ClCG01G010190 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G010190
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 15279173 .. 15279955 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGATTGGGAAGCTGAGTTGGTTATTATAGTTTGTAGGATTACCATTCTTAACTATTTTAATCTAGGTTATAATAGTTTGTAATTGGGTTGCATGTTATTTTAGTCCGTATTTAGGTTTTTTCTATTGTTTTTTTATTACACAAGTAATAGTGTGCCTTAAATATTATATTTTCTAAATATATAAATAAAAACATTCCACTTCTTTGAAAGCACGGTTCTTGCCTCCCTCCTTGGAGCTCGTCCATTCCTTGGGTGATCCCTTGCTCTCACGTTCGAGTATTTGCTCGTCGTTTAGGCCAGTAAGTGAGATTTCTGCTCATTGCAGTCACTCCCGGGGTTCTTCGCACCTGGATAGTACCAGGACCTTTGTGCCTCGATCCGCTTACAGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAAAGAGCTGTAAGCCCAATGGGGGGTGACAGAGGACGTGCTCGTACGGTTCAAAGAAGGGTATGATCAACTCGTTGATTGTTAGGAACTTTCACTCTTCTATATTCGAAATATGCCTTTCTAGGAGCATTACAATCTACAGCTCAAATGGTCCCTTATGAAGTCTCTATTGGTCTTATTCTTATTGTGCACCTTGTGAGCGCATTTGGATTCGCGAAGGCAATCGCTTGGATGTTCTCCTAACCCAACCCGGGAATGGATTGGAGGGATTCGCAGCATGGGGAATGTCCACATCTCGTCACAAGGCTCATTTTGAGTTGTGGGTCATAGGGGGGTTTATCTGA

mRNA sequence

ATGGTTGATTGGGAAGCTGAGTTGCACGGTTCTTGCCTCCCTCCTTGGAGCTCGTCCATTCCTTGGGTGATCCCTTGCTCTCACGTTCGAGTATTTGCTCGTCGTTTAGGCCATCACTCCCGGGGTTCTTCGCACCTGGATAGTACCAGGACCTTTGTGCCTCGATCCGCTTACAGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGTCTCTATTGGTCTTATTCTTATTGTGCACCTTGTGAGCGCATTTGGATTCGCGAAGGCAATCGCTTGGATGTTCTCCTAACCCAACCCGGGAATGGATTGGAGGGATTCGCAGCATGGGGAATGTCCACATCTCGTCACAAGGCTCATTTTGAGTTGTGGGTCATAGGGGGGTTTATCTGA

Coding sequence (CDS)

ATGGTTGATTGGGAAGCTGAGTTGCACGGTTCTTGCCTCCCTCCTTGGAGCTCGTCCATTCCTTGGGTGATCCCTTGCTCTCACGTTCGAGTATTTGCTCGTCGTTTAGGCCATCACTCCCGGGGTTCTTCGCACCTGGATAGTACCAGGACCTTTGTGCCTCGATCCGCTTACAGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGTCTCTATTGGTCTTATTCTTATTGTGCACCTTGTGAGCGCATTTGGATTCGCGAAGGCAATCGCTTGGATGTTCTCCTAACCCAACCCGGGAATGGATTGGAGGGATTCGCAGCATGGGGAATGTCCACATCTCGTCACAAGGCTCATTTTGAGTTGTGGGTCATAGGGGGGTTTATCTGA

Protein sequence

MVDWEAELHGSCLPPWSSSIPWVIPCSHVRVFARRLGHHSRGSSHLDSTRTFVPRSAYRGIEREELEPELVGLGLYWSYSYCAPCERIWIREGNRLDVLLTQPGNGLEGFAAWGMSTSRHKAHFELWVIGGFI
Homology
[Close]
BLAST of ClCG01G010190 vs. TrEMBL
Match: A0A101M2R3_PICGL (Uncharacterized protein OS=Picea glauca GN=ABT39_MTgene3054 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.5e-13
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 75  LYWSYSYCAPCERIWIREGNRLDVLLTQPGNGLEGFAAWGMSTSRHKAHFEL 127
           +YWSY YCAP ER+WIR G R DV LT+PGNG EG AAW MS SR KA+FEL
Sbjct: 35  IYWSYYYCAPRERVWIRYGTRSDVTLTRPGNGPEGTAAWVMSASRRKANFEL 86

[Close]
BLAST of ClCG01G010190 vs. TrEMBL
Match: A0A103XE97_CYNCS (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H OS=Cynara cardunculus var. scolymus GN=Ccrd_008921 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.0e-10
Identity = 46/94 (48.94%), Postives = 49/94 (52.13%), Query Frame = 1 

Query: 55  RSAYRGIEREELEPELVGLG----------------------LYWSY-SYCAPCERIWIR 114
           RSAYRGIER++   E  GLG                      L WS      PC R+WIR
Sbjct: 17  RSAYRGIERKDPGLEQDGLGYRAVSAVGGDKGRARTKHYDLQLKWSLMKSLLPCGRVWIR 76

Query: 115 EGNRLDVLLTQPGNGLEGFAAWGMSTSRHKAHFE 126
           EGNR DV LTQPGNG    A  GMS SR KAHFE
Sbjct: 77  EGNRSDVPLTQPGNGPGRTATLGMSASRPKAHFE 110

[Close]
BLAST of ClCG01G010190 vs. NCBI nr
Match: gi|973606728|gb|KUM49827.1| (hypothetical protein ABT39_MTgene3054 (mitochondrion) [Picea glauca])

HSP 1 Score: 82.4 bits (202), Expect = 6.5e-13
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 75  LYWSYSYCAPCERIWIREGNRLDVLLTQPGNGLEGFAAWGMSTSRHKAHFEL 127
           +YWSY YCAP ER+WIR G R DV LT+PGNG EG AAW MS SR KA+FEL
Sbjct: 35  IYWSYYYCAPRERVWIRYGTRSDVTLTRPGNGPEGTAAWVMSASRRKANFEL 86

[Close]
BLAST of ClCG01G010190 vs. NCBI nr
Match: gi|976900938|gb|KVH89091.1| (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H [Cynara cardunculus var. scolymus])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 46/94 (48.94%), Postives = 49/94 (52.13%), Query Frame = 1 

Query: 55  RSAYRGIEREELEPELVGLG----------------------LYWSY-SYCAPCERIWIR 114
           RSAYRGIER++   E  GLG                      L WS      PC R+WIR
Sbjct: 17  RSAYRGIERKDPGLEQDGLGYRAVSAVGGDKGRARTKHYDLQLKWSLMKSLLPCGRVWIR 76

Query: 115 EGNRLDVLLTQPGNGLEGFAAWGMSTSRHKAHFE 126
           EGNR DV LTQPGNG    A  GMS SR KAHFE
Sbjct: 77  EGNRSDVPLTQPGNGPGRTATLGMSASRPKAHFE 110

The following BLAST results are available for this feature:
BLAST of ClCG01G010190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A101M2R3_PICGL4.5e-1371.15Uncharacterized protein OS=Picea glauca GN=ABT39_MTgene3054 PE=4 SV=1[more]
A0A103XE97_CYNCS8.0e-1048.94NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H OS=Cyn... [more]
BLAST of ClCG01G010190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|973606728|gb|KUM49827.1|6.5e-1371.15hypothetical protein ABT39_MTgene3054 (mitochondrion) [Picea glauca][more]
gi|976900938|gb|KVH89091.1|1.1e-0948.94NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H [Cynar... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G010190.1ClCG01G010190.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G010190Watermelon (97103) v2wcgwmbB089
ClCG01G010190Wax gourdwcgwgoB233
ClCG01G010190Cucurbita maxima (Rimu)cmawcgB186
ClCG01G010190Cucurbita maxima (Rimu)cmawcgB342
ClCG01G010190Cucurbita moschata (Rifu)cmowcgB177
ClCG01G010190Wild cucumber (PI 183967)cpiwcgB025
ClCG01G010190Cucumber (Chinese Long) v2cuwcgB022
ClCG01G010190Melon (DHL92) v3.5.1mewcgB140
ClCG01G010190Watermelon (97103) v1wcgwmB146
ClCG01G010190Cucurbita pepo (Zucchini)cpewcgB030
ClCG01G010190Cucurbita pepo (Zucchini)cpewcgB451
ClCG01G010190Bottle gourd (USVL1VR-Ls)lsiwcgB169
ClCG01G010190Cucumber (Gy14) v2cgybwcgB021
ClCG01G010190Melon (DHL92) v3.6.1medwcgB132
ClCG01G010190Silver-seed gourdcarwcgB1012
ClCG01G010190Cucumber (Chinese Long) v3cucwcgB024