCATCGTTACAAATTTCCTCCTCATCTTCTTCTTTCTTCTTCGCGTGAAAAAACCCGCCCGCTCCGTCCCTCCATTTCTCTCTCGCACGTTCATCGCACAGCCGCTGCACGCCTCCGTCGGCGTCACCAGCCACGCCGCGCCGCCGCTCGTCACCGCAAGTCGCCGGTGAGTTTCCCGTCAACTCTCTCTCTCTAAAAGATCCCTCTCTTAAGTGTTCACCGCCCTCCGCTCATTGTCGTCGCCGTCGATCAGGTAGCGCCTCCGCTTGCTAGTCATCAATACACCACTGCCACGGATGTACGGTTGCCGGAATCGTAGTCCAGCAATCAGTTGGTATGAATTCCTGGTATTTGTGGGTTTTTTTAAATTGATTTTGGTTAATTGCTAAGGTTTTGGGTCTAAATTCGAGGGTCGGAAGTGTTTGGGGTCGCTGCCCAACAAGGATATTGGGCTGAAGTCATATATATTCACCTCATTTATAAAAAAAAAGTTGATAGAATGGGATCGAAGAGGCGGAACAATAGTCTTCTAGATGAGAAAGAGTTGGGTCCAGACTTAAAGAGGCATAAATTACTTGGGGAGGTGTCACCTTCTTCTTCTCCACCTGCCTCAGAGAACCCTCGGCTTCCTGGTTTTAACTATGGCGATGATGATGAAGAAGAAGATTACAAATTTAAACAAAATGGAAGTAGATATGATGGAGATGAAGGGGATGGCAATGATGACGAAGAAGATGATGAAGACCATGACGATGATGCAAATCATGTTAAGCGAAGTCGTGATGTTGAAGTTCGAAAAGATTGTCCTTATCTTGATACTGTAAACCGTCAGGTGCATGGCTTGTTTCTTATTTGTATTTTCATTCTGCATTTCTGCATCTTAAAGGTTATGCCCATTTGTTATTGCAATGAGTTTGTTACCTTCCGCTAACTATTTAGTAAGTTTTCTTTACTGATTGTTAATTTATATCTGTTCATACCTTGTAGGTTTTAGATTTTGATTTTGAGAAGTTTTGCTCTGTCTCTCTGTCAAATCTAAATGTTTATGCCTGCCTGGTATGTGGTAAATACTATCAAGGGAGGGGGAAGAAGTCTCATGCTTACACTCACAGTCTTGAAGCCGGACACCATGTGTATATCAACCTCCGGACAGAGAAAGTTTACTGCCTTCCCGATGGATATGAGATTAATGACCCCTCGTTAGATGATATTCGATATGTCCTGAATCCAAGGTTTGCTTATACTTTATCATTATTTGGTTTGCACATTATTACAGCATGGCACAATACTGTTACATCTGCACGATGTTGA

mRNA sequence

ATGAAAAAAAGGGCCATCGTTACAAATTTCCTCCTCATCTTCTTCTTTCTTCTTCGCGTGAAAAAACCCGCCCGCTCCGTCCCTCCATTTCTCTCTCGCACGTTCATCGCACAGCCGCTGCACGCCTCCGTCGGCGTCACCAGCCACGCCGCGCCGCCGCTCGTCACCGCAAGTCGCCGAATGGGATCGAAGAGGCGGAACAATAGTCTTCTAGATGAGAAAGAGTTGGGTCCAGACTTAAAGAGGCATAAATTACTTGGGGAGGTGTCACCTTCTTCTTCTCCACCTGCCTCAGAGAACCCTCGGCTTCCTGGTTTTAACTATGGCGATGATGATGAAGAAGAAGATTACAAATTTAAACAAAATGGAAGTAGATATGATGGAGATGAAGGGGATGGCAATGATGACGAAGAAGATGATGAAGACCATGACGATGATGCAAATCATGTTAAGCGAAGTCGTGATGTTGAAGTTCGAAAAGATTGTCCTTATCTTGATACTGTAAACCGTCAGGTTTTAGATTTTGATTTTGAGAAGTTTTGCTCTGTCTCTCTGTCAAATCTAAATGTTTATGCCTGCCTGGTATGTGGTAAATACTATCAAGGGAGGGGGAAGAAGTCTCATGCTTACACTCACAGTCTTGAAGCCGGACACCATGTGTATATCAACCTCCGGACAGAGAAAGTTTACTGCCTTCCCGATGGATATGAGATTAATGACCCCTCGTTAGATGATATTCGATATGTCCTGAATCCAAGGTTTGCTTATACTTTATCATTATTTGGTTTGCACATTATTACAGCATGGCACAATACTGTTACATCTGCACGATGTTGA

Coding sequence (CDS)

ATGAAAAAAAGGGCCATCGTTACAAATTTCCTCCTCATCTTCTTCTTTCTTCTTCGCGTGAAAAAACCCGCCCGCTCCGTCCCTCCATTTCTCTCTCGCACGTTCATCGCACAGCCGCTGCACGCCTCCGTCGGCGTCACCAGCCACGCCGCGCCGCCGCTCGTCACCGCAAGTCGCCGAATGGGATCGAAGAGGCGGAACAATAGTCTTCTAGATGAGAAAGAGTTGGGTCCAGACTTAAAGAGGCATAAATTACTTGGGGAGGTGTCACCTTCTTCTTCTCCACCTGCCTCAGAGAACCCTCGGCTTCCTGGTTTTAACTATGGCGATGATGATGAAGAAGAAGATTACAAATTTAAACAAAATGGAAGTAGATATGATGGAGATGAAGGGGATGGCAATGATGACGAAGAAGATGATGAAGACCATGACGATGATGCAAATCATGTTAAGCGAAGTCGTGATGTTGAAGTTCGAAAAGATTGTCCTTATCTTGATACTGTAAACCGTCAGGTTTTAGATTTTGATTTTGAGAAGTTTTGCTCTGTCTCTCTGTCAAATCTAAATGTTTATGCCTGCCTGGTATGTGGTAAATACTATCAAGGGAGGGGGAAGAAGTCTCATGCTTACACTCACAGTCTTGAAGCCGGACACCATGTGTATATCAACCTCCGGACAGAGAAAGTTTACTGCCTTCCCGATGGATATGAGATTAATGACCCCTCGTTAGATGATATTCGATATGTCCTGAATCCAAGGTTTGCTTATACTTTATCATTATTTGGTTTGCACATTATTACAGCATGGCACAATACTGTTACATCTGCACGATGTTGA

Protein sequence

MKKRAIVTNFLLIFFFLLRVKKPARSVPPFLSRTFIAQPLHASVGVTSHAAPPLVTASRRMGSKRRNNSLLDEKELGPDLKRHKLLGEVSPSSSPPASENPRLPGFNYGDDDEEEDYKFKQNGSRYDGDEGDGNDDEEDDEDHDDDANHVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRYVLNPRFAYTLSLFGLHIITAWHNTVTSARC

Homology

[Close]

BLAST of ClCG01G010210 vs. Swiss-Prot
Match: SNUT2_HUMAN (U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 2.7e-37
Identity = 70/119 (58.82%), Postives = 86/119 (72.27%), Query Frame = 1


Query: 136 DEEDDEDHDDDANHVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLV 195
           DE+ + + +  A + +   +    + CPYLDT+NR VLDFDFEK CS+SLS++N YACLV
Sbjct: 79  DEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLV 138

Query: 196 CGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRYVLNPRF 255
           CGKY+QGRG KSHAY HS++  HHV++NL T K YCLPD YEI D SL+DI YVL P F
Sbjct: 139 CGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTF 197

[Close]

BLAST of ClCG01G010210 vs. Swiss-Prot
Match: SNUT2_MOUSE (U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=1 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 2.7e-37
Identity = 70/119 (58.82%), Postives = 86/119 (72.27%), Query Frame = 1


Query: 136 DEEDDEDHDDDANHVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLV 195
           DE+ + + +  A + +   +    + CPYLDT+NR VLDFDFEK CS+SLS++N YACLV
Sbjct: 78  DEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLV 137

Query: 196 CGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRYVLNPRF 255
           CGKY+QGRG KSHAY HS++  HHV++NL T K YCLPD YEI D SL+DI YVL P F
Sbjct: 138 CGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTF 196

[Close]

BLAST of ClCG01G010210 vs. Swiss-Prot
Match: SNUT2_PONAB (U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.3e-36
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = 1


Query: 136 DEEDDEDHDDDANHVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLV 195
           DE+ + + +  A + +   +    + CPYLDT+NR VLDFDFEK CS+S S++N YACLV
Sbjct: 79  DEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDFEKLCSISPSHVNAYACLV 138

Query: 196 CGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRYVLNPRF 255
           CGKY+QGRG KSHAY HS++  HHV++NL T K YCLPD YEI D SL+DI YVL P F
Sbjct: 139 CGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTF 197

[Close]

BLAST of ClCG01G010210 vs. Swiss-Prot
Match: UBP10_SCHPO (Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp10 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.2e-30
Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = 1


Query: 138 EDDED-HDDDANHVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVC 197
           +D ED HD  +  ++      +     YLDT+NR++LDFDFEK CSVSL+NL+VYACLVC
Sbjct: 33  KDMEDVHDIASKEMEEHETTPIISQNLYLDTINRKLLDFDFEKVCSVSLTNLSVYACLVC 92

Query: 198 GKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRYVLNPRF 255
           G+Y+QGRG  SHAY H+L   HHV++N  T K Y LP+ Y++   +L DI YV+ P F
Sbjct: 93  GRYFQGRGPSSHAYFHALTENHHVFVNCSTLKFYVLPESYQVESSALQDIAYVMRPTF 150

[Close]

BLAST of ClCG01G010210 vs. Swiss-Prot
Match: SAD1_YEAST (Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAD1 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.3e-19
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1


Query: 164 YLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYIN 223
           YL+TV R+ LDFD EK C ++LS LNVY CLVCG YYQGR +KS A+ HS++  HHV++N
Sbjct: 31  YLETVVREKLDFDSEKICCITLSPLNVYCCLVCGHYYQGRHEKSPAFIHSIDENHHVFLN 90

Query: 224 LRTEKVYCLPDGYEI 239
           L + K Y LP   +I
Sbjct: 91  LTSLKFYMLPQNVQI 105

[Close]

BLAST of ClCG01G010210 vs. TrEMBL
Match: A0A0A0LTF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G185102 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 7.3e-106
Identity = 183/195 (93.85%), Postives = 192/195 (98.46%), Query Frame = 1


Query: 61  MGSKRRNNSLLDEKELGPDLKRHKLLGEVSPSSSPPASENPRLPGFNYGDDDEEEDYKFK 120
           MGSKRR+NSLLDE+ELGPDLKRHKLLGEVSPSSSPPASENP+LPGFNYGDDDEEED+KFK
Sbjct: 1   MGSKRRSNSLLDEEELGPDLKRHKLLGEVSPSSSPPASENPQLPGFNYGDDDEEEDFKFK 60

Query: 121 QNGSRYDGDEGDGNDDEEDDEDHDDDANHVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKF 180
           QNGS+YDGDEGD NDDEEDDE++D++ N VKRSRDVEVRKDCPYLDTVNRQVLDFDFEKF
Sbjct: 61  QNGSKYDGDEGDYNDDEEDDEEYDNNGNQVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKF 120

Query: 181 CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIND 240
           CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIND
Sbjct: 121 CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIND 180

Query: 241 PSLDDIRYVLNPRFA 256
           PSLDDIRYVLNPRFA
Sbjct: 181 PSLDDIRYVLNPRFA 195

[Close]

BLAST of ClCG01G010210 vs. TrEMBL
Match: A5BFT1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019937 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.7e-68
Identity = 139/209 (66.51%), Postives = 154/209 (73.68%), Query Frame = 1


Query: 61  MGSKRRNNSLLDEKELGPDLKRHKLLGEVSPSSSPPASENPRLPGFNYGDDDEE------ 120
           M +KR +NS  DE    PDLKR K L E SP  +  A EN      +Y DDD+E      
Sbjct: 1   MKTKREDNSDEDEGREFPDLKRQKKLDESSPPPASLAFENALHTLASYDDDDDEKEEEEM 60

Query: 121 ---------EDYKFKQNGSRYDGDEGDGNDDEEDDEDHDDDANHVKRSRDVEVRKDCPYL 180
                    ED +  +     DG+E D  DD++DD+D   +AN VKRSR VEVR+DCPYL
Sbjct: 61  KEASGLRGREDNRRAERNGHRDGEEYD--DDDDDDDDPHQEANQVKRSRLVEVRRDCPYL 120

Query: 181 DTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLR 240
           DTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRG+KSHAYTHSLEAGHHVYINLR
Sbjct: 121 DTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLR 180

Query: 241 TEKVYCLPDGYEINDPSLDDIRYVLNPRF 255
           TEKVYCLPDGYEINDPSLDDIR+VLNPRF
Sbjct: 181 TEKVYCLPDGYEINDPSLDDIRHVLNPRF 207

[Close]

BLAST of ClCG01G010210 vs. TrEMBL
Match: M5WMX7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003586mg PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.5e-68
Identity = 134/191 (70.16%), Postives = 148/191 (77.49%), Query Frame = 1


Query: 79  DLKRHKLLGEVSPSSSPP--ASENPRLPGFNYGDDDEEEDYKFKQNGSRYDGDEGDGND- 138
           D KR K  G  SPSSSPP  ASE   LPGFNYGD+D+E++    Q     DG  GDG D 
Sbjct: 21  DPKRQKRNGHSSPSSSPPPPASEGSLLPGFNYGDEDDEDN----QRRPPVDGYRGDGGDN 80

Query: 139 ------------DEEDDEDHDDDANHVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKFCSV 198
                       +EEDD+D D +    +RSR++EVR+DCPYLD VNRQVLDFDFEKFCS+
Sbjct: 81  QRDIKSGVEVEEEEEDDDDDDLEQGLYRRSREIEVRRDCPYLDAVNRQVLDFDFEKFCSL 140

Query: 199 SLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSL 255
           SLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI+DPSL
Sbjct: 141 SLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEISDPSL 200

[Close]

BLAST of ClCG01G010210 vs. TrEMBL
Match: V4RJZ4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004667mg PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.5e-66
Identity = 139/200 (69.50%), Postives = 152/200 (76.00%), Query Frame = 1


Query: 61  MGSKRRNNSLLDEKELGPDLKRHKLLGEVSPSSSPPASENPRLPGFN-YGDDDEEEDYKF 120
           M  KR+NN   DE      +K  K++ + SPS      ENP LP  N Y DDDEEE+Y  
Sbjct: 1   MTKKRKNNGSADEDR---HVKSVKVVEQSSPSPPRLGFENPLLPLANTYDDDDEEEEYGG 60

Query: 121 KQNGSRYDGDEG-DGNDDEED-DEDHDDDANHV---KRSRDVEVRKDCPYLDTVNRQVLD 180
           + +     G  G  G DD+ED DED DD AN     +RSR VEVR+DCPYLDTVNRQVLD
Sbjct: 61  RGDSGAKVGQNGRTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLD 120

Query: 181 FDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPD 240
           FDFEKFCSVSLSNLNVYACLVCGKYYQGRG+KSHAYTHSLEAGHHVYINLRTEKVYCLPD
Sbjct: 121 FDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPD 180

Query: 241 GYEINDPSLDDIRYVLNPRF 255
           GYEINDPSLDDIR+VLNPRF
Sbjct: 181 GYEINDPSLDDIRHVLNPRF 197

[Close]

BLAST of ClCG01G010210 vs. TrEMBL
Match: W9QM53_9ROSA (U4/U6.U5 tri-snRNP-associated protein 2 OS=Morus notabilis GN=L484_013646 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 4.3e-66
Identity = 129/200 (64.50%), Postives = 153/200 (76.50%), Query Frame = 1


Query: 75  ELGPDLKRHKLLGEVSPSSSPPASENPRLPGFNYGDDDEEEDYKFK-------------- 134
           +L  + KR K++      S PPAS+N  LPGFNYGDDDEE++ + +              
Sbjct: 19  DLNSERKRQKMI------SPPPASDNSLLPGFNYGDDDEEDESERQLRSDGHGDGMLRTG 78

Query: 135 QNGSRYDGDEGDGNDDEEDDEDHDDDANHVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKF 194
           QNG + + +E    D++EDD   D+  +  KRSR++E+R+DCPYLDTVNRQVLDFDFEKF
Sbjct: 79  QNGVQIEAEE----DEDEDDYLRDEGFSLGKRSREIEIRRDCPYLDTVNRQVLDFDFEKF 138

Query: 195 CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIND 254
           CSVSLSNLNVYACLVCGKYYQGRG+KSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI+D
Sbjct: 139 CSVSLSNLNVYACLVCGKYYQGRGRKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEISD 198

Query: 255 PSLDDIRYVLNPRFAYTLSL 261
           PSLDDIR+VLNPRF   + L
Sbjct: 199 PSLDDIRHVLNPRFTEEVQL 208

[Close]

BLAST of ClCG01G010210 vs. TAIR10
Match: AT4G22285.1 (AT4G22285.1 Ubiquitin C-terminal hydrolases superfamily protein)

HSP 1 Score: 241.1 bits (614), Expect = 8.0e-64
Identity = 130/206 (63.11%), Postives = 152/206 (73.79%), Query Frame = 1


Query: 62  GSKRRNNSLLDEKELGPDLKRHKLLGEVSPSSSPPAS-ENPRLPGFN-YGDDDEEEDYKF 121
           G +   N + +E+    ++KR +++ E S S  PP    NP LP  N Y DDDEEE+ + 
Sbjct: 3   GEREVKNGVSEEER---EVKRKRVM-ERSDSPPPPLGFNNPLLPLANTYDDDDEEEENEQ 62

Query: 122 KQNGSRYDG---DEGDGND-----DEEDDEDHDDDANHVK--RSRDVEVRKDCPYLDTVN 181
           K++ +R +G    EG+GN       EE D+D DDD +  K   SR VEVR+DCPYLDTVN
Sbjct: 63  KKSQARGNGVAKGEGNGNKVKGEAQEEVDDDEDDDVSKGKGKHSRHVEVRRDCPYLDTVN 122

Query: 182 RQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKV 241
           RQVLDFDFE+FCSVSLSNLNVYACLVCGKY+QGR +KSHAYTHSLEAGHHVYINL TEKV
Sbjct: 123 RQVLDFDFERFCSVSLSNLNVYACLVCGKYFQGRSQKSHAYTHSLEAGHHVYINLLTEKV 182

Query: 242 YCLPDGYEINDPSLDDIRYVLNPRFA 256
           YCLPD YEINDPSLDDIR+VLNPRF+
Sbjct: 183 YCLPDSYEINDPSLDDIRHVLNPRFS 204

[Close]

BLAST of ClCG01G010210 vs. TAIR10
Match: AT4G22350.2 (AT4G22350.2 Ubiquitin C-terminal hydrolases superfamily protein)

HSP 1 Score: 236.1 bits (601), Expect = 2.6e-62
Identity = 125/204 (61.27%), Postives = 145/204 (71.08%), Query Frame = 1


Query: 62  GSKRRNNSLLDEKELGPDLKRHKLLGEVSPSSSPPAS-ENPRLPGFNYGDDDEEEDYKFK 121
           G +   N + +E+    ++KR +++ E S S  PP    NP LP  N  DDD  +  K +
Sbjct: 3   GEREVKNGVSEEER---EVKRKRVM-ERSDSPPPPLGFNNPLLPFANAYDDDNNQQNKSQ 62

Query: 122 QNGSRYDGDEGDGND-------DEEDDEDHDDDAN--HVKRSRDVEVRKDCPYLDTVNRQ 181
              +     EG+GN        + +DDED DDDA+    K SR VEVR+DCPYLDTVNRQ
Sbjct: 63  TRCNVVAKGEGNGNKVKGEAQVEVDDDEDDDDDASKGRGKHSRHVEVRRDCPYLDTVNRQ 122

Query: 182 VLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYC 241
           VLDFDFE+FCSVSLSNLNVYACLVCGKY+QGR +KSHAYTHSLEAGHHVYINL TEKVYC
Sbjct: 123 VLDFDFERFCSVSLSNLNVYACLVCGKYFQGRSQKSHAYTHSLEAGHHVYINLLTEKVYC 182

Query: 242 LPDGYEINDPSLDDIRYVLNPRFA 256
           LPD YEINDPSLDDIR+VLNPRF+
Sbjct: 183 LPDSYEINDPSLDDIRHVLNPRFS 202

[Close]

BLAST of ClCG01G010210 vs. TAIR10
Match: AT4G22410.1 (AT4G22410.1 Ubiquitin C-terminal hydrolases superfamily protein)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-41
Identity = 77/88 (87.50%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 168 VNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTE 227
           V  QVLDF FE+FCSVSLSNLNVYACLVCGKY+QGR +KSHAYTHSLEAGHHVYINL TE
Sbjct: 2   VEFQVLDFHFERFCSVSLSNLNVYACLVCGKYFQGRSQKSHAYTHSLEAGHHVYINLLTE 61

Query: 228 KVYCLPDGYEINDPSLDDIRYVLNPRFA 256
           KVYCLPD YEINDPSLDDIR+VLNPRF+
Sbjct: 62  KVYCLPDSYEINDPSLDDIRHVLNPRFS 89

[Close]

BLAST of ClCG01G010210 vs. NCBI nr
Match: gi|659127290|ref|XP_008463627.1| (PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Cucumis melo])

HSP 1 Score: 394.8 bits (1013), Expect = 1.2e-106
Identity = 185/195 (94.87%), Postives = 190/195 (97.44%), Query Frame = 1


Query: 61  MGSKRRNNSLLDEKELGPDLKRHKLLGEVSPSSSPPASENPRLPGFNYGDDDEEEDYKFK 120
           MGSKRRNNSLLDE+ELGPDLKRHKLLGEVSPSSSPPASENP+LPGFNYGDDDEEED+KFK
Sbjct: 1   MGSKRRNNSLLDEEELGPDLKRHKLLGEVSPSSSPPASENPQLPGFNYGDDDEEEDFKFK 60

Query: 121 QNGSRYDGDEGDGNDDEEDDEDHDDDANHVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKF 180
           QNGS+YD DEGD NDDEEDDE+HDD  N VKRSRDVEVRKDCPYLDTVNRQVLDFDFEKF
Sbjct: 61  QNGSKYDADEGDYNDDEEDDEEHDDHGNQVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKF 120

Query: 181 CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIND 240
           CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIND
Sbjct: 121 CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIND 180

Query: 241 PSLDDIRYVLNPRFA 256
           PSLDDIRYVLNPRFA
Sbjct: 181 PSLDDIRYVLNPRFA 195

[Close]

BLAST of ClCG01G010210 vs. NCBI nr
Match: gi|778659784|ref|XP_011655023.1| (PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2 [Cucumis sativus])

HSP 1 Score: 391.7 bits (1005), Expect = 1.0e-105
Identity = 183/195 (93.85%), Postives = 192/195 (98.46%), Query Frame = 1


Query: 61  MGSKRRNNSLLDEKELGPDLKRHKLLGEVSPSSSPPASENPRLPGFNYGDDDEEEDYKFK 120
           MGSKRR+NSLLDE+ELGPDLKRHKLLGEVSPSSSPPASENP+LPGFNYGDDDEEED+KFK
Sbjct: 1   MGSKRRSNSLLDEEELGPDLKRHKLLGEVSPSSSPPASENPQLPGFNYGDDDEEEDFKFK 60

Query: 121 QNGSRYDGDEGDGNDDEEDDEDHDDDANHVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKF 180
           QNGS+YDGDEGD NDDEEDDE++D++ N VKRSRDVEVRKDCPYLDTVNRQVLDFDFEKF
Sbjct: 61  QNGSKYDGDEGDYNDDEEDDEEYDNNGNQVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKF 120

Query: 181 CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIND 240
           CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIND
Sbjct: 121 CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIND 180

Query: 241 PSLDDIRYVLNPRFA 256
           PSLDDIRYVLNPRFA
Sbjct: 181 PSLDDIRYVLNPRFA 195

[Close]

BLAST of ClCG01G010210 vs. NCBI nr
Match: gi|147862940|emb|CAN83206.1| (hypothetical protein VITISV_019937 [Vitis vinifera])

HSP 1 Score: 266.9 bits (681), Expect = 3.9e-68
Identity = 139/209 (66.51%), Postives = 154/209 (73.68%), Query Frame = 1


Query: 61  MGSKRRNNSLLDEKELGPDLKRHKLLGEVSPSSSPPASENPRLPGFNYGDDDEE------ 120
           M +KR +NS  DE    PDLKR K L E SP  +  A EN      +Y DDD+E      
Sbjct: 1   MKTKREDNSDEDEGREFPDLKRQKKLDESSPPPASLAFENALHTLASYDDDDDEKEEEEM 60

Query: 121 ---------EDYKFKQNGSRYDGDEGDGNDDEEDDEDHDDDANHVKRSRDVEVRKDCPYL 180
                    ED +  +     DG+E D  DD++DD+D   +AN VKRSR VEVR+DCPYL
Sbjct: 61  KEASGLRGREDNRRAERNGHRDGEEYD--DDDDDDDDPHQEANQVKRSRLVEVRRDCPYL 120

Query: 181 DTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLR 240
           DTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRG+KSHAYTHSLEAGHHVYINLR
Sbjct: 121 DTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLR 180

Query: 241 TEKVYCLPDGYEINDPSLDDIRYVLNPRF 255
           TEKVYCLPDGYEINDPSLDDIR+VLNPRF
Sbjct: 181 TEKVYCLPDGYEINDPSLDDIRHVLNPRF 207

[Close]

BLAST of ClCG01G010210 vs. NCBI nr
Match: gi|595903564|ref|XP_007213948.1| (hypothetical protein PRUPE_ppa003586mg [Prunus persica])

HSP 1 Score: 266.5 bits (680), Expect = 5.1e-68
Identity = 134/191 (70.16%), Postives = 148/191 (77.49%), Query Frame = 1


Query: 79  DLKRHKLLGEVSPSSSPP--ASENPRLPGFNYGDDDEEEDYKFKQNGSRYDGDEGDGND- 138
           D KR K  G  SPSSSPP  ASE   LPGFNYGD+D+E++    Q     DG  GDG D 
Sbjct: 21  DPKRQKRNGHSSPSSSPPPPASEGSLLPGFNYGDEDDEDN----QRRPPVDGYRGDGGDN 80

Query: 139 ------------DEEDDEDHDDDANHVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKFCSV 198
                       +EEDD+D D +    +RSR++EVR+DCPYLD VNRQVLDFDFEKFCS+
Sbjct: 81  QRDIKSGVEVEEEEEDDDDDDLEQGLYRRSREIEVRRDCPYLDAVNRQVLDFDFEKFCSL 140

Query: 199 SLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSL 255
           SLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI+DPSL
Sbjct: 141 SLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEISDPSL 200

[Close]

BLAST of ClCG01G010210 vs. NCBI nr
Match: gi|1009107233|ref|XP_015878603.1| (PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Ziziphus jujuba])

HSP 1 Score: 264.2 bits (674), Expect = 2.5e-67
Identity = 135/194 (69.59%), Postives = 149/194 (76.80%), Query Frame = 1


Query: 76  LGPDLKRHKLLGEVS----PSSSPPASENPRLPGFNYGDDDEEEDYKF--KQNGSRYDGD 135
           L  D KR ++  + S     S SPPASE+  LPGFNYGD+DEEED K     NG+R DG 
Sbjct: 20  LDSDSKRQRVASQSSLSHSASPSPPASESTLLPGFNYGDEDEEEDNKRLPPANGTREDGG 79

Query: 136 E----GDGNDDEEDDEDHDD-----DANHVKRSRDVEVRKDCPYLDTVNRQVLDFDFEKF 195
           +    G     EE+DED DD           R R++E+R+DCPYLDTVNRQVLDFDFEKF
Sbjct: 80  DKPRTGQNGVQEEEDEDDDDFLREQGLGQGGRRREIEIRRDCPYLDTVNRQVLDFDFEKF 139

Query: 196 CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIND 255
           CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI+D
Sbjct: 140 CSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEISD 199

The following BLAST results are available for this feature:

BLAST of ClCG01G010210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SNUT2_HUMAN	2.7e-37	58.82	U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2	[more]
SNUT2_MOUSE	2.7e-37	58.82	U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=1 SV=2	[more]
SNUT2_PONAB	2.3e-36	57.98	U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1	[more]
UBP10_SCHPO	3.2e-30	51.69	Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe (strain 972 / ...	[more]
SAD1_YEAST	4.3e-19	57.33	Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	[more]

BLAST of ClCG01G010210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTF9_CUCSA	7.3e-106	93.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G185102 PE=4 SV=1	[more]
A5BFT1_VITVI	2.7e-68	66.51	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019937 PE=4 SV=1	[more]
M5WMX7_PRUPE	3.5e-68	70.16	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003586mg PE=4 SV=1	[more]
V4RJZ4_9ROSI	2.5e-66	69.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004667mg PE=4 SV=1	[more]
W9QM53_9ROSA	4.3e-66	64.50	U4/U6.U5 tri-snRNP-associated protein 2 OS=Morus notabilis GN=L484_013646 PE=4 S...	[more]

BLAST of ClCG01G010210 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G22285.1	8.0e-64	63.11	Ubiquitin C-terminal hydrolases superfamily protein	[more]
AT4G22350.2	2.6e-62	61.27	Ubiquitin C-terminal hydrolases superfamily protein	[more]
AT4G22410.1	1.5e-41	87.50	Ubiquitin C-terminal hydrolases superfamily protein	[more]

BLAST of ClCG01G010210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127290\|ref\|XP_008463627.1\|	1.2e-106	94.87	PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Cucumis melo]	[more]
gi\|778659784\|ref\|XP_011655023.1\|	1.0e-105	93.85	PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2 [Cucumis sativus]	[more]
gi\|147862940\|emb\|CAN83206.1\|	3.9e-68	66.51	hypothetical protein VITISV_019937 [Vitis vinifera]	[more]
gi\|595903564\|ref\|XP_007213948.1\|	5.1e-68	70.16	hypothetical protein PRUPE_ppa003586mg [Prunus persica]	[more]
gi\|1009107233\|ref\|XP_015878603.1\|	2.5e-67	69.59	PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001607	Znf_UBP
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0016579	protein deubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0008233	peptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G010210.1	ClCG01G010210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001607	Zinc finger, UBP-type	PFAM	PF02148	zf-UBP	coord: 181..242 score: 1.4
IPR001607	Zinc finger, UBP-type	SMART	SM00290	Zf_UBP_1	coord: 180..229 score: 1.6
IPR001607	Zinc finger, UBP-type	PROFILE	PS50271	ZF_UBP	coord: 179..240 score: 18
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 160..248 score: 7.1
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 160..253 score: 1.18

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G010210	Cla009003	Watermelon (97103) v1	wcgwmB146
ClCG01G010210	Cla97C01G010200	Watermelon (97103) v2	wcgwmbB089
ClCG01G010210	Bhi08G000639	Wax gourd	wcgwgoB238
ClCG01G010210	CmoCh13G004240	Cucurbita moschata (Rifu)	cmowcgB177
ClCG01G010210	Lsi02G011050	Bottle gourd (USVL1VR-Ls)	lsiwcgB169

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G010210	Cucumber (Chinese Long) v3	cucwcgB024
ClCG01G010210	Wax gourd	wcgwgoB233
ClCG01G010210	Cucurbita maxima (Rimu)	cmawcgB186
ClCG01G010210	Cucurbita maxima (Rimu)	cmawcgB342
ClCG01G010210	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G010210	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G010210	Melon (DHL92) v3.5.1	mewcgB140
ClCG01G010210	Cucurbita pepo (Zucchini)	cpewcgB030
ClCG01G010210	Cucurbita pepo (Zucchini)	cpewcgB451
ClCG01G010210	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G010210	Melon (DHL92) v3.6.1	medwcgB132
ClCG01G010210	Silver-seed gourd	carwcgB1012