ClCG01G009480 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G009480
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 13229181 .. 13229626 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAAAAGCATTACTTAGTTCCCCCAAAGGAAAAACTATGCTTATTGAGACCAATCTTAGTAAATCCTCTGTAAGCGTCCCACAAAGATGCTTTCATGGGAAACCTTAACTAAAAATCCTAAATGGATTTTAGAAAATGCATTTACTCCGCCCAAGAGAGAAAAAGAACTATTTCATATAATAGAACACCCTGATGGAAGGGTAGAAATCAAGTTCGAAGAAGAACCACCTAGGTTTCCAGTTTTAAAAGAAAGCATAAGTTCAAAAGACTTCATGAGCTCAAGACCTAGTACATCAAGTATAAGGCATGAACCTTACCCAAATCCTAATAAAACAAACTTGGTGACAGTAAGTTCGATAAGGTTAGATCACAAAGTCCCAAATCTCCATTATGAAGAAGAAAGGTCATCTTCTCCTACTCAAACAAAAATGGAAACATGA

mRNA sequence

ATGGAAGCAAAAGCATTACTTAGTTCCCCCAAAGGAAAAACTATGCTTATTGAGACCAATCTTAGTAAATCCTCTCGTCCCACAAAGATGCTTTCATGGGAAACCTTAACTAAAAATCCTAAATGGATTTTAGAAAATGCATTTACTCCGCCCAAGAGAGAAAAAGAACTATTTCATATAATAGAACACCCTGATGGAAGGGTAGAAATCAAGTTCGAAGAAGAACCACCTAGGTTTCCAGTTTTAAAAGAAAGCATAAGTTCAAAAGACTTCATGAGCTCAAGACCTAGTACATCAAGTATAAGGCATGAACCTTACCCAAATCCTAATAAAACAAACTTGGTGACAGTAAGTTCGATAAGGTTAGATCACAAAGTCCCAAATCTCCATTATGAAGAAGAAAGGTCATCTTCTCCTACTCAAACAAAAATGGAAACATGA

Coding sequence (CDS)

ATGGAAGCAAAAGCATTACTTAGTTCCCCCAAAGGAAAAACTATGCTTATTGAGACCAATCTTAGTAAATCCTCTCGTCCCACAAAGATGCTTTCATGGGAAACCTTAACTAAAAATCCTAAATGGATTTTAGAAAATGCATTTACTCCGCCCAAGAGAGAAAAAGAACTATTTCATATAATAGAACACCCTGATGGAAGGGTAGAAATCAAGTTCGAAGAAGAACCACCTAGGTTTCCAGTTTTAAAAGAAAGCATAAGTTCAAAAGACTTCATGAGCTCAAGACCTAGTACATCAAGTATAAGGCATGAACCTTACCCAAATCCTAATAAAACAAACTTGGTGACAGTAAGTTCGATAAGGTTAGATCACAAAGTCCCAAATCTCCATTATGAAGAAGAAAGGTCATCTTCTCCTACTCAAACAAAAATGGAAACATGA

Protein sequence

MEAKALLSSPKGKTMLIETNLSKSSRPTKMLSWETLTKNPKWILENAFTPPKREKELFHIIEHPDGRVEIKFEEEPPRFPVLKESISSKDFMSSRPSTSSIRHEPYPNPNKTNLVTVSSIRLDHKVPNLHYEEERSSSPTQTKMET
Homology
[Close]
BLAST of ClCG01G009480 vs. TrEMBL
Match: A0A0D2STQ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G078200 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 47/139 (33.81%), Postives = 67/139 (48.20%), Query Frame = 1 

Query: 1   MEAKALLSSPKGKTMLIETNLSKS-SRPTKMLSWETLTKNPKWILENAFTP----PKREK 60
           +  KALL SPKG+T+LIET  ++S ++  + + W  +    KW L+ A  P    P R  
Sbjct: 5   VNTKALLQSPKGETLLIETGTTRSHTKIPRTIQWHEINLPDKWKLKGATDPVAQTPIRNT 64

Query: 61  ELFHIIEHPDGRVEIKF---EEEPPR--FPVLKESISSK---------------DFMSSR 115
            L  I +H DG VE+KF   +  PPR  F +   S + +               DF ++R
Sbjct: 65  SLSEISQHQDGTVELKFNRPQRMPPRHSFEIRSTSTAFRRLNIEEESNPETQTVDFRTAR 124

[Close]
BLAST of ClCG01G009480 vs. TrEMBL
Match: A0A0D2QTR8_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_003G1484001 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-06
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 1 

Query: 1  MEAKALLSSPKGKTMLIETNLSKS-SRPTKMLSWETLTKNPKWILENAFTP----PKREK 60
          +  KALL SPKG+T+LIET+ ++S +   + + W  +    KW LE A  P    P R  
Sbjct: 4  VNTKALLQSPKGETLLIETDTTRSHTTIPRTIQWHEINLPDKWKLEGATDPVAPTPIRNT 63

Query: 61 ELFHIIEHPDGRVEIKFEEEPPRFP 81
           L  I +H DG VE+KF   P R P
Sbjct: 64 SLSEISQHQDGTVELKF-NRPQRMP 87

[Close]
BLAST of ClCG01G009480 vs. TrEMBL
Match: A0A0D2RMY0_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G1694002 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-06
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 1 

Query: 1   MEAKALLSSPKGKTMLIETNLSKS-SRPTKMLSWETLTKNPKWILENAFTP----PKREK 60
           +  KALL SPKG+T+LIET+ ++S +   + + W  +    KW LE A  P    P R  
Sbjct: 214 VNTKALLQSPKGETLLIETDTTRSHTTIPRTIQWHEINLPDKWKLEGATDPVAPTPIRNT 273

Query: 61  ELFHIIEHPDGRVEIKFEEEPPRFP 81
            L  I +H DG VE+KF   P R P
Sbjct: 274 SLSEISQHQDGTVELKF-NRPQRMP 297

[Close]
BLAST of ClCG01G009480 vs. TrEMBL
Match: A0A0D2SRS0_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_010G1258002 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.7e-06
Identity = 51/167 (30.54%), Postives = 74/167 (44.31%), Query Frame = 1 

Query: 1   MEAKALLSSPKGKTMLIETNLSK-SSRPTKMLSWETLTKNPKWILENAFTP----PKREK 60
           +  KALL SPKG+T+LIET+ ++  +   + + W  +    KW LE A  P    P R  
Sbjct: 99  VNTKALLQSPKGETLLIETDTTRYHTTIPRTIQWHEINLPDKWKLEGATDPVAPTPIRNT 158

Query: 61  ELFHIIEHPDGRVEIKF---EEEPPR--FPVLKESISSK---------------DFMSSR 120
            L  I +H D  VE+KF   +  PPR  F +   S + K               DF ++R
Sbjct: 159 SLSEISQHQDDTVELKFNRPQRMPPRHSFKIGSTSTAFKRLNIEEESNPETQTVDFRTAR 218

Query: 121 PSTSSIRHEPYPNPNKTNLVTVSSIRLDHKVPNLHYEEERSSSPTQT 143
            S SSI     P   +TNL  + +     +      EE   +SP  +
Sbjct: 219 ASVSSI-----PTTFRTNLQEIDNSSNIAQPIYARQEESPQNSPNMS 260

[Close]
BLAST of ClCG01G009480 vs. NCBI nr
Match: gi|763767465|gb|KJB34680.1| (hypothetical protein B456_006G078200 [Gossypium raimondii])

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 47/139 (33.81%), Postives = 67/139 (48.20%), Query Frame = 1 

Query: 1   MEAKALLSSPKGKTMLIETNLSKS-SRPTKMLSWETLTKNPKWILENAFTP----PKREK 60
           +  KALL SPKG+T+LIET  ++S ++  + + W  +    KW L+ A  P    P R  
Sbjct: 5   VNTKALLQSPKGETLLIETGTTRSHTKIPRTIQWHEINLPDKWKLKGATDPVAQTPIRNT 64

Query: 61  ELFHIIEHPDGRVEIKF---EEEPPR--FPVLKESISSK---------------DFMSSR 115
            L  I +H DG VE+KF   +  PPR  F +   S + +               DF ++R
Sbjct: 65  SLSEISQHQDGTVELKFNRPQRMPPRHSFEIRSTSTAFRRLNIEEESNPETQTVDFRTAR 124

[Close]
BLAST of ClCG01G009480 vs. NCBI nr
Match: gi|763763702|gb|KJB30956.1| (hypothetical protein B456_005G1694002, partial [Gossypium raimondii])

HSP 1 Score: 59.3 bits (142), Expect = 6.4e-06
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 1 

Query: 1   MEAKALLSSPKGKTMLIETNLSKS-SRPTKMLSWETLTKNPKWILENAFTP----PKREK 60
           +  KALL SPKG+T+LIET+ ++S +   + + W  +    KW LE A  P    P R  
Sbjct: 214 VNTKALLQSPKGETLLIETDTTRSHTTIPRTIQWHEINLPDKWKLEGATDPVAPTPIRNT 273

Query: 61  ELFHIIEHPDGRVEIKFEEEPPRFP 81
            L  I +H DG VE+KF   P R P
Sbjct: 274 SLSEISQHQDGTVELKF-NRPQRMP 297

[Close]
BLAST of ClCG01G009480 vs. NCBI nr
Match: gi|763753053|gb|KJB20441.1| (hypothetical protein B456_003G1484001, partial [Gossypium raimondii])

HSP 1 Score: 59.3 bits (142), Expect = 6.4e-06
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 1 

Query: 1  MEAKALLSSPKGKTMLIETNLSKS-SRPTKMLSWETLTKNPKWILENAFTP----PKREK 60
          +  KALL SPKG+T+LIET+ ++S +   + + W  +    KW LE A  P    P R  
Sbjct: 4  VNTKALLQSPKGETLLIETDTTRSHTTIPRTIQWHEINLPDKWKLEGATDPVAPTPIRNT 63

Query: 61 ELFHIIEHPDGRVEIKFEEEPPRFP 81
           L  I +H DG VE+KF   P R P
Sbjct: 64 SLSEISQHQDGTVELKF-NRPQRMP 87

The following BLAST results are available for this feature:
BLAST of ClCG01G009480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2STQ6_GOSRA1.5e-0633.81Uncharacterized protein OS=Gossypium raimondii GN=B456_006G078200 PE=4 SV=1[more]
A0A0D2QTR8_GOSRA4.5e-0641.18Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_003G1484001 PE... [more]
A0A0D2RMY0_GOSRA4.5e-0641.18Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G1694002 PE... [more]
A0A0D2SRS0_GOSRA7.7e-0630.54Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_010G1258002 PE... [more]
BLAST of ClCG01G009480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|763767465|gb|KJB34680.1|2.2e-0633.81hypothetical protein B456_006G078200 [Gossypium raimondii][more]
gi|763763702|gb|KJB30956.1|6.4e-0641.18hypothetical protein B456_005G1694002, partial [Gossypium raimondii][more]
gi|763753053|gb|KJB20441.1|6.4e-0641.18hypothetical protein B456_003G1484001, partial [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G009480.1ClCG01G009480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G009480Cucurbita maxima (Rimu)cmawcgB186
ClCG01G009480Cucurbita maxima (Rimu)cmawcgB342
ClCG01G009480Cucurbita moschata (Rifu)cmowcgB177
ClCG01G009480Cucurbita moschata (Rifu)cmowcgB340
ClCG01G009480Wild cucumber (PI 183967)cpiwcgB026
ClCG01G009480Cucumber (Chinese Long) v2cuwcgB023
ClCG01G009480Melon (DHL92) v3.5.1mewcgB140
ClCG01G009480Watermelon (97103) v1wcgwmB157
ClCG01G009480Cucurbita pepo (Zucchini)cpewcgB028
ClCG01G009480Cucurbita pepo (Zucchini)cpewcgB451
ClCG01G009480Bottle gourd (USVL1VR-Ls)lsiwcgB169
ClCG01G009480Cucumber (Gy14) v2cgybwcgB022
ClCG01G009480Melon (DHL92) v3.6.1medwcgB132
ClCG01G009480Silver-seed gourdcarwcgB0116
ClCG01G009480Silver-seed gourdcarwcgB0933
ClCG01G009480Cucumber (Chinese Long) v3cucwcgB025
ClCG01G009480Watermelon (97103) v2wcgwmbB089
ClCG01G009480Wax gourdwcgwgoB240
ClCG01G009480Cucumber (Gy14) v1cgywcgB039