ClCG01G009760 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G009760
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRetrotransposon protein
LocationCG_Chr01 : 13926590 .. 13927851 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTCGTGATAAGATGAAGAAACATACTTGGTCGAAAGTCGAAGATGTAAAGTTGGTCGAAGCGTTACTGCATTTGGTCGAGACTGGTTGGCGAGCTGATAATGGGACTTTCAACCCTGGCTATCTACACCAACTTCAACATTTGCTGAATGTTCCAAACAATGATATAGGGTTATCAATGATGCACAATTTAAGTGTTAACCGCAAGTATAAGTCCGAATATTGTTCCACTAAGGATCCAATTGTGAAGGTTTTAAGTTACTTAGCTATTCTAGAATCAAGTCAATTTTATTTGAGGATTGGAATTTAAGTTGTGAATTTTGGAAAATATAAACTAAATAAGGAAAGCAAGTAAAGTAAGAAACACAAGAGTCAAAGAGAGTTCTAGGGTAATGGATCATTGTTTATCTCATCATGCAATATTCTACGGTTCATGGATTTTATTATAATTTAAATGCTTAAGTCTAGAAACTTAATTCCAGGTTATTTTCTCTAAAAAAACAACCCTTTCTCACGCAACTCAATTGATTACTAATCTATTGAAATCAATACAAATTACATGGCATTAAGAATAGTCTTTGGCAACTTTCATTGTTGACCTAACTATTTTCATGATAGATTAACAACAATTCTTTGTTATAGATCTAGTTAAACATACAATCTTTCAATCATACATCTAACCTATCATTCAAACATGGCCATTCAACAAGAATTTAAGCACAATAACAAAGAAAAGCATAACCATTACAACAAAACCATGAATAGTTTACAATATCAACATAACTTTATAAACAATTCATCAAAACCCTAAAACTAAAGAGTTTAGCCCCTCATAGCTTGAAGCAACATGTTCAAATAATATAAACAAAGAAAGAGTGTAAAGAAAGGGAAACTCTACTGAAAAGAGGCTCTTGATTGAGTAAGCACCGTCACAATCTCCTTGGCTTTCACGTTGGAACTCGAATGGCACCACGACTCTCTCGAATTCTTTTCCTCTTCCTTGCAGCTAACTCACTCTTTGAACTCTCTAATGAACTTTCACTCAATTCTCTCCTTCTTGTGTCTCTTTTGGTTTGTAGATTTGTGATTATGGTTGCTGGAAGCCCTCTTATTTATAGAATTGGCCGCCCAAATTTCTTTCCAAAAATGCAAAATCTTCAAATTAGGAAAGCTGGCGCCGCAGCACTGACCGATATGGAAAGTTGGGGTCACGGTGCTGACCGTCATGGAAAGCTACCCTCGGTCACCGTGCCGTAG

mRNA sequence

ATGGCAAGTCGTGATAAGATGAAGAAACATACTTGGTCGAAAGTCGAAGATGTAAAGTTGGTCGAAGCGTTACTGCATTTGGTCGAGACTGGTTGGCGAGCTGATAATGGGACTTTCAACCCTGGCTATCTACACCAACTTCAACATTTGCTGAATGTTCCAAACAATGATATAGGGTTATCAATGATGCACAATTTAAGTGTTAACCGCAAGTATAAGTCCGAATATTGTTCCACTAAGGATCCAATTGTGAAGGTTTTAACACTGACCGATATGGAAAGTTGGGGTCACGGTGCTGACCGTCATGGAAAGCTACCCTCGGTCACCGTGCCGTAG

Coding sequence (CDS)

ATGGCAAGTCGTGATAAGATGAAGAAACATACTTGGTCGAAAGTCGAAGATGTAAAGTTGGTCGAAGCGTTACTGCATTTGGTCGAGACTGGTTGGCGAGCTGATAATGGGACTTTCAACCCTGGCTATCTACACCAACTTCAACATTTGCTGAATGTTCCAAACAATGATATAGGGTTATCAATGATGCACAATTTAAGTGTTAACCGCAAGTATAAGTCCGAATATTGTTCCACTAAGGATCCAATTGTGAAGGTTTTAACACTGACCGATATGGAAAGTTGGGGTCACGGTGCTGACCGTCATGGAAAGCTACCCTCGGTCACCGTGCCGTAG

Protein sequence

MASRDKMKKHTWSKVEDVKLVEALLHLVETGWRADNGTFNPGYLHQLQHLLNVPNNDIGLSMMHNLSVNRKYKSEYCSTKDPIVKVLTLTDMESWGHGADRHGKLPSVTVP
Homology
[Close]
BLAST of ClCG01G009760 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.1e-08
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1 

Query: 1   MASRDKMKKHTWSKVEDVKLVEALLHLVETG-WRADNGTFNPGYLHQLQHLL--NVPNND 60
           M S  ++ KHTW+K E+  LVE L+ LV  G WR+DNGTF PGYL+QL  ++   +P ++
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  IGLS 62
           I  S
Sbjct: 416 IHAS 419

[Close]
BLAST of ClCG01G009760 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 8.9e-08
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 

Query: 1  MASRDKMKKHTWSKVEDVKLVEALLHLVETG-WRADNGTFNPGYLHQLQHLL 52
          MAS  +  KHTW+K E+ K VE L+ LV +G WR+DNGTF PGYL QLQ ++
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMM 52

[Close]
BLAST of ClCG01G009760 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1 

Query: 1   MASRDKMKKHTWSKVEDVKLVEALLHLVETG-WRADNGTFNPGYLHQLQHLL--NVPNND 60
           M S  ++ KHTW+K E+  LVE L+ LV  G WR+DNGTF PGYL+QL  ++   +P ++
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  IGLS 62
           I  S
Sbjct: 416 IHAS 419

[Close]
BLAST of ClCG01G009760 vs. NCBI nr
Match: gi|659133698|ref|XP_008466863.1| (PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1 

Query: 1   MASRDKMKKHTWSKVEDVKLVEALLHLVETG-WRADNGTFNPGYLHQLQHLL 52
           M S  ++ KHTW+K E+  LVE L+ LV  G WR+DNGTF PGYL+QL  ++
Sbjct: 209 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMM 260

[Close]
BLAST of ClCG01G009760 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-07
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1 

Query: 1  MASRDKMKKHTWSKVEDVKLVEALLHLVET-GWRADNGTFNPGYLHQLQHLL--NVPNND 59
          MAS  +  KH W+K E+ KLVE L+ LV   GWR+DNGTF  GYL QLQ ++   +P+ +
Sbjct: 1  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

[Close]
BLAST of ClCG01G009760 vs. NCBI nr
Match: gi|659100589|ref|XP_008451169.1| (PREDICTED: uncharacterized protein LOC103492547 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-07
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 1   MASRDKMKKHTWSKVEDVKLVEALLHLVETG-WRADNGTFNPGYLHQLQHLL--NVPNND 60
           M S  ++ KH+W+K E+  L+E L+ LV  G WR+DNGTF PGYL+QL  ++   +P  +
Sbjct: 218 MTSSSRLPKHSWTKEEEAGLIECLVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 277

Query: 61  IGLSMMHNLSVNRKYK 74
           I     H L+++ + K
Sbjct: 278 I-----HALTIDSRIK 288

The following BLAST results are available for this feature:
BLAST of ClCG01G009760 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB5_CUCME8.1e-0848.44Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of ClCG01G009760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082641|ref|XP_008441954.1|8.9e-0857.69PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|307136287|gb|ADN34114.1|1.2e-0748.44retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659133698|ref|XP_008466863.1|3.4e-0753.85PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo][more]
gi|659113923|ref|XP_008456820.1|5.8e-0750.82PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo][more]
gi|659100589|ref|XP_008451169.1|5.8e-0740.79PREDICTED: uncharacterized protein LOC103492547 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G009760.1ClCG01G009760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G009760Cucurbita moschata (Rifu)cmowcgB177
ClCG01G009760Cucurbita moschata (Rifu)cmowcgB340
ClCG01G009760Wild cucumber (PI 183967)cpiwcgB026
ClCG01G009760Cucumber (Chinese Long) v2cuwcgB023
ClCG01G009760Melon (DHL92) v3.5.1mewcgB140
ClCG01G009760Watermelon (97103) v1wcgwmB157
ClCG01G009760Cucurbita pepo (Zucchini)cpewcgB451
ClCG01G009760Cucurbita pepo (Zucchini)cpewcgB496
ClCG01G009760Bottle gourd (USVL1VR-Ls)lsiwcgB169
ClCG01G009760Cucumber (Gy14) v2cgybwcgB022
ClCG01G009760Melon (DHL92) v3.6.1medwcgB132
ClCG01G009760Silver-seed gourdcarwcgB0114
ClCG01G009760Silver-seed gourdcarwcgB0218
ClCG01G009760Cucumber (Chinese Long) v3cucwcgB025
ClCG01G009760Watermelon (97103) v2wcgwmbB089
ClCG01G009760Wax gourdwcgwgoB240
ClCG01G009760Cucumber (Gy14) v1cgywcgB570
ClCG01G009760Cucurbita maxima (Rimu)cmawcgB186
ClCG01G009760Cucurbita maxima (Rimu)cmawcgB342