ClCG01G009920 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G009920
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionCyclin D3
LocationCG_Chr01 : 14370503 .. 14370988 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCGTCATAGTTCAGTGCAGAGGTGGTTCCCGCCGGTGAGGGGTGGCTTCAAGCTAAACGTTGACGTGGCTTGTCATTTGAATCAGTCGGGGATTGGGCTGGGCGATATGGTTAGACATGATGGTGGAAAGGTGGTTGTGGCCCAAGCTCTATTCCGTTTGGGTTGTTTGAATGTTGAGGCAGGGGAGATTTCGACTTTGTTGGCTGGTTTGCTGCTGGCTCATAACTTAGTGTGTGTGGATCTGTGGGTTGAATCTAATATAGAGATTGTGGTGAAGAACCTCCATTCAACTAACTTTCCTTCTTCTCCTTATGCTGAAATCTATGTTGAAGCTTTAGCTTTGGGTTCTAGTTGGAAATTAAGGACCTTTAGTTTTGTTCCTAGAGGTTGTAATATAATGGCCTATAATCTAGCCCATCAATCATGCTGTGTCAAGTATTCTGACCTTCATGAGTGGCTTTCCCAAATTGTAGGACTTTAA

mRNA sequence

ATGTGGCGTCATAGTTCAGTGCAGAGGTGGTTCCCGCCGGTGAGGGGTGGCTTCAAGCTAAACGTTGACGTGGCTTGTCATTTGAATCAGTCGGGGATTGGGCTGGGCGATATGGTTAGACATGATGGTGGAAAGGTGGTTGTGGCCCAAGCTCTATTCCGTTTGGGTTGTTTGAATGTTGAGGCAGGGGAGATTTCGACTTTGTTGGCTGGTTTGCTGCTGGCTCATAACTTAGTGTGTGTGGATCTGTGGGTTGAATCTAATATAGAGATTGTGGTGAAGAACCTCCATTCAACTAACTTTCCTTCTTCTCCTTATGCTGAAATCTATGTTGAAGCTTTAGCTTTGGGTTCTAGTTGGAAATTAAGGACCTTTAGTTTTGTTCCTAGAGGTTGTAATATAATGGCCTATAATCTAGCCCATCAATCATGCTGTGTCAAGTATTCTGACCTTCATGAGTGGCTTTCCCAAATTGTAGGACTTTAA

Coding sequence (CDS)

ATGTGGCGTCATAGTTCAGTGCAGAGGTGGTTCCCGCCGGTGAGGGGTGGCTTCAAGCTAAACGTTGACGTGGCTTGTCATTTGAATCAGTCGGGGATTGGGCTGGGCGATATGGTTAGACATGATGGTGGAAAGGTGGTTGTGGCCCAAGCTCTATTCCGTTTGGGTTGTTTGAATGTTGAGGCAGGGGAGATTTCGACTTTGTTGGCTGGTTTGCTGCTGGCTCATAACTTAGTGTGTGTGGATCTGTGGGTTGAATCTAATATAGAGATTGTGGTGAAGAACCTCCATTCAACTAACTTTCCTTCTTCTCCTTATGCTGAAATCTATGTTGAAGCTTTAGCTTTGGGTTCTAGTTGGAAATTAAGGACCTTTAGTTTTGTTCCTAGAGGTTGTAATATAATGGCCTATAATCTAGCCCATCAATCATGCTGTGTCAAGTATTCTGACCTTCATGAGTGGCTTTCCCAAATTGTAGGACTTTAA

Protein sequence

MWRHSSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQSCCVKYSDLHEWLSQIVGL
Homology
[Close]
BLAST of ClCG01G009920 vs. NCBI nr
Match: gi|568835766|ref|XP_006471930.1| (PREDICTED: uncharacterized protein LOC102617744 [Citrus sinensis])

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-08
Identity = 48/141 (34.04%), Postives = 68/141 (48.23%), Query Frame = 1 

Query: 3   RHSSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVA---QALFRLGCLN 62
           R  S QRW PP     KLNVD A +     +GLG ++R   G+VV A   QA FR    +
Sbjct: 129 REESQQRWSPPPTNVLKLNVDAATNSKDQKVGLGAVLRDSNGRVVAAGIKQASFR---KD 188

Query: 63  VEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSS 122
           V   E   +  GL +A       L VE++ + V + +++T    S    I  E       
Sbjct: 189 VSFAEAEAIQWGLQIAKKAAAASLIVETDCKDVAELVNNTKGSRSEIFWIISEIQTQKRE 248

Query: 123 WKLRTFSFVPRGCNIMAYNLA 141
           ++   F+FVPR CN  A++LA
Sbjct: 249 FQRIHFNFVPRFCNAHAHSLA 266

[Close]
BLAST of ClCG01G009920 vs. NCBI nr
Match: gi|985434686|ref|XP_015382715.1| (PREDICTED: uncharacterized protein LOC107175626 [Citrus sinensis])

HSP 1 Score: 65.9 bits (159), Expect = 7.6e-08
Identity = 47/141 (33.33%), Postives = 68/141 (48.23%), Query Frame = 1 

Query: 3   RHSSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVA---QALFRLGCLN 62
           R  S QRW PP +   KLNVD A +     +GLG ++R   G+VV A   Q  FR    +
Sbjct: 258 REVSQQRWSPPPKNVLKLNVDAATNNKNQKVGLGAVLRDSNGRVVAAGIKQVSFR---KD 317

Query: 63  VEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSS 122
           V   E   +  GL +A       L VE++ + V + +++T    S    I  E       
Sbjct: 318 VSYAEAEAIQWGLQIAKEAAATSLIVETDCKDVAELVNNTKGSRSEIFWIISEIQTQKRE 377

Query: 123 WKLRTFSFVPRGCNIMAYNLA 141
           ++   F+FVPR CN  A++LA
Sbjct: 378 FQRIHFNFVPRFCNAHAHSLA 395

[Close]
BLAST of ClCG01G009920 vs. NCBI nr
Match: gi|568876828|ref|XP_006491472.1| (PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-08
Identity = 46/136 (33.82%), Postives = 67/136 (49.26%), Query Frame = 1 

Query: 8    QRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVV---VAQALFRLGCLNVEAGE 67
            Q+W PP +   KLNVD A       +GLG +VR   GK++   + QA FR     V   E
Sbjct: 1291 QKWKPPSQNVLKLNVDAAVSTKDQKVGLGAIVRDAEGKILAVGIKQAQFR---ERVSLAE 1350

Query: 68   ISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRT 127
               +  GL +A+ +    L VES+ + VV+ L++T    +    I  +       +K   
Sbjct: 1351 AEAIHWGLQVANQISSSSLIVESDCKEVVELLNNTKGSRTEIHWILSDVRRESKEFKQVQ 1410

Query: 128  FSFVPRGCNIMAYNLA 141
            FSF+PR CN  A+ LA
Sbjct: 1411 FSFIPRTCNTYAHALA 1423

[Close]
BLAST of ClCG01G009920 vs. NCBI nr
Match: gi|985461157|ref|XP_015388394.1| (PREDICTED: uncharacterized protein LOC107178105 [Citrus sinensis])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 47/141 (33.33%), Postives = 66/141 (46.81%), Query Frame = 1 

Query: 3   RHSSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVA---QALFRLGCLN 62
           R  S QRW PP     KLNVD   +     +GLG ++R   G+VV A   QA FR    +
Sbjct: 198 REESQQRWSPPPTNVLKLNVDATTNSKDQKVGLGAVLRDSNGRVVAAGIKQASFR---KD 257

Query: 63  VEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSS 122
           V   E   +  GL +A       L VE++ + + + L++T    S    I  E       
Sbjct: 258 VSFAEAEAIQWGLQIAKEAAAASLIVETDCKDMAELLNNTKGSRSEIFWIISEIQTQKRE 317

Query: 123 WKLRTFSFVPRGCNIMAYNLA 141
           ++   F+FVPR CN  A+ LA
Sbjct: 318 FQRIHFNFVPRFCNAHAHFLA 335

[Close]
BLAST of ClCG01G009920 vs. NCBI nr
Match: gi|985449973|ref|XP_015386105.1| (PREDICTED: uncharacterized protein LOC107177189 [Citrus sinensis])

HSP 1 Score: 62.8 bits (151), Expect = 6.4e-07
Identity = 42/140 (30.00%), Postives = 64/140 (45.71%), Query Frame = 1 

Query: 3   RHSSV--QRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNV 62
           +H  V   RW PP  G FK NVD    ++Q   GLG ++R+  GKVVVA     +    V
Sbjct: 63  KHDDVVQNRWKPPPAGWFKANVDATVKIDQQRTGLGVVIRNPKGKVVVAAMKTTIFLDKV 122

Query: 63  EAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSW 122
           +  E      GL +A +  C+ + +ES+ + VV  +       +    +  E        
Sbjct: 123 DYAEAEATQFGLEIAEHAGCIPVIMESDSQEVVSLMSGKKSTRTEIFWVVAEVHDRIKRL 182

Query: 123 KLRTFSFVPRGCNIMAYNLA 141
           K     + PR CN +A++LA
Sbjct: 183 KHVKVQYTPRNCNSVAHSLA 202

The following BLAST results are available for this feature:
BLAST of ClCG01G009920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|568835766|ref|XP_006471930.1|2.6e-0834.04PREDICTED: uncharacterized protein LOC102617744 [Citrus sinensis][more]
gi|985434686|ref|XP_015382715.1|7.6e-0833.33PREDICTED: uncharacterized protein LOC107175626 [Citrus sinensis][more]
gi|568876828|ref|XP_006491472.1|9.9e-0833.82PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis][more]
gi|985461157|ref|XP_015388394.1|2.2e-0733.33PREDICTED: uncharacterized protein LOC107178105 [Citrus sinensis][more]
gi|985449973|ref|XP_015386105.1|6.4e-0730.00PREDICTED: uncharacterized protein LOC107177189 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G009920.1ClCG01G009920.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 18..145
score: 1.9
NoneNo IPR availablePANTHERPTHR33033FAMILY NOT NAMEDcoord: 7..142
score: 1.2
NoneNo IPR availablePFAMPF13456RVT_3coord: 21..142
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G009920Cla004569Watermelon (97103) v1wcgwmB157
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G009920Melon (DHL92) v3.5.1mewcgB140
ClCG01G009920Cucurbita pepo (Zucchini)cpewcgB451
ClCG01G009920Cucurbita pepo (Zucchini)cpewcgB496
ClCG01G009920Bottle gourd (USVL1VR-Ls)lsiwcgB169
ClCG01G009920Cucumber (Gy14) v2cgybwcgB022
ClCG01G009920Melon (DHL92) v3.6.1medwcgB132
ClCG01G009920Silver-seed gourdcarwcgB0218
ClCG01G009920Cucumber (Chinese Long) v3cucwcgB025
ClCG01G009920Watermelon (97103) v2wcgwmbB089
ClCG01G009920Wax gourdwcgwgoB233
ClCG01G009920Cucumber (Gy14) v1cgywcgB570
ClCG01G009920Cucurbita maxima (Rimu)cmawcgB186
ClCG01G009920Cucurbita maxima (Rimu)cmawcgB342
ClCG01G009920Cucurbita maxima (Rimu)cmawcgB350
ClCG01G009920Cucurbita moschata (Rifu)cmowcgB177
ClCG01G009920Cucurbita moschata (Rifu)cmowcgB340
ClCG01G009920Wild cucumber (PI 183967)cpiwcgB026
ClCG01G009920Cucumber (Chinese Long) v2cuwcgB023