ClCG01G009890 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G009890
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 14224168 .. 14225658 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTTGAGGTGAACAAAGGACTGGGACGAAATACAGAATGCTCAAAAACTTTCTTTCTCGAGGCATGCCTGGGTCCTTTTAGCCCTGAGTTGCATTATGACATATCAATCTCAGGCCTCGATCTCGCCCAAGATTGTACTGAGATTGGAAGCAATTTTCTTAGTTTTTTTTAAGTTTTTGTCATGGTCGTTTTGTTGTTTTGGTGCTAAGTGTAGCCATTGTCTTCTCTTTTGTTTTCTAGATGGCGTTGGTACCTAAAATTCGCACTTCTAATTTTTTCTAGCTAATCTGACTTGTTGTTCCCATCTGGGGAAAACAATTGCAAACATTAAGAAGAAGCTAATGTCTAGACAGTTATATATGTTCAGGCAAACCTGTTTTGGTCATTTTTTGGATCTTAAGTTAGTTTTTAATTGGCTTATGTGCCACTATATTCTTTTGAGGGAGGCCAAGGAAAGCAGGGAAGAAGACACTATTAGTTAAATTACTAGGGAAGAAAGTGTCGTTTGGGTGAGAACATTTTGATCTTGTCACGGGTTTGAGATACAGTTGTAGGGGGGTGGTTGAGGCTGATCCCCATAGACTACATAGGCTGAGGCAGTTGCACTTGGCTGATAAACTTGGCATGTGATGGACTGAGTTGGACAATTTGTTCCTTAACTATGAGTTCGAGAGTGACGAGGATGCAGTTAAGATGGCTATATTCTACTTCCTCGAGCTCGCTATGATGGGGAGGGAGAGGAGACAACACATGGATTGGATGATGTTGGATTTTATTGACATATGGGAGGACTTCTGTAGTTGCGACTGGAGCCAACATGGTGTTTCAAAAGATGTTGGCTAGCTTATAGGGTGCATTTCGAGGGAATGTTGCACTCTACGAGAAGAAGCCTTCTAATAGTAAATCACCCAAGTAGTACAATTTATACAACTTCTTGTTTGCATTCCAGGTTTGTTTATTTAAATTCATATGTGTTTCCTCATGTTTACCTCTAATTTAATCACTTCTAATACCTCTAATTTAATTAACTTCTAATACATTTGTTGTTTGTTTTGCTAGGTATGAGTGTATGAGACTATCGCATAGCTCAACGCATAGGTTACGTCTCGGATCACCAATGATGTGATCCCACACATCTGTATATGGACTTTCATGTACTCACTTGGAGCGAAGGTTATTTAGACCCAAGTGTTTAGGTCTCAAGTGGTAAGCCTTCGTTTACATTGTTACGTTATGGTAGTATTTTTAAATAGTAATTATTATATTTTCATAATTGTTGCATGCAAGCTGGGATACTAGATATTGCTCCTATGATGCTGAGTAGGACTATTTGGCCCGGTATTTGGACCCTCCGTGCAAAAATGGATACCAAAAACCCCCTCTTGTTGAAGCACTTGTTGCATCATTGACCGGCAAGGGTGTTGAAGGGGGCGATGTGAAGGAATTGAATCCTCAGAGGAAGCGAATGAATGCCTTGTGCCAATAA

mRNA sequence

ATGCCATTTGAGGTGAACAAAGGACTGGGACGAAATACAGAATGCTCAAAAACTTTCTTTCTCGAGGCATGCCTGGGTCCTTTTAGCCCTGAGTTGCATTATGACATATCAATCTCAGGCCTCGATCTCGCCCAAGATTGGAGGCCAAGGAAAGCAGGGAAGAAGACACTATTAGTTAAATTACTAGGGAAGAAAGTGTCGTTTGGGGGGGTGGTTGAGGCTGATCCCCATAGACTACATAGGCTGAGGCAGTTGCACTTGGCTGATAAACTTGGCATTGACGAGGATGCAGTTAAGATGGCTATATTCTACTTCCTCGAGCTCGCTATGATGGGGAGGGAGAGGAGACAACACATGGATTGGATGATGTTGGATTTTATTGACATATGGGAGGACTTCTGTAGTTGCGACTGGAGCCAACATGGTGTTTCAAAAGATGTTACGTCTCGGATCACCAATGATGTGATCCCACACATCTGTATATGGACTTTCATGTACTCACTTGGAGCGAAGGACTATTTGGCCCGGTATTTGGACCCTCCGTGCAAAAATGGATACCAAAAACCCCCTCTTGTTGAAGCACTTGTTGCATCATTGACCGGCAAGGGTGTTGAAGGGGGCGATGTGAAGGAATTGAATCCTCAGAGGAAGCGAATGAATGCCTTGTGCCAATAA

Coding sequence (CDS)

ATGCCATTTGAGGTGAACAAAGGACTGGGACGAAATACAGAATGCTCAAAAACTTTCTTTCTCGAGGCATGCCTGGGTCCTTTTAGCCCTGAGTTGCATTATGACATATCAATCTCAGGCCTCGATCTCGCCCAAGATTGGAGGCCAAGGAAAGCAGGGAAGAAGACACTATTAGTTAAATTACTAGGGAAGAAAGTGTCGTTTGGGGGGGTGGTTGAGGCTGATCCCCATAGACTACATAGGCTGAGGCAGTTGCACTTGGCTGATAAACTTGGCATTGACGAGGATGCAGTTAAGATGGCTATATTCTACTTCCTCGAGCTCGCTATGATGGGGAGGGAGAGGAGACAACACATGGATTGGATGATGTTGGATTTTATTGACATATGGGAGGACTTCTGTAGTTGCGACTGGAGCCAACATGGTGTTTCAAAAGATGTTACGTCTCGGATCACCAATGATGTGATCCCACACATCTGTATATGGACTTTCATGTACTCACTTGGAGCGAAGGACTATTTGGCCCGGTATTTGGACCCTCCGTGCAAAAATGGATACCAAAAACCCCCTCTTGTTGAAGCACTTGTTGCATCATTGACCGGCAAGGGTGTTGAAGGGGGCGATGTGAAGGAATTGAATCCTCAGAGGAAGCGAATGAATGCCTTGTGCCAATAA

Protein sequence

MPFEVNKGLGRNTECSKTFFLEACLGPFSPELHYDISISGLDLAQDWRPRKAGKKTLLVKLLGKKVSFGGVVEADPHRLHRLRQLHLADKLGIDEDAVKMAIFYFLELAMMGRERRQHMDWMMLDFIDIWEDFCSCDWSQHGVSKDVTSRITNDVIPHICIWTFMYSLGAKDYLARYLDPPCKNGYQKPPLVEALVASLTGKGVEGGDVKELNPQRKRMNALCQ
Homology
[Close]
BLAST of ClCG01G009890 vs. TrEMBL
Match: A0A0A0L7D5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G379230 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.2e-11
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 81  RLRQLHLADKLGI----------------DEDAVKMAIFYFLELAMMGRERRQHMDWMML 140
           RLRQL+L D+  +                DED VK+++FYF+ELAM+GRERRQHMDW ML
Sbjct: 15  RLRQLYLGDRSNMNGLELDKDYLTLTFESDEDVVKISLFYFVELAMIGRERRQHMDWTML 74

[Close]
BLAST of ClCG01G009890 vs. NCBI nr
Match: gi|700202762|gb|KGN57895.1| (hypothetical protein Csa_3G379230 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 6.0e-11
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 81  RLRQLHLADKLGI----------------DEDAVKMAIFYFLELAMMGRERRQHMDWMML 140
           RLRQL+L D+  +                DED VK+++FYF+ELAM+GRERRQHMDW ML
Sbjct: 15  RLRQLYLGDRSNMNGLELDKDYLTLTFESDEDVVKISLFYFVELAMIGRERRQHMDWTML 74

The following BLAST results are available for this feature:
BLAST of ClCG01G009890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7D5_CUCSA4.2e-1151.32Uncharacterized protein OS=Cucumis sativus GN=Csa_3G379230 PE=4 SV=1[more]
BLAST of ClCG01G009890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202762|gb|KGN57895.1|6.0e-1151.32hypothetical protein Csa_3G379230 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G009890.1ClCG01G009890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G009890Cucurbita pepo (Zucchini)cpewcgB451
ClCG01G009890Cucurbita pepo (Zucchini)cpewcgB496
ClCG01G009890Bottle gourd (USVL1VR-Ls)lsiwcgB169
ClCG01G009890Cucumber (Gy14) v2cgybwcgB022
ClCG01G009890Melon (DHL92) v3.6.1medwcgB132
ClCG01G009890Silver-seed gourdcarwcgB0218
ClCG01G009890Cucumber (Chinese Long) v3cucwcgB025
ClCG01G009890Watermelon (97103) v2wcgwmbB089
ClCG01G009890Wax gourdwcgwgoB233
ClCG01G009890Cucumber (Gy14) v1cgywcgB570
ClCG01G009890Cucurbita maxima (Rimu)cmawcgB186
ClCG01G009890Cucurbita maxima (Rimu)cmawcgB342
ClCG01G009890Cucurbita moschata (Rifu)cmowcgB177
ClCG01G009890Cucurbita moschata (Rifu)cmowcgB340
ClCG01G009890Wild cucumber (PI 183967)cpiwcgB026
ClCG01G009890Cucumber (Chinese Long) v2cuwcgB023
ClCG01G009890Melon (DHL92) v3.5.1mewcgB140
ClCG01G009890Watermelon (97103) v1wcgwmB157