ClCG01G010180 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G010180
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	CG_Chr01 : 15181612 .. 15186590 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGACCATGGCTATACATTGTCCCACATCGGTTAGGAAGTAGAACGAAGCCTTTCTTATAAAGGGGGTGGATACCTTTCTATGTACGAGGCCTTTTGGTAGGCGCAACCCGACCAAGAACAAAACCGTGAGGGGTAACCCAAAGCGGACAATATCGTATAGCGGGTAGTCTGGGCTGTTACAAATGGTATCAGAGCCGGTGCCCGAATCGATGTTAAAACCTCACTTGTTAGGGGGGAGATTGTAAAGGTTATGGCGTTGACCCTGGCTATACATTGTCCCACATCAGTTAGGAAGGAGAACGAAGCCTTCCTTATAAAGGGGGTGGATACCTTTCTATGTACGAGGCCTTTTGGTAGGCGCAACCCTACCAAGAACAAAACCGTGAGGGGTAACCCAAAGCGGACGATATCGTATAGCGGGTTGTCTGGGCTGTTACAAATTGTATCAGAGCCGGTGCCCGAATCGATGTTAAAACCTCAATTAGGTCAAACGGGGACGCTTGACTCGTTAGGGGGGGAGATTGTAAGGGCTATGGCATTGACCTTGGCTATACATTGTCCCACATCAGTTAGGAAGGAGAACGAAGCCTTCCTTATAAAGGGGGTGGATACCTTTCTATGTACGAGGCCTTTTGGTAGGCGCAACCCTACCAAGAACAAAACCGTGAGGGGTAACCCAAAGCGGACAATATCGTATAGCGGGTAGTCTGGGCTGTTACACGCATAGTCCTGCGTTAAGAAGTCGTCAATGCATCGTTTGCATTCCTGCGTTAAAACATGCGTTTTAGGCTCAAAAAGTGGTAAAATCATTATCTTCATAAAAATACAAGAGTAGATCGCAAAGGAAGATTTATTAGTAGAATATCAGCATAAACTACTGCATGATTCTCTATTTAATCTCTATTTCTCTAAGAAAAAGGCTATCATAACTTGTATTTCTACAAGTTATCAGTGGCGTTGCGTCACTATGAGATGGCGCCGCTGCACTGGCGCTGTTGTGCTTCTCGTATAGCAGCTCTTAGGAAAAACCGTCATGATAGTGCCGAGCTGGCGACGCGGCGCTGCCCAGTTTTTATGGATTTTGTGATCTTCTTCTCTTTTTCACTTGATTTTGGCTCGGTTTGGTTCTTTTGGCTTTCAATTCTTATTTCTTTTATATTGACCTGAAAACCACTAGTAAACAAGTGAAATTTGATAGAAACTCCCCTAAGTTAAGAGAATAAAAAGAACTTTTCAAGCGCTTTTCAAGGTTCTGTTGGGATTTATTCACTAAAGCCTCATAATTTATTAGTTGATCAATTTAATCATTAATTATGCAATATTAATTTATCCATTAACTGGAAAAATCCTAGGTTATTATTGAAGGAATTGAATCCTTAGCAAAAGCGAGTGATCATCATATGCCAATAATTTTCTTTTTGAAAACTTCAAATTACACAGAAGAGAAACATAAGGATAAACAATTAAAACTAGAAGCATGCATTCAGAGGGAGTAGCATGCATTCAGAGGGAGTTAAGTAGGTTACCTTTGAAGATTGTCTTCAGGGTAGGCTTTTCCTTCTTCTCACGAAATCACGAACAACAAATTCTTCTTTCAACAAGATATGCAGAAAACTTCTTAGGACACCACCAAGCAAGTCTTCCTTGCTATTCTAAGGAAGAATCAAGAGGAGTTGTGGCCTCTCTTGATTTTGATGAGGGAGGAAGAGATTTACTTAAGAGGAATTTTTCAGAGGAAAATAGAAAATTATGTAGCCTTTTCTTCAGCACATCAAAACCTCTCTTGTACTTCTCTCTTTTAACGTGAGATATATGAGAGAGTGGGAATAACTCCCTAAACATGGAAAGTTATTTCCTAATTTAATATTTAATTTACTTTAACAATATTAAATTAATATTAGTTTGAAAATAATATATTAAATCATATTTAATATATATAATTAAATAATATTGATCAAGCAATTAATAAATTAAATATCACATCCTTAATTTAATTTGTATCACATTCAAATAACCTTCTCTCACATCACCTTTAGTTTTAATATGAATCTCATTCATATTAATTTTAATATATAGTTTTTATATGAATCTCATTCATATAATTAATATTTAAAACTTAATTAAATATTTATCTCTCTTATAACATAAAGTATAAATTTTGAATCTCATTAAAAAATAAGTTTAAATTATAATGTAACTATAAACATTATACTAATTGTATCATATATAATTAACTCCCTTATTAATTTGAACATTTCAAATTAATCTAAAATAATAGATTCTTTTTCAAAGCCTTAATGAGCTAGCAAGGAGACCTTATGGACCTATAGATTAGAAGCTCCAATGATATGAGTTAATTAAACTCTTTAATTAGATTAATTAATATTCATTAACTGTAGGTCACTCCACTAAAGACCTATAGCTGCACTTTTCGCACTATAGATATATTTCTATATCTAAGGAAATAACCAATCAACAGAAAGTCGATTCTTAATAAATTACTCGTAACTACAGCTGGATCAAATTACCTTTTTATCCCTGTAGTTACATTTAACTCCTTAAGTATCACCGATCCCTCTAATGAATAAATAGTTTATAGTCCAACTATAAACTAATCCCTCTTAGGCTAGTGAGAGGGTGAAGCCGCTTTGTATAAGACTCGAAATCAACTCTTAAGGGAGCAAGTTATCTACTTACCTTAAAGATGGGAAGGAATGAATTCCATCTTGTGAAGATATGTTCCCAACTCCCTATTCAGACAAATCCCCCAAAATGGTAGGTATATTGAGTCGACGATCTGGTCACTCTCATCCATACAGATCAAAGAAGTAATAGCCTCTTATTTTTTTGAATAAATAAAAGGTATTTACAACTTTACAAATTACGAGACCTCAAGAGATTTTAGACACTAGTCCCAACAATCTTCCACTTGTCCTAAAGCTATTAGGGTGTACAATACATATAAACTAGAGCACCTTTTAGCACGTGGTACACCTCAACAAAATAGTGTATTATAAAGGAGAAATAGAACCTTGTTGGACATGGTTCGATCTAAGATGAGTTATGCTCATCTACCTAATTCTTTTTGGGGTTATGCAGTAGAGACTATAGTTTACATCTTGAACAATGTTCCATCAAAAGTGTTTCTAAAACACCTTTTGAGTTATGGAAAGGTCGTAAAGGTAGTTTACTACATTTCAGGATTTGGGGATGTCCAACACATGCGCTGACAACAAACCCAAAGAAACTGGAACCTCGTTTAAGGGTATGTCTGTTCATAGGTTGTCACAAAGAAACCAAGTCTCTTTTATGATCCTAAGGATAAAAAGGTGTTTGTATCGGAAAATGTTACATTCTTAGAGGAAAATCATATAAGAGATCACAAACCATGCAATAAATTAATTTTAAGTGAAATTTCCATTGAAAATGACAGCACTTCAATAAAAGTTGTTGACAATGCTGGTACATCAACAAGAGTTGTTGATGGTGCTAGATCATCCAATCAAAATCCTTCTCAAGAGTTGAGAGAGCCTCGTTGTAGTGAGAGGGTTATATCTCGCCCTACGCGATATATGAGTTTGATAAAAGTTCATGTCATCATATTTGATGATGGTGTTGAGGATCCATTATCTTTAATACAAGCAATGGAAGATGTTGATAAAGATGAATGGGTCAAAGCCATGGATCTTAAAATGGAATCTATGTATTCCAATTCAATTTAGGATCTTGTAGATCAACCTGATGGGGTAAAATCTATAAGTTGCATATGGATCTACAAGAGAAAAAAAGATGTAGATGGAAAGGTACAGACCTTTAAGGCTAGACTTGTGGTAAAGGGTTATACCTAAGTATAAGAGGTTGATTATGAAGAAACCTGTCATGTTGAAGTCTACTTGCATTCTCTTATCCATTGTCACTTTTTATGACTATGAAATATGGCAAATGGATGTGAAGACTGCTCTTTTGAATGGCAATCTTATTGAGAGCATCTACATGAATCAACCAAAGAGATTCATAAAATAAGGTTAAAAGCAAAAAGTTTGCAAGCTGAAATGGTCCATATATGGATTGAAATATAAGGTTTGACAATGCACTCAAATCTTATGGCTTTGATCAAAACGTTGATGAGGCTTGTGTCTACAAGAAAATCAGCAAAGGTACTATTGCTTTTCTTGTGTTATACGTAAATGACATCTTACTCATTGAAAATGATGTAGGATTTCTTAGTGACATTAAAAACTGGCTATCTACACAATTCCAAATGAAAGATATGGGAGAAGCGCAGTTTGTTCTTGAAATTCAAATTATTCGAAATCGCAAGAACAAAACATTAGCCTTGTCTCAGGCATCTTATATTGATAGAATGTTTGTCAGACATGAATTATATTGTCTAATGATAGTGCTCTAAGACACCTCAAGAGGTTGAGGAGATGAAACGTTATACCCTATGCATCTACTGTGGCAACCTCACGTATGCCATATTGTGTACAAGGCCTAACATATGTTATGCAGTTGGGATTGTCAGTAGGTATCAATCTTATATAGGATTTGATCACTAGATGGTTAAAGACAATCCTCAAGTATCTTAGGAGAACGAGGAACTATACACTTATGTATGATGCTAAGGGTTTGATTCTTACAGGACACACTAACTCTAATTTTCAAACTAATAAGGATTCTAAGAAATCCATATCAAGATCAGTGTTCACTCTTAATGAAGGAACTGTAGTTTGGCGTAGCATAAAACAAGGTTGTGTTGCTGACTTTACCATGGAGGCAGAGTATGTAGTTGCTTGTGAAGCTGCTAAGAAAGTTCTTGATTAATTTGGAAGTTATTCCAAATATGCCTTTTCCAATCACCCTTTATTATGACAACAGTGATGTTGTGGCAAATTCAAAGGAACTTCGAAGTCATAAGCAAGGAAAGCACATAAAACAGAAGTATCATCTAATACAGAAGATTGTACAGTGA

mRNA sequence

ATGGCGTTGACCATGGCTATACATTGTCCCACATCGGGGGTGGATACCTTTCTATGTACGAGGCCTTTTGGTAGGCGCAACCCGACCAAGAACAAAACCCGGGTAGTCTGGGCTGTTACAAATGGTATCAGAGCCGGTGCCCGAATCGATGTTAAAACCTCACTTGTTAGGGGGGAGATTGTAAAGGTTATGGCGTTGACCCTGGCTATACATTGTCCCACATCAGTTAGGAAGGAGAACGAAGCCTTCCTTATAAAGGGGGTGGATACCTTTCTATGTACGAGGCCTTTTGGTAGGCGCAACCCTACCAAGAACAAAACCGTGAGGGGTAACCCAAAGCGGACGATATCGTATAGCGGGTTGTCTGGGCTGTTACAAATTGTATCAGAGCCGGTGCCCGAATCGATGTTAAAACCTCAATTAGGTCAAACGGGGACGCTTGACTCGTTAGGGGGGGAGATTGTAAGGGCTATGGCATTGACCTTGGCTATACATTGTCCCACATCAGTTAGGAAGGAGAACGAAGCCTTCCTTATAAAGGGGGTGGATACCTTTCTATGTACGAGGCCTTTTGGTAGGCGCAACCCTACCAAGAACAAAACCGTGAGGGGTAACCCAAAGCGGACAATATCGTATAGCGGGGAGTTAAGTAGGTTACCTTTGAAGATTGTCTTCAGGGTAGGCTTTTCCTTCTTCTCACGAAATCACGAACAACAAATTCTTCTTTCAACAAGATATGCAGAAAACTTCTTAGGACACCACCAAGCAAGTCTTCCTTGCTATTCTAAGGAAGAATCAAGAGGAGTTGTGGCCTCTCTTGATTTTGATGAGGGAGGAAGAGATTTACTTAAGAGGAATTTTTCAGAGGAAAATAGAAAATTATTAGAGACTATAGTTTACATCTTGAACAATGTTCCATCAAAAGTGTTTCTAAAACACCTTTTGAGTTATGGAAAGGTCGTAAAGGTTGTCACAAAGAAACCAAGTCTCTTTTATGATCCTAAGGATAAAAAGGTGTTTGTATCGGAAAATGTTACATTCTTAGAGGAAAATCATATAAGAGATCACAAACCATGCAATAAATTAATTTTAAGTGAAATTTCCATTGAAAATGACAGCACTTCAATAAAAGTTGTTGACAATGCTGGTACATCAACAAGAGTTGTTGATGGTGCTAGATCATCCAATCAAAATCCTTCTCAAGAGTTGAGAGAGCCTCGTTGTAGTGAGAGGGTTATATCTCGCCCTACGCGATATATGAGTTTGATAAAAGTTCATGTCATCATATTTGATGATGGTGTTGAGGATCCATTATCTTTAATACAAGCAATGGAAGATGTTGATAAAGATGAATGGGATCTTGTAGATCAACCTGATGGGGTAAAATCTATAAGTTGCATATGGATCTACAAGAGAAAAAAAGATGTAGATGGAAAGGTACAGACCTTTAAGGCTAGACTTGTGGCTTGTGTCTACAAGAAAATCAGCAAAGGTACTATTGCTTTTCTTGTGTTATACGTAAATGACATCTTACTCATTGAAAATGATGTAGGATTTCTTAGTGACATTAAAAACTGGCTATCTACACAATTCCAAATGAAAGATATGGGAGAAGCGCAGTTTGTTCTTGAAATTCAAATTATTCGAAATCGCAAGAACAAAACATTAGCCTTGTCTCAGGCATCTTATATTGATAGAATGTTTTGCTCTAAGACACCTCAAGAGGTTGAGGAGATGAAACGTTATACCCTATGCATCTACTGTGGCAACCTCACATGGTTAAAGACAATCCTCAAGTATCTTAGGAGAACGAGGAACTATACACTTATGTATGATGCTAAGGGTTTGATTCTTACAGGACACACTAACTCTAATTTTCAAACTAATAAGGATTCTAAGAAATCCATATCAAGATCAGTGTTCACTCTTAATGAAGGAACTGTAGTTTGGCGTAGCATAAAACAAGGTTGTGTTGCTGACTTTACCATGGAGGCAGAGTATGTAGTTGCTTGTGAAGCTGCTAAGAAAGAACTTCGAAGTCATAAGCAAGGAAAGCACATAAAACAGAAGTATCATCTAATACAGAAGATTGTACAGTGA

Coding sequence (CDS)

ATGGCGTTGACCATGGCTATACATTGTCCCACATCGGGGGTGGATACCTTTCTATGTACGAGGCCTTTTGGTAGGCGCAACCCGACCAAGAACAAAACCCGGGTAGTCTGGGCTGTTACAAATGGTATCAGAGCCGGTGCCCGAATCGATGTTAAAACCTCACTTGTTAGGGGGGAGATTGTAAAGGTTATGGCGTTGACCCTGGCTATACATTGTCCCACATCAGTTAGGAAGGAGAACGAAGCCTTCCTTATAAAGGGGGTGGATACCTTTCTATGTACGAGGCCTTTTGGTAGGCGCAACCCTACCAAGAACAAAACCGTGAGGGGTAACCCAAAGCGGACGATATCGTATAGCGGGTTGTCTGGGCTGTTACAAATTGTATCAGAGCCGGTGCCCGAATCGATGTTAAAACCTCAATTAGGTCAAACGGGGACGCTTGACTCGTTAGGGGGGGAGATTGTAAGGGCTATGGCATTGACCTTGGCTATACATTGTCCCACATCAGTTAGGAAGGAGAACGAAGCCTTCCTTATAAAGGGGGTGGATACCTTTCTATGTACGAGGCCTTTTGGTAGGCGCAACCCTACCAAGAACAAAACCGTGAGGGGTAACCCAAAGCGGACAATATCGTATAGCGGGGAGTTAAGTAGGTTACCTTTGAAGATTGTCTTCAGGGTAGGCTTTTCCTTCTTCTCACGAAATCACGAACAACAAATTCTTCTTTCAACAAGATATGCAGAAAACTTCTTAGGACACCACCAAGCAAGTCTTCCTTGCTATTCTAAGGAAGAATCAAGAGGAGTTGTGGCCTCTCTTGATTTTGATGAGGGAGGAAGAGATTTACTTAAGAGGAATTTTTCAGAGGAAAATAGAAAATTATTAGAGACTATAGTTTACATCTTGAACAATGTTCCATCAAAAGTGTTTCTAAAACACCTTTTGAGTTATGGAAAGGTCGTAAAGGTTGTCACAAAGAAACCAAGTCTCTTTTATGATCCTAAGGATAAAAAGGTGTTTGTATCGGAAAATGTTACATTCTTAGAGGAAAATCATATAAGAGATCACAAACCATGCAATAAATTAATTTTAAGTGAAATTTCCATTGAAAATGACAGCACTTCAATAAAAGTTGTTGACAATGCTGGTACATCAACAAGAGTTGTTGATGGTGCTAGATCATCCAATCAAAATCCTTCTCAAGAGTTGAGAGAGCCTCGTTGTAGTGAGAGGGTTATATCTCGCCCTACGCGATATATGAGTTTGATAAAAGTTCATGTCATCATATTTGATGATGGTGTTGAGGATCCATTATCTTTAATACAAGCAATGGAAGATGTTGATAAAGATGAATGGGATCTTGTAGATCAACCTGATGGGGTAAAATCTATAAGTTGCATATGGATCTACAAGAGAAAAAAAGATGTAGATGGAAAGGTACAGACCTTTAAGGCTAGACTTGTGGCTTGTGTCTACAAGAAAATCAGCAAAGGTACTATTGCTTTTCTTGTGTTATACGTAAATGACATCTTACTCATTGAAAATGATGTAGGATTTCTTAGTGACATTAAAAACTGGCTATCTACACAATTCCAAATGAAAGATATGGGAGAAGCGCAGTTTGTTCTTGAAATTCAAATTATTCGAAATCGCAAGAACAAAACATTAGCCTTGTCTCAGGCATCTTATATTGATAGAATGTTTTGCTCTAAGACACCTCAAGAGGTTGAGGAGATGAAACGTTATACCCTATGCATCTACTGTGGCAACCTCACATGGTTAAAGACAATCCTCAAGTATCTTAGGAGAACGAGGAACTATACACTTATGTATGATGCTAAGGGTTTGATTCTTACAGGACACACTAACTCTAATTTTCAAACTAATAAGGATTCTAAGAAATCCATATCAAGATCAGTGTTCACTCTTAATGAAGGAACTGTAGTTTGGCGTAGCATAAAACAAGGTTGTGTTGCTGACTTTACCATGGAGGCAGAGTATGTAGTTGCTTGTGAAGCTGCTAAGAAAGAACTTCGAAGTCATAAGCAAGGAAAGCACATAAAACAGAAGTATCATCTAATACAGAAGATTGTACAGTGA

Protein sequence

MALTMAIHCPTSGVDTFLCTRPFGRRNPTKNKTRVVWAVTNGIRAGARIDVKTSLVRGEIVKVMALTLAIHCPTSVRKENEAFLIKGVDTFLCTRPFGRRNPTKNKTVRGNPKRTISYSGLSGLLQIVSEPVPESMLKPQLGQTGTLDSLGGEIVRAMALTLAIHCPTSVRKENEAFLIKGVDTFLCTRPFGRRNPTKNKTVRGNPKRTISYSGELSRLPLKIVFRVGFSFFSRNHEQQILLSTRYAENFLGHHQASLPCYSKEESRGVVASLDFDEGGRDLLKRNFSEENRKLLETIVYILNNVPSKVFLKHLLSYGKVVKVVTKKPSLFYDPKDKKVFVSENVTFLEENHIRDHKPCNKLILSEISIENDSTSIKVVDNAGTSTRVVDGARSSNQNPSQELREPRCSERVISRPTRYMSLIKVHVIIFDDGVEDPLSLIQAMEDVDKDEWDLVDQPDGVKSISCIWIYKRKKDVDGKVQTFKARLVACVYKKISKGTIAFLVLYVNDILLIENDVGFLSDIKNWLSTQFQMKDMGEAQFVLEIQIIRNRKNKTLALSQASYIDRMFCSKTPQEVEEMKRYTLCIYCGNLTWLKTILKYLRRTRNYTLMYDAKGLILTGHTNSNFQTNKDSKKSISRSVFTLNEGTVVWRSIKQGCVADFTMEAEYVVACEAAKKELRSHKQGKHIKQKYHLIQKIVQ

Homology

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BLAST of ClCG01G010180 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-10
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 479  KVQTF-KARLVACVY-KKISKGTIAFLVLYVNDILLIENDVGFLSDIKNWLSTQFQMKDM 538
            K QT+ K     CVY K+ S+     L+LYV+D+L++  D G ++ +K  LS  F MKD+
Sbjct: 979  KSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDL 1038

Query: 539  GEAQFVLEIQIIRNRKNKTLALSQASYIDRM 568
            G AQ +L ++I+R R ++ L LSQ  YI+R+
Sbjct: 1039 GPAQQILGMKIVRERTSRKLWLSQEKYIERV 1069

HSP 2 Score: 50.1 bits (118), Expect = 1.2e-04
Identity = 54/196 (27.55%), Postives = 88/196 (44.90%), Query Frame = 1


Query: 332 YDPKDKKVFVSENVTFLEENHIR-----DHKPCNKLILSEISIEN--------DSTSIKV 391
           +DP  KKV  S +V F  E+ +R       K  N +I + ++I +        +ST+ +V
Sbjct: 689 WDPVKKKVIRSRDVVF-RESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEV 748

Query: 392 VDNAGTSTRVVDGARSSNQ------NPSQ--ELREP-RCSERVISRPTRYMSLIKVHVII 451
            +       V++     ++      +P+Q  E  +P R SER      RY S    +V+I
Sbjct: 749 SEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPST--EYVLI 808

Query: 452 FDDGVEDPLSLIQAMEDVDKDE-----------------WDLVDQPDGVKSISCIWIYKR 489
            DD   +P SL + +   +K++                 + LV+ P G + + C W++K 
Sbjct: 809 SDD--REPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKL 868

[Close]

BLAST of ClCG01G010180 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 7.8e-64
Identity = 145/299 (48.49%), Postives = 178/299 (59.53%), Query Frame = 1


Query: 490  CVYKKISKGTIAFLVLYVNDILLIENDVGFLSDIKNWLSTQFQMKDMGEAQFVLEIQIIR 549
            CVYKKI    +AFL+LYV+DILLI NDV +L+D+K WL+TQFQMKD+GEAQ++L IQI+R
Sbjct: 985  CVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVR 1044

Query: 550  NRKNKTLALSQASYIDRMF-------------------------CSKTPQEVEEMKRYTL 609
            NRKNKTLA+SQASYID++                          C KTPQEVE+M+    
Sbjct: 1045 NRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPY 1104

Query: 610  CIYCGNL------------------------------TWLKTILKYLRRTRNYTLMYDAK 669
                G+L                              T +K ILKYLRRTRNY L+Y AK
Sbjct: 1105 SSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAK 1164

Query: 670  GLILTGHTNSNFQTNKDSKKSISRSVFTLNEGTVVWRSIKQGCVADFTMEAEYVVACEAA 699
             LILTG+T+S+FQ++KD++KS S SVFTLN G VVWRS+KQ C+AD TMEAEYV ACEAA
Sbjct: 1165 DLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAA 1224

[Close]

BLAST of ClCG01G010180 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 92/181 (50.83%), Postives = 116/181 (64.09%), Query Frame = 1


Query: 330 LFYDPKDKKVFVSENVTFLEENHIRDHKPCNKLILSEISIENDSTSIKVVDNAGTSTRVV 389
           LFY P++ KVFVS N TFLEE+H R+H+P +K++L E+  +N        D   +ST+VV
Sbjct: 704 LFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEM-FKN------ATDKPSSSTKVV 763

Query: 390 DGARSSNQN-PSQELREPRCSERVISRPTRYMSLIKVHVIIFDDGVEDPLSLIQAMEDVD 449
           D A  S+Q+  SQELR PR S RV+ +P RY+ L++  +II DDGVEDPL+  QAM DVD
Sbjct: 764 DKANISDQSHTSQELRVPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDPLTYKQAMNDVD 823

Query: 450 KDE-----------------WDLVDQPDGVKSISCIWIYKRKKDVDGKVQTFKARLVACV 493
           +D+                 W LVD P  VK I C WIYKRK+D  GKVQTFKARLVA  
Sbjct: 824 RDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKG 877

HSP 2 Score: 219.2 bits (557), Expect = 1.6e-53
Identity = 126/299 (42.14%), Postives = 169/299 (56.52%), Query Frame = 1


Query: 490 CVYKKISKGTIAFLVLYVNDILLIENDVGFLSDIKNWLSTQFQMKDMGEAQFVLEIQIIR 549
           CVYK+I    + FLVLYV+DILLI NDV  LS +KNWL++QFQMKD+GEA ++L IQ+ R
Sbjct: 325 CVYKQIGGDKVVFLVLYVDDILLIGNDVESLSKVKNWLASQFQMKDLGEASYILGIQMTR 384

Query: 550 NRKNKTLALSQASYIDRMF-------------------------CSKTPQEVEEMKRYTL 609
           +RKN+ LALSQA+YID++                          C KTPQ+ E+M+R   
Sbjct: 385 DRKNRLLALSQAAYIDKVLVKFAMENSKKGNLPSRHGVHLSKEQCPKTPQDEEKMRRVPY 444

Query: 610 CIYCGNLTW------------------------------LKTILKYLRRTRNYTLMYDAK 669
               G+L +                              +K ILKYLRRTRNY L+Y  +
Sbjct: 445 ASAVGSLMYAMLCTRPDICFAVGVVSRYQSNPGLDHWVAVKHILKYLRRTRNYMLVYSGR 504

Query: 670 GLILTGHTNSNFQTNKDSKKSISRSVFTLNEGTVVWRSIKQGCVADFTMEAEYVVACEAA 699
            LI  G+T+S+FQ+++DS+KS S +VFTL  G ++WRS+KQ CVAD TMEAEYV ACEAA
Sbjct: 505 ELIPIGYTDSDFQSDRDSRKSTSEAVFTLGGGAIIWRSVKQTCVADSTMEAEYVAACEAA 564

[Close]

BLAST of ClCG01G010180 vs. TrEMBL
Match: A5AUE7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021035 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.7e-23
Identity = 78/217 (35.94%), Postives = 107/217 (49.31%), Query Frame = 1


Query: 290 ENRKLLETIVYILNNVPSKVFLKHLLSYGKVVKVVTKKPSLFYDPKDKKVFVSENVTFLE 349
           + RK+     Y++ NV        L+  GK     T+   LFY  ++ KVFVS N TFLE
Sbjct: 14  ZRRKIHNHGKYLMTNVV------RLIRNGKRYPKGTRG-GLFYSAQENKVFVSTNATFLE 73

Query: 350 ENHIRDHKPCNKLILSEISIENDSTSIKVVDNAGTSTRVVDGARSSNQNPSQELREPRCS 409
            N++ D KP +K++L E+  +  S          T T VV+  R            PR S
Sbjct: 74  YNYMADFKPISKVVLEELLADEISP---------TPTTVVERQRKETTAQDLTPPPPRRS 133

Query: 410 ERVISRPTRYMSLIKVHVIIFDDGVEDPLSLIQAMEDVDKDEWD---------------- 469
            R I  P RY    +  V + D   +DPL+   AM+DVD+++W                 
Sbjct: 134 GREIRLPIRYRENGEAQVAVTDGSDDDPLTFKMAMDDVDREKWQEAMKLEIESMYSNSVW 193

Query: 470 -LVDQPDGVKSISCIWIYKRKKDVDGKVQTFKARLVA 490
            LVD P+G+K I C WIYK K+  +GKV+TFKARLVA
Sbjct: 194 KLVDLPEGIKPIGCKWIYKXKRGPNGKVETFKARLVA 214

HSP 2 Score: 213.4 bits (542), Expect = 8.9e-52
Identity = 131/302 (43.38%), Postives = 165/302 (54.64%), Query Frame = 1


Query: 489  ACVYKKISKGTIAFLVLYVNDILLIENDVGFLSDIKNWLSTQFQMKDMGEAQFVLEIQII 548
            +CVYKKIS   +AFL+LYV+DILLI NDV +L D+K WL+T F MKD+GEAQ++L I+I 
Sbjct: 1000 SCVYKKISGSVVAFLILYVDDILLIGNDVEYLEDVKKWLNTSFSMKDLGEAQYILGIRIY 1059

Query: 549  RNRKNKTLALSQASYIDRMF-------------------------CSKTPQEVEEMKRYT 608
            R+R NKT+ +SQ++YID++                          C KTPQEVE+M+   
Sbjct: 1060 RDRSNKTIGMSQSTYIDKVLSRFKMQDSKKGLLPFRHGIHLSKEQCPKTPQEVEDMRNIP 1119

Query: 609  LCIYCGNL------------------------------TWLKTILKYLRRTRNYTLMYDA 668
                 G+L                              T +K ILKYLRRTRN  L+Y  
Sbjct: 1120 YSSAIGSLMYAMLCTRPDVCYALSIVSRYQSNPGRDHWTAVKNILKYLRRTRNMFLVYGG 1179

Query: 669  -KGLILTGHTNSNFQTNKDSKKSISRSVFTLNEGTVVWRSIKQGCVADFTMEAEYVVACE 700
             K L + G+T+S+FQT+KD  KS S  VFTLN G V WRS KQ CVAD T EAEYV ACE
Sbjct: 1180 DKDLAVKGYTDSSFQTDKDDSKSQS-GVFTLNGGAVSWRSSKQTCVADSTCEAEYVAACE 1239

[Close]

BLAST of ClCG01G010180 vs. TrEMBL
Match: A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 69/181 (38.12%), Postives = 94/181 (51.93%), Query Frame = 1


Query: 331 FYDPKDKKVFVSENVTFLEENHIRDHKPCNKLILSEISIENDSTSIKVVDNAGTSTRVVD 390
           FY P++ KVFV+ N  FLE+  +  H+P +K++L   ++      +   D   +ST+VV 
Sbjct: 712 FYHPQENKVFVATNEAFLEKEFLSRHQPGSKIVLK--AVVEPLIPLDGTDKPSSSTKVVV 771

Query: 391 GARSSNQNPS-----QELREPRCSERVISRPTRYMSLIKVHVIIFDDGVEDPLSLIQAME 450
                N + S     QELR PR S R    P RY+ L++  ++I D+G EDP +  QAM 
Sbjct: 772 DKAEVNDDQSHTPDQQELRVPRRSGRSRRAPNRYLGLVETQIMILDNGEEDPTNYKQAMV 831

Query: 451 DVDKDEW-----------------DLVDQPDGVKSISCIWIYKRKKDVDGKVQTFKARLV 490
             D D+W                  LVD P  VK I C WIYK+K+D D  V  FKARLV
Sbjct: 832 GPDSDQWLKAMNSEMESMYDNKVWTLVDLPSDVKPIGCKWIYKKKRDQDSNVTVFKARLV 890

HSP 2 Score: 187.2 bits (474), Expect = 6.8e-44
Identity = 118/301 (39.20%), Postives = 160/301 (53.16%), Query Frame = 1


Query: 489 ACVYKKISKGTIAFLVLYVNDILLIENDVGFLSDIKNWLSTQFQMKDMGEAQFVLEIQII 548
           +CVYKK +   + FLVLYV+DILLI N +G L+ +K+WLS +F MKD+GEA  +L I+++
Sbjct: 289 SCVYKKWNGKKVVFLVLYVDDILLIGNCIGMLTSVKDWLSQRFDMKDLGEAAHILGIKLM 348

Query: 549 RNRKNKTLALSQASYIDRMF-------------------------CSKTPQEVEEMK--- 608
           RNRK K + LSQA YID +                            KTP+E+E MK   
Sbjct: 349 RNRKKKMIGLSQALYIDTILNRFNMQGSKKGFLPFRHGIXLSKDQSPKTPEEIESMKAVP 408

Query: 609 ---------------RYTLCIYCGNLT----------W--LKTILKYLRRTRNYTLMYDA 668
                          R  +C   G ++          W  +K I+KYL+RTR+Y L++ +
Sbjct: 409 YASAVGSLMYAMLCTRPDICFAVGMVSRFQSNXGREHWXAVKHIIKYLKRTRDYMLVFQS 468

Query: 669 KGLILTGHTNSNFQTNKDSKKSISRSVFTLNEGTVVWRSIKQGCVADFTMEAEYVVACEA 700
           + L   G+T+S+FQ+++DS+KS S +VF L  G + WRSIKQ  VAD TMEAEYV A EA
Sbjct: 469 ENLXPIGYTDSDFQSDQDSRKSTSGNVFXLGGGAISWRSIKQTXVADSTMEAEYVAASEA 528

[Close]

BLAST of ClCG01G010180 vs. TrEMBL
Match: A5C065_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044406 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-06
Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 1


Query: 407 RCSERVISRPTRYMSLIKVHVIIFDDGVEDPLSLIQAMEDVDKDEW-------------- 466
           R S R    P RY  L +    I ++   +P+    A++D D D+W              
Sbjct: 80  RRSGRTRRPPVRYTXLGEAFDRIPEEVNTEPVCYDDALQDKDADKWLVAMKSEMESMYSN 139

Query: 467 ---DLVDQPDGVKSISCIWIYKRKKDVDGKVQTFKARLVACVY 493
              +LV+ P GVK I C WIYK+K+ +DGK +T+KA LVA  Y
Sbjct: 140 QVWELVEPPKGVKPIGCKWIYKKKRGIDGKXZTYKAXLVAKGY 182

HSP 2 Score: 172.2 bits (435), Expect = 2.3e-39
Identity = 100/253 (39.53%), Postives = 145/253 (57.31%), Query Frame = 1


Query: 444 MEDVDKDE-WDLVDQPDGVKSISCIWIYKRKKDVDGKVQTFKARLVACVY---------- 503
           ++ +D+++ WDLVD   G+ +I C W++K+K DVDG VQ  KARLVA  Y          
Sbjct: 104 LKSMDENQVWDLVDLLPGITAIGCKWVFKKKTDVDGNVQIHKARLVAMGYGQVQGIDYDE 163

Query: 504 --------KKISKGTIAFLVLYVNDILLIENDVGFLSDIKNWLSTQFQMKDMGEAQFVLE 563
                   K +S  +I FL+LYV+DILLI ND+  L+  K  L+ +F MKD+GEA ++L 
Sbjct: 164 TYSPVAMLKSLSGSSIVFLILYVDDILLIGNDISMLNSAKESLNGKFSMKDLGEAMYILG 223

Query: 564 IQIIRNRKNKTLALSQASYIDRMFCSKTPQEVEEMKRYTLCIYCGNLTWLKTILKYLRRT 623
           I+I R+R  + L LSQ++   R   +       E               +KT LKYL RT
Sbjct: 224 IKIYRDRSRRLLGLSQSTLTSRYQANPGENHCAE---------------VKTTLKYLIRT 283

Query: 624 RNYTLMY-DAKGLILTGHTNSNFQTNKDSKKSISRSVFTLNEGTVVWRSIKQGCVADFTM 677
           +   L+    + L++ G+ +++FQT++D  +S SR V+ +N G V W S KQ  V D T 
Sbjct: 284 KEMFLVSGGGEDLVVRGYADASFQTDRDDCRSQSRFVYVMNGGAVSWMSSKQDTVVDSTT 341

[Close]

BLAST of ClCG01G010180 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 145/299 (48.49%), Postives = 178/299 (59.53%), Query Frame = 1


Query: 490  CVYKKISKGTIAFLVLYVNDILLIENDVGFLSDIKNWLSTQFQMKDMGEAQFVLEIQIIR 549
            CVYKKI    +AFL+LYV+DILLI NDV +L+D+K WL+TQFQMKD+GEAQ++L IQI+R
Sbjct: 985  CVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVR 1044

Query: 550  NRKNKTLALSQASYIDRMF-------------------------CSKTPQEVEEMKRYTL 609
            NRKNKTLA+SQASYID++                          C KTPQEVE+M+    
Sbjct: 1045 NRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPY 1104

Query: 610  CIYCGNL------------------------------TWLKTILKYLRRTRNYTLMYDAK 669
                G+L                              T +K ILKYLRRTRNY L+Y AK
Sbjct: 1105 SSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAK 1164

Query: 670  GLILTGHTNSNFQTNKDSKKSISRSVFTLNEGTVVWRSIKQGCVADFTMEAEYVVACEAA 699
             LILTG+T+S+FQ++KD++KS S SVFTLN G VVWRS+KQ C+AD TMEAEYV ACEAA
Sbjct: 1165 DLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAA 1224

[Close]

BLAST of ClCG01G010180 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-36
Identity = 92/181 (50.83%), Postives = 116/181 (64.09%), Query Frame = 1


Query: 330 LFYDPKDKKVFVSENVTFLEENHIRDHKPCNKLILSEISIENDSTSIKVVDNAGTSTRVV 389
           LFY P++ KVFVS N TFLEE+H R+H+P +K++L E+  +N        D   +ST+VV
Sbjct: 704 LFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEM-FKN------ATDKPSSSTKVV 763

Query: 390 DGARSSNQN-PSQELREPRCSERVISRPTRYMSLIKVHVIIFDDGVEDPLSLIQAMEDVD 449
           D A  S+Q+  SQELR PR S RV+ +P RY+ L++  +II DDGVEDPL+  QAM DVD
Sbjct: 764 DKANISDQSHTSQELRVPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDPLTYKQAMNDVD 823

Query: 450 KDE-----------------WDLVDQPDGVKSISCIWIYKRKKDVDGKVQTFKARLVACV 493
           +D+                 W LVD P  VK I C WIYKRK+D  GKVQTFKARLVA  
Sbjct: 824 RDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKG 877

HSP 2 Score: 219.2 bits (557), Expect = 2.3e-53
Identity = 126/299 (42.14%), Postives = 169/299 (56.52%), Query Frame = 1


Query: 490 CVYKKISKGTIAFLVLYVNDILLIENDVGFLSDIKNWLSTQFQMKDMGEAQFVLEIQIIR 549
           CVYK+I    + FLVLYV+DILLI NDV  LS +KNWL++QFQMKD+GEA ++L IQ+ R
Sbjct: 325 CVYKQIGGDKVVFLVLYVDDILLIGNDVESLSKVKNWLASQFQMKDLGEASYILGIQMTR 384

Query: 550 NRKNKTLALSQASYIDRMF-------------------------CSKTPQEVEEMKRYTL 609
           +RKN+ LALSQA+YID++                          C KTPQ+ E+M+R   
Sbjct: 385 DRKNRLLALSQAAYIDKVLVKFAMENSKKGNLPSRHGVHLSKEQCPKTPQDEEKMRRVPY 444

Query: 610 CIYCGNLTW------------------------------LKTILKYLRRTRNYTLMYDAK 669
               G+L +                              +K ILKYLRRTRNY L+Y  +
Sbjct: 445 ASAVGSLMYAMLCTRPDICFAVGVVSRYQSNPGLDHWVAVKHILKYLRRTRNYMLVYSGR 504

Query: 670 GLILTGHTNSNFQTNKDSKKSISRSVFTLNEGTVVWRSIKQGCVADFTMEAEYVVACEAA 699
            LI  G+T+S+FQ+++DS+KS S +VFTL  G ++WRS+KQ CVAD TMEAEYV ACEAA
Sbjct: 505 ELIPIGYTDSDFQSDRDSRKSTSEAVFTLGGGAIIWRSVKQTCVADSTMEAEYVAACEAA 564

[Close]

BLAST of ClCG01G010180 vs. NCBI nr
Match: gi|147768021|emb|CAN69397.1| (hypothetical protein VITISV_021035 [Vitis vinifera])

HSP 1 Score: 117.5 bits (293), Expect = 9.6e-23
Identity = 78/217 (35.94%), Postives = 107/217 (49.31%), Query Frame = 1


Query: 290 ENRKLLETIVYILNNVPSKVFLKHLLSYGKVVKVVTKKPSLFYDPKDKKVFVSENVTFLE 349
           + RK+     Y++ NV        L+  GK     T+   LFY  ++ KVFVS N TFLE
Sbjct: 14  ZRRKIHNHGKYLMTNVV------RLIRNGKRYPKGTRG-GLFYSAQENKVFVSTNATFLE 73

Query: 350 ENHIRDHKPCNKLILSEISIENDSTSIKVVDNAGTSTRVVDGARSSNQNPSQELREPRCS 409
            N++ D KP +K++L E+  +  S          T T VV+  R            PR S
Sbjct: 74  YNYMADFKPISKVVLEELLADEISP---------TPTTVVERQRKETTAQDLTPPPPRRS 133

Query: 410 ERVISRPTRYMSLIKVHVIIFDDGVEDPLSLIQAMEDVDKDEWD---------------- 469
            R I  P RY    +  V + D   +DPL+   AM+DVD+++W                 
Sbjct: 134 GREIRLPIRYRENGEAQVAVTDGSDDDPLTFKMAMDDVDREKWQEAMKLEIESMYSNSVW 193

Query: 470 -LVDQPDGVKSISCIWIYKRKKDVDGKVQTFKARLVA 490
            LVD P+G+K I C WIYK K+  +GKV+TFKARLVA
Sbjct: 194 KLVDLPEGIKPIGCKWIYKXKRGPNGKVETFKARLVA 214

HSP 2 Score: 213.4 bits (542), Expect = 1.3e-51
Identity = 131/302 (43.38%), Postives = 165/302 (54.64%), Query Frame = 1


Query: 489  ACVYKKISKGTIAFLVLYVNDILLIENDVGFLSDIKNWLSTQFQMKDMGEAQFVLEIQII 548
            +CVYKKIS   +AFL+LYV+DILLI NDV +L D+K WL+T F MKD+GEAQ++L I+I 
Sbjct: 1000 SCVYKKISGSVVAFLILYVDDILLIGNDVEYLEDVKKWLNTSFSMKDLGEAQYILGIRIY 1059

Query: 549  RNRKNKTLALSQASYIDRMF-------------------------CSKTPQEVEEMKRYT 608
            R+R NKT+ +SQ++YID++                          C KTPQEVE+M+   
Sbjct: 1060 RDRSNKTIGMSQSTYIDKVLSRFKMQDSKKGLLPFRHGIHLSKEQCPKTPQEVEDMRNIP 1119

Query: 609  LCIYCGNL------------------------------TWLKTILKYLRRTRNYTLMYDA 668
                 G+L                              T +K ILKYLRRTRN  L+Y  
Sbjct: 1120 YSSAIGSLMYAMLCTRPDVCYALSIVSRYQSNPGRDHWTAVKNILKYLRRTRNMFLVYGG 1179

Query: 669  -KGLILTGHTNSNFQTNKDSKKSISRSVFTLNEGTVVWRSIKQGCVADFTMEAEYVVACE 700
             K L + G+T+S+FQT+KD  KS S  VFTLN G V WRS KQ CVAD T EAEYV ACE
Sbjct: 1180 DKDLAVKGYTDSSFQTDKDDSKSQS-GVFTLNGGAVSWRSSKQTCVADSTCEAEYVAACE 1239

[Close]

BLAST of ClCG01G010180 vs. NCBI nr
Match: gi|1019597807|gb|AMY96445.1| (gag/pol protein [Momordica dioica])

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-22
Identity = 69/181 (38.12%), Postives = 94/181 (51.93%), Query Frame = 1


Query: 331 FYDPKDKKVFVSENVTFLEENHIRDHKPCNKLILSEISIENDSTSIKVVDNAGTSTRVVD 390
           FY P++ KVFV+ N  FLE+  +  H+P +K++L   ++      +   D   +ST+VV 
Sbjct: 712 FYHPQENKVFVATNEAFLEKEFLSRHQPGSKIVLK--AVVEPLIPLDGTDKPSSSTKVVV 771

Query: 391 GARSSNQNPS-----QELREPRCSERVISRPTRYMSLIKVHVIIFDDGVEDPLSLIQAME 450
                N + S     QELR PR S R    P RY+ L++  ++I D+G EDP +  QAM 
Sbjct: 772 DKAEVNDDQSHTPDQQELRVPRRSGRSRRAPNRYLGLVETQIMILDNGEEDPTNYKQAMV 831

Query: 451 DVDKDEW-----------------DLVDQPDGVKSISCIWIYKRKKDVDGKVQTFKARLV 490
             D D+W                  LVD P  VK I C WIYK+K+D D  V  FKARLV
Sbjct: 832 GPDSDQWLKAMNSEMESMYDNKVWTLVDLPSDVKPIGCKWIYKKKRDQDSNVTVFKARLV 890

HSP 2 Score: 187.2 bits (474), Expect = 9.8e-44
Identity = 118/301 (39.20%), Postives = 160/301 (53.16%), Query Frame = 1


Query: 489 ACVYKKISKGTIAFLVLYVNDILLIENDVGFLSDIKNWLSTQFQMKDMGEAQFVLEIQII 548
           +CVYKK +   + FLVLYV+DILLI N +G L+ +K+WLS +F MKD+GEA  +L I+++
Sbjct: 289 SCVYKKWNGKKVVFLVLYVDDILLIGNCIGMLTSVKDWLSQRFDMKDLGEAAHILGIKLM 348

Query: 549 RNRKNKTLALSQASYIDRMF-------------------------CSKTPQEVEEMK--- 608
           RNRK K + LSQA YID +                            KTP+E+E MK   
Sbjct: 349 RNRKKKMIGLSQALYIDTILNRFNMQGSKKGFLPFRHGIXLSKDQSPKTPEEIESMKAVP 408

Query: 609 ---------------RYTLCIYCGNLT----------W--LKTILKYLRRTRNYTLMYDA 668
                          R  +C   G ++          W  +K I+KYL+RTR+Y L++ +
Sbjct: 409 YASAVGSLMYAMLCTRPDICFAVGMVSRFQSNXGREHWXAVKHIIKYLKRTRDYMLVFQS 468

Query: 669 KGLILTGHTNSNFQTNKDSKKSISRSVFTLNEGTVVWRSIKQGCVADFTMEAEYVVACEA 700
           + L   G+T+S+FQ+++DS+KS S +VF L  G + WRSIKQ  VAD TMEAEYV A EA
Sbjct: 469 ENLXPIGYTDSDFQSDQDSRKSTSGNVFXLGGGAISWRSIKQTXVADSTMEAEYVAASEA 528

[Close]

BLAST of ClCG01G010180 vs. NCBI nr
Match: gi|147822228|emb|CAN64055.1| (hypothetical protein VITISV_044406 [Vitis vinifera])

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-06
Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 1


Query: 407 RCSERVISRPTRYMSLIKVHVIIFDDGVEDPLSLIQAMEDVDKDEW-------------- 466
           R S R    P RY  L +    I ++   +P+    A++D D D+W              
Sbjct: 80  RRSGRTRRPPVRYTXLGEAFDRIPEEVNTEPVCYDDALQDKDADKWLVAMKSEMESMYSN 139

Query: 467 ---DLVDQPDGVKSISCIWIYKRKKDVDGKVQTFKARLVACVY 493
              +LV+ P GVK I C WIYK+K+ +DGK +T+KA LVA  Y
Sbjct: 140 QVWELVEPPKGVKPIGCKWIYKKKRGIDGKXZTYKAXLVAKGY 182

HSP 2 Score: 172.2 bits (435), Expect = 3.3e-39
Identity = 100/253 (39.53%), Postives = 145/253 (57.31%), Query Frame = 1


Query: 444 MEDVDKDE-WDLVDQPDGVKSISCIWIYKRKKDVDGKVQTFKARLVACVY---------- 503
           ++ +D+++ WDLVD   G+ +I C W++K+K DVDG VQ  KARLVA  Y          
Sbjct: 104 LKSMDENQVWDLVDLLPGITAIGCKWVFKKKTDVDGNVQIHKARLVAMGYGQVQGIDYDE 163

Query: 504 --------KKISKGTIAFLVLYVNDILLIENDVGFLSDIKNWLSTQFQMKDMGEAQFVLE 563
                   K +S  +I FL+LYV+DILLI ND+  L+  K  L+ +F MKD+GEA ++L 
Sbjct: 164 TYSPVAMLKSLSGSSIVFLILYVDDILLIGNDISMLNSAKESLNGKFSMKDLGEAMYILG 223

Query: 564 IQIIRNRKNKTLALSQASYIDRMFCSKTPQEVEEMKRYTLCIYCGNLTWLKTILKYLRRT 623
           I+I R+R  + L LSQ++   R   +       E               +KT LKYL RT
Sbjct: 224 IKIYRDRSRRLLGLSQSTLTSRYQANPGENHCAE---------------VKTTLKYLIRT 283

Query: 624 RNYTLMY-DAKGLILTGHTNSNFQTNKDSKKSISRSVFTLNEGTVVWRSIKQGCVADFTM 677
           +   L+    + L++ G+ +++FQT++D  +S SR V+ +N G V W S KQ  V D T 
Sbjct: 284 KEMFLVSGGGEDLVVRGYADASFQTDRDDCRSQSRFVYVMNGGAVSWMSSKQDTVVDSTT 341

The following BLAST results are available for this feature:

BLAST of ClCG01G010180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.4e-10	41.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of ClCG01G010180 vs. TrEMBL


Match Name	E-value	Identity	Description
E2GK51_BRYDI	7.8e-64	48.49	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
E2GK51_BRYDI	1.1e-36	50.83	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
A5AUE7_VITVI	6.7e-23	35.94	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021035 PE=4 SV=1	[more]
A0A165U314_9ROSI	1.5e-22	38.12	Gag/pol protein OS=Momordica dioica PE=4 SV=1	[more]
A5C065_VITVI	1.9e-06	35.92	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044406 PE=4 SV=1	[more]

BLAST of ClCG01G010180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|299474487\|gb\|ADJ18449.1\|	1.1e-63	48.49	gag/pol protein [Bryonia dioica]	[more]
gi\|299474487\|gb\|ADJ18449.1\|	1.5e-36	50.83	gag/pol protein [Bryonia dioica]	[more]
gi\|147768021\|emb\|CAN69397.1\|	9.6e-23	35.94	hypothetical protein VITISV_021035 [Vitis vinifera]	[more]
gi\|1019597807\|gb\|AMY96445.1\|	2.1e-22	38.12	gag/pol protein [Momordica dioica]	[more]
gi\|147822228\|emb\|CAN64055.1\|	2.8e-06	35.92	hypothetical protein VITISV_044406 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G010180.1	ClCG01G010180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 490..570 score: 1.3
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 295..675 score: 5.5
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 295..675 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G010180	Cucurbita pepo (Zucchini)	cpewcgB030
ClCG01G010180	Cucurbita pepo (Zucchini)	cpewcgB451
ClCG01G010180	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G010180	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G010180	Melon (DHL92) v3.6.1	medwcgB132
ClCG01G010180	Silver-seed gourd	carwcgB1012
ClCG01G010180	Cucumber (Chinese Long) v3	cucwcgB024
ClCG01G010180	Watermelon (97103) v2	wcgwmbB089
ClCG01G010180	Wax gourd	wcgwgoB233
ClCG01G010180	Cucurbita maxima (Rimu)	cmawcgB186
ClCG01G010180	Cucurbita maxima (Rimu)	cmawcgB342
ClCG01G010180	Cucurbita moschata (Rifu)	cmowcgB177
ClCG01G010180	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G010180	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G010180	Melon (DHL92) v3.5.1	mewcgB140
ClCG01G010180	Watermelon (97103) v1	wcgwmB146