ClCG01G010190 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G010190
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 15279173 .. 15279955 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGATTGGGAAGCTGAGTTGGTTATTATAGTTTGTAGGATTACCATTCTTAACTATTTTAATCTAGGTTATAATAGTTTGTAATTGGGTTGCATGTTATTTTAGTCCGTATTTAGGTTTTTTCTATTGTTTTTTTATTACACAAGTAATAGTGTGCCTTAAATATTATATTTTCTAAATATATAAATAAAAACATTCCACTTCTTTGAAAGCACGGTTCTTGCCTCCCTCCTTGGAGCTCGTCCATTCCTTGGGTGATCCCTTGCTCTCACGTTCGAGTATTTGCTCGTCGTTTAGGCCAGTAAGTGAGATTTCTGCTCATTGCAGTCACTCCCGGGGTTCTTCGCACCTGGATAGTACCAGGACCTTTGTGCCTCGATCCGCTTACAGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAAAGAGCTGTAAGCCCAATGGGGGGTGACAGAGGACGTGCTCGTACGGTTCAAAGAAGGGTATGATCAACTCGTTGATTGTTAGGAACTTTCACTCTTCTATATTCGAAATATGCCTTTCTAGGAGCATTACAATCTACAGCTCAAATGGTCCCTTATGAAGTCTCTATTGGTCTTATTCTTATTGTGCACCTTGTGAGCGCATTTGGATTCGCGAAGGCAATCGCTTGGATGTTCTCCTAACCCAACCCGGGAATGGATTGGAGGGATTCGCAGCATGGGGAATGTCCACATCTCGTCACAAGGCTCATTTTGAGTTGTGGGTCATAGGGGGGTTTATCTGA

mRNA sequence

ATGGTTGATTGGGAAGCTGAGTTGCACGGTTCTTGCCTCCCTCCTTGGAGCTCGTCCATTCCTTGGGTGATCCCTTGCTCTCACGTTCGAGTATTTGCTCGTCGTTTAGGCCATCACTCCCGGGGTTCTTCGCACCTGGATAGTACCAGGACCTTTGTGCCTCGATCCGCTTACAGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGTCTCTATTGGTCTTATTCTTATTGTGCACCTTGTGAGCGCATTTGGATTCGCGAAGGCAATCGCTTGGATGTTCTCCTAACCCAACCCGGGAATGGATTGGAGGGATTCGCAGCATGGGGAATGTCCACATCTCGTCACAAGGCTCATTTTGAGTTGTGGGTCATAGGGGGGTTTATCTGA

Coding sequence (CDS)

ATGGTTGATTGGGAAGCTGAGTTGCACGGTTCTTGCCTCCCTCCTTGGAGCTCGTCCATTCCTTGGGTGATCCCTTGCTCTCACGTTCGAGTATTTGCTCGTCGTTTAGGCCATCACTCCCGGGGTTCTTCGCACCTGGATAGTACCAGGACCTTTGTGCCTCGATCCGCTTACAGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGTCTCTATTGGTCTTATTCTTATTGTGCACCTTGTGAGCGCATTTGGATTCGCGAAGGCAATCGCTTGGATGTTCTCCTAACCCAACCCGGGAATGGATTGGAGGGATTCGCAGCATGGGGAATGTCCACATCTCGTCACAAGGCTCATTTTGAGTTGTGGGTCATAGGGGGGTTTATCTGA

Protein sequence

MVDWEAELHGSCLPPWSSSIPWVIPCSHVRVFARRLGHHSRGSSHLDSTRTFVPRSAYRGIEREELEPELVGLGLYWSYSYCAPCERIWIREGNRLDVLLTQPGNGLEGFAAWGMSTSRHKAHFELWVIGGFI
Homology
[Close]
BLAST of ClCG01G010190 vs. TrEMBL
Match: A0A101M2R3_PICGL (Uncharacterized protein OS=Picea glauca GN=ABT39_MTgene3054 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.5e-13
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 75  LYWSYSYCAPCERIWIREGNRLDVLLTQPGNGLEGFAAWGMSTSRHKAHFEL 127
           +YWSY YCAP ER+WIR G R DV LT+PGNG EG AAW MS SR KA+FEL
Sbjct: 35  IYWSYYYCAPRERVWIRYGTRSDVTLTRPGNGPEGTAAWVMSASRRKANFEL 86

[Close]
BLAST of ClCG01G010190 vs. TrEMBL
Match: A0A103XE97_CYNCS (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H OS=Cynara cardunculus var. scolymus GN=Ccrd_008921 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.0e-10
Identity = 46/94 (48.94%), Postives = 49/94 (52.13%), Query Frame = 1 

Query: 55  RSAYRGIEREELEPELVGLG----------------------LYWSY-SYCAPCERIWIR 114
           RSAYRGIER++   E  GLG                      L WS      PC R+WIR
Sbjct: 17  RSAYRGIERKDPGLEQDGLGYRAVSAVGGDKGRARTKHYDLQLKWSLMKSLLPCGRVWIR 76

Query: 115 EGNRLDVLLTQPGNGLEGFAAWGMSTSRHKAHFE 126
           EGNR DV LTQPGNG    A  GMS SR KAHFE
Sbjct: 77  EGNRSDVPLTQPGNGPGRTATLGMSASRPKAHFE 110

[Close]
BLAST of ClCG01G010190 vs. NCBI nr
Match: gi|973606728|gb|KUM49827.1| (hypothetical protein ABT39_MTgene3054 (mitochondrion) [Picea glauca])

HSP 1 Score: 82.4 bits (202), Expect = 6.5e-13
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 75  LYWSYSYCAPCERIWIREGNRLDVLLTQPGNGLEGFAAWGMSTSRHKAHFEL 127
           +YWSY YCAP ER+WIR G R DV LT+PGNG EG AAW MS SR KA+FEL
Sbjct: 35  IYWSYYYCAPRERVWIRYGTRSDVTLTRPGNGPEGTAAWVMSASRRKANFEL 86

[Close]
BLAST of ClCG01G010190 vs. NCBI nr
Match: gi|976900938|gb|KVH89091.1| (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H [Cynara cardunculus var. scolymus])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 46/94 (48.94%), Postives = 49/94 (52.13%), Query Frame = 1 

Query: 55  RSAYRGIEREELEPELVGLG----------------------LYWSY-SYCAPCERIWIR 114
           RSAYRGIER++   E  GLG                      L WS      PC R+WIR
Sbjct: 17  RSAYRGIERKDPGLEQDGLGYRAVSAVGGDKGRARTKHYDLQLKWSLMKSLLPCGRVWIR 76

Query: 115 EGNRLDVLLTQPGNGLEGFAAWGMSTSRHKAHFE 126
           EGNR DV LTQPGNG    A  GMS SR KAHFE
Sbjct: 77  EGNRSDVPLTQPGNGPGRTATLGMSASRPKAHFE 110

The following BLAST results are available for this feature:
BLAST of ClCG01G010190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A101M2R3_PICGL4.5e-1371.15Uncharacterized protein OS=Picea glauca GN=ABT39_MTgene3054 PE=4 SV=1[more]
A0A103XE97_CYNCS8.0e-1048.94NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H OS=Cyn... [more]
BLAST of ClCG01G010190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|973606728|gb|KUM49827.1|6.5e-1371.15hypothetical protein ABT39_MTgene3054 (mitochondrion) [Picea glauca][more]
gi|976900938|gb|KVH89091.1|1.1e-0948.94NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H [Cynar... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G010190.1ClCG01G010190.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G010190Wild cucumber (PI 183967)cpiwcgB025
ClCG01G010190Cucumber (Chinese Long) v2cuwcgB022
ClCG01G010190Melon (DHL92) v3.5.1mewcgB140
ClCG01G010190Watermelon (97103) v1wcgwmB146
ClCG01G010190Cucurbita pepo (Zucchini)cpewcgB030
ClCG01G010190Cucurbita pepo (Zucchini)cpewcgB451
ClCG01G010190Bottle gourd (USVL1VR-Ls)lsiwcgB169
ClCG01G010190Cucumber (Gy14) v2cgybwcgB021
ClCG01G010190Melon (DHL92) v3.6.1medwcgB132
ClCG01G010190Silver-seed gourdcarwcgB1012
ClCG01G010190Cucumber (Chinese Long) v3cucwcgB024
ClCG01G010190Watermelon (97103) v2wcgwmbB089
ClCG01G010190Wax gourdwcgwgoB233
ClCG01G010190Cucurbita maxima (Rimu)cmawcgB186
ClCG01G010190Cucurbita maxima (Rimu)cmawcgB342
ClCG01G010190Cucurbita moschata (Rifu)cmowcgB177