ClCG01G010050 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G010050
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 14823277 .. 14823561 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGCTCCCACTGAGGAGCAAGTGGCAGAGGCACTTAAGCTGGTTGCTCTAAAAAAAGTCGAGTGGGTCATATCACCCACAGGATGCAGGACACTACGGGCAGGTGACATCAGAGACAACCTGGCCATTTGGCTATATTTCATCAAGCACCGCATCATGCCCACCACACATGACTCTACCATCTCCTTGGAATGTGTCATGTCCCTCCACAACTTGAGAAAAGTCCTCCCAATCAACTTAGGAGTAATCATGAGGAGGGAGTTGGTGGAGTGTAGGCTTTGA

mRNA sequence

ATGTACGCTCCCACTGAGGAGCAAGTGGCAGAGGCACTTAAGCTGGTTGCTCTAAAAAAAGTCGAGTGGGTCATATCACCCACAGGATGCAGGACACTACGGGCAGGTGACATCAGAGACAACCTGGCCATTTGGCTATATTTCATCAAGCACCGCATCATGCCCACCACACATGACTCTACCATCTCCTTGGAATGTGTCATGTCCCTCCACAACTTGAGAAAAGTCCTCCCAATCAACTTAGGAGTAATCATGAGGAGGGAGTTGGTGGAGTGTAGGCTTTGA

Coding sequence (CDS)

ATGTACGCTCCCACTGAGGAGCAAGTGGCAGAGGCACTTAAGCTGGTTGCTCTAAAAAAAGTCGAGTGGGTCATATCACCCACAGGATGCAGGACACTACGGGCAGGTGACATCAGAGACAACCTGGCCATTTGGCTATATTTCATCAAGCACCGCATCATGCCCACCACACATGACTCTACCATCTCCTTGGAATGTGTCATGTCCCTCCACAACTTGAGAAAAGTCCTCCCAATCAACTTAGGAGTAATCATGAGGAGGGAGTTGGTGGAGTGTAGGCTTTGA

Protein sequence

MYAPTEEQVAEALKLVALKKVEWVISPTGCRTLRAGDIRDNLAIWLYFIKHRIMPTTHDSTISLECVMSLHNLRKVLPINLGVIMRRELVECRL
Homology
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BLAST of ClCG01G010050 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.4e-06
Identity = 27/88 (30.68%), Postives = 50/88 (56.82%), Query Frame = 1 

Query: 5   TEEQVAEALKLVALKKVEWVISPTGCRTLRAGDIRDNLAIWLYFIKHRIMPTTHDSTISL 64
           T+EQ+   L  VA++   W ISP G  T    +++ +  IW +F+  R MP+TH  T++ 
Sbjct: 81  TDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAK 140

Query: 65  ECVMSLHNLRKVLPINLGVIMRRELVEC 93
           + V+ L+++   + +N+  I  +E+  C
Sbjct: 141 DRVLLLYSILTGISVNIEEITIKEIKAC 168

The following BLAST results are available for this feature:
BLAST of ClCG01G010050 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QTD9_9ROSA8.4e-0630.68Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G010050.1ClCG01G010050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G010050Cucumber (Gy14) v2cgybwcgB021
ClCG01G010050Melon (DHL92) v3.6.1medwcgB132
ClCG01G010050Silver-seed gourdcarwcgB1012
ClCG01G010050Cucumber (Chinese Long) v3cucwcgB024
ClCG01G010050Watermelon (97103) v2wcgwmbB089
ClCG01G010050Wax gourdwcgwgoB233
ClCG01G010050Cucurbita maxima (Rimu)cmawcgB186
ClCG01G010050Cucurbita maxima (Rimu)cmawcgB342
ClCG01G010050Cucurbita moschata (Rifu)cmowcgB177
ClCG01G010050Wild cucumber (PI 183967)cpiwcgB025
ClCG01G010050Cucumber (Chinese Long) v2cuwcgB022
ClCG01G010050Melon (DHL92) v3.5.1mewcgB140
ClCG01G010050Watermelon (97103) v1wcgwmB146
ClCG01G010050Cucurbita pepo (Zucchini)cpewcgB030
ClCG01G010050Cucurbita pepo (Zucchini)cpewcgB451
ClCG01G010050Bottle gourd (USVL1VR-Ls)lsiwcgB169