ClCG01G009600 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G009600
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr01 : 13449676 .. 13450550 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACTACAGTGCCAACCTCGACTAAAACTCCAGCTGTTATCTAGGATTTTTCGGCCTCCGATTTCGACAAATGCTCTTCTAAATCCAGTGCTCTCGACTCCATTGCAAAATGTTTATCCTCCTTTTCGACTTGCTACTCCACCTTTCCAACAATTGGTACAATATAATCCTCCATTTTATAACCCACCACCACCTTTTCAGCCTTACCAGTAACATCCCTTTTTTCAACGACCTAATTTCCCTCCTCAACAATTTTATCCCTAATCTCAGCCTCCATTTCATGCCACATTTCAACCTACTCTTCCCCAACCTCTATCAGTCAAGCTAAATGATACAAACTTTCTTTTGGGAAAGAATCAACTTCTGAATGCGGTTATGGCAAATGGGCTTGAAGGTTTTCTTTATGAAACTATTATGTGTCCTCAATTTCTGAATCACGCTCAGACTCAGTTAAATCCAAATTACACTACTTGGCACAGGTATAATCGTTACATAATGTGTTGGCAATATTCCTCTCTATCTAAAGAGTAAAATGGGTGAGATAGTTTCTCTAAACACTACTTTTGATATATGGAATGCTCTTAGCCGTTCATATGATTCTAAGACTACATCACGAATAATGGGCCTTAAAACTCAACTTCATAAAATTAAAAAGGATAGGTTATCTGTATCTCAATATCTATCTCAGATTAAGGATGTTGCTGATAAATTTTACTATTGGTGAACCAATTTCTTATAGAGGAGATCACTTAGCTCATATTCTAGATGGATTGAGTAGTGAATACAATGCTTTTGTTACATCTATTCAGAATAGAACTGATAACCCATCTTTAGAAGACGTAAGGAGTTTGTTACTTGCTTATGAGGCTTGA

mRNA sequence

ATGTTACTACAGTGCCAACCTCGACTAAAACTCCAGCTGTTATCTAGGATTTTTCGGCCTCCGATTTCGACAAATGCTCTTCTAAATCCAGTGCTCTCGACTCCATTGCAAAATGTTTATCCTCCTTTTCGACTTGCTACTCCACCTTTCCAACAATTGCCTCCATTTCATGCCACATTTCAACCTACTCTTCCCCAACCTCTATCAGTCAAGCTAAATGATACAAACTTTCTTTTGGGAAAGAATCAACTTCTGAATGCGGTTATGGCAAATGGGCTTGAAGGTTTTCTTTATGAAACTATTATGTGTCCTCAATTTCTGAATCACGCTCAGACTCAGTTAAATCCAAATTACACTACTTGGCACAGATTAAGGATGTTGCTGATAAATTTTACTATTGGTGAACCAATTTCTTATAGAGGAGATCACTTAGCTCATATTCTAGATGGATTGAGTAGTGAATACAATGCTTTTGTTACATCTATTCAGAATAGAACTGATAACCCATCTTTAGAAGACGTAAGGAGTTTGTTACTTGCTTATGAGGCTTGA

Coding sequence (CDS)

ATGTTACTACAGTGCCAACCTCGACTAAAACTCCAGCTGTTATCTAGGATTTTTCGGCCTCCGATTTCGACAAATGCTCTTCTAAATCCAGTGCTCTCGACTCCATTGCAAAATGTTTATCCTCCTTTTCGACTTGCTACTCCACCTTTCCAACAATTGCCTCCATTTCATGCCACATTTCAACCTACTCTTCCCCAACCTCTATCAGTCAAGCTAAATGATACAAACTTTCTTTTGGGAAAGAATCAACTTCTGAATGCGGTTATGGCAAATGGGCTTGAAGGTTTTCTTTATGAAACTATTATGTGTCCTCAATTTCTGAATCACGCTCAGACTCAGTTAAATCCAAATTACACTACTTGGCACAGATTAAGGATGTTGCTGATAAATTTTACTATTGGTGAACCAATTTCTTATAGAGGAGATCACTTAGCTCATATTCTAGATGGATTGAGTAGTGAATACAATGCTTTTGTTACATCTATTCAGAATAGAACTGATAACCCATCTTTAGAAGACGTAAGGAGTTTGTTACTTGCTTATGAGGCTTGA

Protein sequence

MLLQCQPRLKLQLLSRIFRPPISTNALLNPVLSTPLQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYEA

Homology

[Close]

BLAST of ClCG01G009600 vs. TrEMBL
Match: A5BMF5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037657 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.8e-13
Identity = 45/132 (34.09%), Postives = 77/132 (58.33%), Query Frame = 1


Query: 62  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMCPQFLNHAQTQLNPNYTTW 121
           P+L Q  +V+L+ +N+LL + Q+LN ++ANGLE  ++  I  P         +NP Y+ W
Sbjct: 23  PSLNQAFTVRLDQSNYLLWRTQMLNIIIANGLEEMIHGKIXAPSRFLGDSENINPEYSIW 82

Query: 122 HRLRMLLINF-----------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPS 181
            R   L++ +            IGE I+ + D + ++L GL +EYN+FV ++ +R +  S
Sbjct: 83  QRQNRLVMCWIYSSLTEDNLLAIGENITEQ-DRILYLLAGLRAEYNSFVITVTSRHEPLS 142

Query: 182 LEDVRSLLLAYE 183
           LE++ S+LL +E
Sbjct: 143 LEEIHSMLLTHE 153

[Close]

BLAST of ClCG01G009600 vs. TrEMBL
Match: U5FS17_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s10690g PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 53/166 (31.93%), Postives = 81/166 (48.80%), Query Frame = 1


Query: 55  PFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMCPQF-LNHAQTQ 114
           P H     TLP    VKL+ +N++L ++Q+ N V ANG E F+  T +CP+  L+     
Sbjct: 27  PTHQMLNHTLP----VKLDRSNYVLWRSQIDNVVFANGFEDFIDGTAICPEKELSPGIIG 86

Query: 115 LNPNYTTWHRLR-------------------------MLLINF------------TIGEP 174
            N ++TTW+ L                          + +I++             IGEP
Sbjct: 87  YNTSHTTWNALEKTFSSSSKARIMQLRLELQSTKKGSLSMIDYIMKVKGAADNLAAIGEP 146

Query: 175 ISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYE 183
           +  + D + ++L GL S+YNA VT+I  R D  S+E V S+LLA+E
Sbjct: 147 VLEQ-DQVMNLLGGLGSDYNAVVTAINIRDDKISIEAVHSMLLAFE 187

[Close]

BLAST of ClCG01G009600 vs. TrEMBL
Match: A5BPS3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013628 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.1e-09
Identity = 46/138 (33.33%), Postives = 68/138 (49.28%), Query Frame = 1


Query: 78  LLGKNQLLNAVMANGLEGFLY-ETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINF----- 137
           L    Q +N    + LE F+  ET +  +FL+ AQ Q+NP +  W R+  L++++     
Sbjct: 11  LTANPQNINPTPISSLEDFIEGETPIPAKFLDDAQLQINPLFIQWERMNRLVMSWIYSSL 70

Query: 138 ----------------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQ 182
                                        +GEP+SYR D L + L+GL+ EY+ FVTSI 
Sbjct: 71  TLAMKIKKEGITISEYLARIKEVFDKYSAMGEPLSYR-DKLMYTLNGLTEEYDGFVTSIY 130

[Close]

BLAST of ClCG01G009600 vs. TrEMBL
Match: W9RJ64_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010911 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.9e-08
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1


Query: 55  PFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQ 114
           P   T  PT+   LS+KL+D NFLL KNQ+LN ++A+G + F+  +  C P+FL +   +
Sbjct: 31  PSSITTIPTVNPQLSIKLDDDNFLLWKNQMLNIIIAHGFDDFIDGSRPCPPRFLANQPGE 90

Query: 115 LNPNYTTWHRLR 126
           +NP+YT W RL+
Sbjct: 91  VNPDYTAWQRLQ 102

[Close]

BLAST of ClCG01G009600 vs. TrEMBL
Match: A5C0U6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039072 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.9e-08
Identity = 41/117 (35.04%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 62  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL-YETIMCPQFLNHAQTQLNPNYTT 121
           P+L Q LS+KL++TN LL K+QLLN ++ANGLE F+  +    P++L+ A  Q+NP +  
Sbjct: 34  PSLSQSLSIKLDETNLLLXKSQLLNXIIANGLEDFIDPDQSSPPKYLDAACXQVNPEFVQ 93

Query: 122 WHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSL 178
           W RL  L++++      S     +  I++   S       S+ +  ++PS+  V SL
Sbjct: 94  WDRLNXLVMSWIYS---SLTPGMVGQIVE--XSTARDIWASLNDEYESPSIATVMSL 145

[Close]

BLAST of ClCG01G009600 vs. NCBI nr
Match: gi|147837613|emb|CAN63649.1| (hypothetical protein VITISV_037657 [Vitis vinifera])

HSP 1 Score: 82.8 bits (203), Expect = 6.8e-13
Identity = 45/132 (34.09%), Postives = 77/132 (58.33%), Query Frame = 1


Query: 62  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMCPQFLNHAQTQLNPNYTTW 121
           P+L Q  +V+L+ +N+LL + Q+LN ++ANGLE  ++  I  P         +NP Y+ W
Sbjct: 23  PSLNQAFTVRLDQSNYLLWRTQMLNIIIANGLEEMIHGKIXAPSRFLGDSENINPEYSIW 82

Query: 122 HRLRMLLINF-----------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPS 181
            R   L++ +            IGE I+ + D + ++L GL +EYN+FV ++ +R +  S
Sbjct: 83  QRQNRLVMCWIYSSLTEDNLLAIGENITEQ-DRILYLLAGLRAEYNSFVITVTSRHEPLS 142

Query: 182 LEDVRSLLLAYE 183
           LE++ S+LL +E
Sbjct: 143 LEEIHSMLLTHE 153

[Close]

BLAST of ClCG01G009600 vs. NCBI nr
Match: gi|566200541|ref|XP_006376191.1| (hypothetical protein POPTR_0013s10690g [Populus trichocarpa])

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 53/166 (31.93%), Postives = 81/166 (48.80%), Query Frame = 1


Query: 55  PFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMCPQF-LNHAQTQ 114
           P H     TLP    VKL+ +N++L ++Q+ N V ANG E F+  T +CP+  L+     
Sbjct: 27  PTHQMLNHTLP----VKLDRSNYVLWRSQIDNVVFANGFEDFIDGTAICPEKELSPGIIG 86

Query: 115 LNPNYTTWHRLR-------------------------MLLINF------------TIGEP 174
            N ++TTW+ L                          + +I++             IGEP
Sbjct: 87  YNTSHTTWNALEKTFSSSSKARIMQLRLELQSTKKGSLSMIDYIMKVKGAADNLAAIGEP 146

Query: 175 ISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYE 183
           +  + D + ++L GL S+YNA VT+I  R D  S+E V S+LLA+E
Sbjct: 147 VLEQ-DQVMNLLGGLGSDYNAVVTAINIRDDKISIEAVHSMLLAFE 187

[Close]

BLAST of ClCG01G009600 vs. NCBI nr
Match: gi|147802354|emb|CAN77126.1| (hypothetical protein VITISV_013628 [Vitis vinifera])

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 46/138 (33.33%), Postives = 68/138 (49.28%), Query Frame = 1


Query: 78  LLGKNQLLNAVMANGLEGFLY-ETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINF----- 137
           L    Q +N    + LE F+  ET +  +FL+ AQ Q+NP +  W R+  L++++     
Sbjct: 11  LTANPQNINPTPISSLEDFIEGETPIPAKFLDDAQLQINPLFIQWERMNRLVMSWIYSSL 70

Query: 138 ----------------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQ 182
                                        +GEP+SYR D L + L+GL+ EY+ FVTSI 
Sbjct: 71  TLAMKIKKEGITISEYLARIKEVFDKYSAMGEPLSYR-DKLMYTLNGLTEEYDGFVTSIY 130

[Close]

BLAST of ClCG01G009600 vs. NCBI nr
Match: gi|703122636|ref|XP_010102622.1| (hypothetical protein L484_010911 [Morus notabilis])

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1


Query: 55  PFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQ 114
           P   T  PT+   LS+KL+D NFLL KNQ+LN ++A+G + F+  +  C P+FL +   +
Sbjct: 31  PSSITTIPTVNPQLSIKLDDDNFLLWKNQMLNIIIAHGFDDFIDGSRPCPPRFLANQPGE 90

Query: 115 LNPNYTTWHRLR 126
           +NP+YT W RL+
Sbjct: 91  VNPDYTAWQRLQ 102

[Close]

BLAST of ClCG01G009600 vs. NCBI nr
Match: gi|147852634|emb|CAN83798.1| (hypothetical protein VITISV_039072 [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 41/117 (35.04%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 62  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL-YETIMCPQFLNHAQTQLNPNYTT 121
           P+L Q LS+KL++TN LL K+QLLN ++ANGLE F+  +    P++L+ A  Q+NP +  
Sbjct: 34  PSLSQSLSIKLDETNLLLXKSQLLNXIIANGLEDFIDPDQSSPPKYLDAACXQVNPEFVQ 93

Query: 122 WHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSL 178
           W RL  L++++      S     +  I++   S       S+ +  ++PS+  V SL
Sbjct: 94  WDRLNXLVMSWIYS---SLTPGMVGQIVE--XSTARDIWASLNDEYESPSIATVMSL 145

The following BLAST results are available for this feature:

BLAST of ClCG01G009600 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BMF5_VITVI	4.8e-13	34.09	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037657 PE=4 SV=1	[more]
U5FS17_POPTR	1.4e-09	31.93	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s10690g PE=4 SV=1	[more]
A5BPS3_VITVI	7.1e-09	33.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013628 PE=4 SV=1	[more]
W9RJ64_9ROSA	7.9e-08	44.44	Uncharacterized protein OS=Morus notabilis GN=L484_010911 PE=4 SV=1	[more]
A5C0U6_VITVI	7.9e-08	35.04	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039072 PE=4 SV=1	[more]

BLAST of ClCG01G009600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147837613\|emb\|CAN63649.1\|	6.8e-13	34.09	hypothetical protein VITISV_037657 [Vitis vinifera]	[more]
gi\|566200541\|ref\|XP_006376191.1\|	2.1e-09	31.93	hypothetical protein POPTR_0013s10690g [Populus trichocarpa]	[more]
gi\|147802354\|emb\|CAN77126.1\|	1.0e-08	33.33	hypothetical protein VITISV_013628 [Vitis vinifera]	[more]
gi\|703122636\|ref\|XP_010102622.1\|	1.1e-07	44.44	hypothetical protein L484_010911 [Morus notabilis]	[more]
gi\|147852634\|emb\|CAN83798.1\|	1.1e-07	35.04	hypothetical protein VITISV_039072 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G009600.1	ClCG01G009600.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G009600	Cucurbita pepo (Zucchini)	cpewcgB028
ClCG01G009600	Cucurbita pepo (Zucchini)	cpewcgB451
ClCG01G009600	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G009600	Cucumber (Gy14) v2	cgybwcgB022
ClCG01G009600	Melon (DHL92) v3.6.1	medwcgB132
ClCG01G009600	Silver-seed gourd	carwcgB0116
ClCG01G009600	Cucumber (Chinese Long) v3	cucwcgB025
ClCG01G009600	Watermelon (97103) v2	wcgwmbB089
ClCG01G009600	Wax gourd	wcgwgoB240
ClCG01G009600	Cucumber (Gy14) v1	cgywcgB570
ClCG01G009600	Cucurbita maxima (Rimu)	cmawcgB186
ClCG01G009600	Cucurbita maxima (Rimu)	cmawcgB342
ClCG01G009600	Cucurbita moschata (Rifu)	cmowcgB177
ClCG01G009600	Cucurbita moschata (Rifu)	cmowcgB340
ClCG01G009600	Wild cucumber (PI 183967)	cpiwcgB026
ClCG01G009600	Cucumber (Chinese Long) v2	cuwcgB023
ClCG01G009600	Melon (DHL92) v3.5.1	mewcgB140
ClCG01G009600	Watermelon (97103) v1	wcgwmB157