ClCG01G009180 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G009180
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	DNA-directed RNA polymerase II subunit E
Location	CG_Chr01 : 11793762 .. 11796278 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTATGAGCGCCACAGCGAGAGGACGTAAACGAAAATACATGGTTCTGAAACGAAGATTTCTTTCTCCCGAGTTATCAATTTAACGATAATCTCCTTCTTAATCAGGTTCTTTCGATACTTTTTCCTCTTAGAAATTAGTACCACTCTCTCTTGTTGATATTTCTTTGATGAATGTGCATTTTCCCCCTTCTAGTAAGAGCGAATCGATACCCTTTGGAATGATTTATATGTAAATCACGAATGTTTGCATTTCGGGAAATTGATTTGTCTCAACTCGATGTCTATGTCGAGTATTCGTTATTTGATATTCCCATATGCTGTAGGATTAACCGAGTTGAGGGAAATGTTGATAGATTTTATCTTTCTTTTTCGTTTTGTTTTTCCCTCTTCTCCTCTGTTTTTGGTTTGGGAATTGAGTTTTATACTCTTCTGTGTGCATCTTGCTTAGAATGATGATTGAGTAGCGAATTTCTTGAAATCAGATTACGGCTGAAAGATATGGTGTTGTCGGAGGAGGAAATCACCAAACTCTTTAGAGTCCGGAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTACTTTGTTGGAGACTTCGAGCTTGATATGTCAAGAGAACAATTTAAGAAGAAGTTCGGTGAGAGCATGAAAAGAGAAGATCTTGTTATCAATAAATCCATGAGAAATAATAGCTCTGACCAGGTATAGTCTCATACTATACAATGATAATATCATTTATTTAGGCTGCTTTTGATTACTATTTACTTTTTCGTTTTTTAGTTTCTGAAAATTGTGTTTGTTGTTATTATCCAAAAAAAAAGAAAATTGTGTTTGTTGTTTCCCAACTTAATTACCATGATTTTCATTTTCTTAGGTAAACATTTGAATTGTTAGCAAGTTCTAACAACAAAAAAATAAGTTTTTAAAAACTACTTTTCTTTAGTTTTCAAAATTTTATTTAGATTTTGAAAACTCGCAATTAGTTGTGTATTTGAACATGTTTAAACTTTACCTTGTTAAAATGTTGCTGCAAAATTTCCTCAGGAGAAGTTTCTATATGAGTCATTCTCATGTACTTTGACATGAAAAATACTTAACCATCGATCATTGAGTAGTATATAATATTATTTGATAAATTTTTCCAAAACTTTTATGAAGTTTGGTTACAGGGATGTACAGGTTATTTGTTAACCTTTTTATTTATTCCCCTCCTTTTATTTATGACTCTTTTACACAGATATATATTTTCTTTCCTGAAGAGCCGAAGGTTGGTATCAAGACATTGGATACTTATAAAAAACGTATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTTGTTCAACAGAATTTGACCCCCTTTGCTCGTACTTCTATAGGCGAAATATCTTCTAAAGTCCATTTGGAGGTTTTCCAGGTAAAAGTTAAATCTGTAAATAGTTTCTGGAGTCTTTTAATGTCGGATAGAATACAGTAATATTATCATATGCTACAAATTTGATGAGAAATAGAGAGGATGGAAAGAGCCATTTGGTGTCGCTTGCAAATGACTGATCAAATATAATTTATAATACTGAAGTCTACTACTACTACAAGGGCATAGCAATAGTGACAAGCCTGGGTTAAAGAATGGTAATGTTAGTTTGTAATTACTTATGTGATTTCCATTGTCCACATAATTATGCCTACATTCTTATTTTACTAAAGTTAATGTTACCTCTTTGTCACTTTTTGATGCAGGAAGCAGAATTGATGGTTAACATTAAAAATCACGTTCTCATTCCCGAGCACCAGTCCCTGACAAATGAAGAGAAGAAGACGTTGTTGGAGAGGTATACGGTGAAAGAAACACAAGTGAGTTTCATCTTTTTTTCTTGAAATACACGAACATTGTGAGAATTTATCTTTCATAAACATGTTGAAATAACCTTTGTAGATTGGCCCGTGGTGGATAAGGGCTATGTAAATAATGTGGGTTTTAGGGAATAAGTTTAAGCAATGATGATCACCTACCTAAGATTTAATATCCTACAAGTTACATTGACAATCAAATATCGTAGGGTTAGGCAGTTGTTTCATTTGAATAGTCGAGATGTGCACAAGTTGGGTTTGACACTCTTGGATACATATTTAAATGTGTTTCTGTTAGTTCCTAAAGTGATTTTGTATTTTTTCTCAGCTACCTCGCATACAGGTTACCGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTGAAGATCATCCGACCAAGCGAAACTGCAGGAAGATATGTGACTTATAGATACGTTGTTTGAGGTCTATCTGATTACAGCAATTGAAGTCATGGTACTTGCCTACTTGGAAGTGTGGAAGTGGTTTTTGAGATTTTGGCAATTCTCCTGTATGAGCTCAAACTTGGGAATTTTTGTATTTAGAATATAGATAGAACATCCTTAAGTGGTTTCTATATTCCTTCATTCACTCACAAGCATGTTTATTGAGGCTTCTGGTGACGAAGAAAGTCGAT

mRNA sequence

ATTTTATGAGCGCCACAGCGAGAGGACGTAAACGAAAATACATGGTTCTGAAACGAAGATTTCTTTCTCCCGAGTTATCAATTTAACGATAATCTCCTTCTTAATCAGATTACGGCTGAAAGATATGGTGTTGTCGGAGGAGGAAATCACCAAACTCTTTAGAGTCCGGAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTACTTTGTTGGAGACTTCGAGCTTGATATGTCAAGAGAACAATTTAAGAAGAAGTTCGGTGAGAGCATGAAAAGAGAAGATCTTGTTATCAATAAATCCATGAGAAATAATAGCTCTGACCAGATATATATTTTCTTTCCTGAAGAGCCGAAGGTTGGTATCAAGACATTGGATACTTATAAAAAACGTATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTTGTTCAACAGAATTTGACCCCCTTTGCTCGTACTTCTATAGGCGAAATATCTTCTAAAGTCCATTTGGAGGTTTTCCAGGAAGCAGAATTGATGGTTAACATTAAAAATCACGTTCTCATTCCCGAGCACCAGTCCCTGACAAATGAAGAGAAGAAGACGTTGTTGGAGAGGTATACGGTGAAAGAAACACAACTACCTCGCATACAGGTTACCGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTGAAGATCATCCGACCAAGCGAAACTGCAGGAAGATATGTGACTTATAGATACGTTGTTTGAGGTCTATCTGATTACAGCAATTGAAGTCATGGTACTTGCCTACTTGGAAGTGTGGAAGTGGTTTTTGAGATTTTGGCAATTCTCCTGTATGAGCTCAAACTTGGGAATTTTTGTATTTAGAATATAGATAGAACATCCTTAAGTGGTTTCTATATTCCTTCATTCACTCACAAGCATGTTTATTGAGGCTTCTGGTGACGAAGAAAGTCGAT

Coding sequence (CDS)

ATGGTGTTGTCGGAGGAGGAAATCACCAAACTCTTTAGAGTCCGGAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTACTTTGTTGGAGACTTCGAGCTTGATATGTCAAGAGAACAATTTAAGAAGAAGTTCGGTGAGAGCATGAAAAGAGAAGATCTTGTTATCAATAAATCCATGAGAAATAATAGCTCTGACCAGATATATATTTTCTTTCCTGAAGAGCCGAAGGTTGGTATCAAGACATTGGATACTTATAAAAAACGTATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTTGTTCAACAGAATTTGACCCCCTTTGCTCGTACTTCTATAGGCGAAATATCTTCTAAAGTCCATTTGGAGGTTTTCCAGGAAGCAGAATTGATGGTTAACATTAAAAATCACGTTCTCATTCCCGAGCACCAGTCCCTGACAAATGAAGAGAAGAAGACGTTGTTGGAGAGGTATACGGTGAAAGAAACACAACTACCTCGCATACAGGTTACCGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTGAAGATCATCCGACCAAGCGAAACTGCAGGAAGATATGTGACTTATAGATACGTTGTTTGA

Protein sequence

MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV

Homology

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BLAST of ClCG01G009180 vs. Swiss-Prot
Match: RPB5A_ARATH (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 1.6e-87
Identity = 157/205 (76.59%), Postives = 183/205 (89.27%), Query Frame = 1


Query: 2   VLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMR 61
           +L+EEE+ +L+R++KT++QML+DRGYF+ D EL M+++QF +K G++MKREDLV  K+ R
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKV 121
           N++SDQ+YIFFP+E KVG+KT+  Y  RMKSENVFRAILVVQQNLTPFART I EISSK 
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 122 HLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGL 181
           HLEVFQEAE++VNIK HVL+PEHQ LT EEKKTLLERYTVKETQLPRIQVTDPIARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 182 KRGQVVKIIRPSETAGRYVTYRYVV 207
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of ClCG01G009180 vs. Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-57
Identity = 108/206 (52.43%), Postives = 150/206 (72.82%), Query Frame = 1


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESM-----KREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD + E+FK +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  MRNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISS 124
             ++ +DQ+++FFPEEPKVGIKT+  Y +RM+ EN+ RA++VVQQ +TP A+ S+ +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KVHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYY 184
           K  LE F + EL++NI  H L+PEH  +T EE   LL RY ++E+QLPRIQ  DP+ARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of ClCG01G009180 vs. Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-57
Identity = 108/206 (52.43%), Postives = 150/206 (72.82%), Query Frame = 1


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESM-----KREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD + E+FK +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  MRNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISS 124
             ++ +DQ+++FFPEEPKVGIKT+  Y +RM+ EN+ RA++VVQQ +TP A+ S+ +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KVHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYY 184
           K  LE F + EL++NI  H L+PEH  +T EE   LL RY ++E+QLPRIQ  DP+ARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of ClCG01G009180 vs. Swiss-Prot
Match: RPAB1_CAEBR (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.7e-57
Identity = 115/211 (54.50%), Postives = 149/211 (70.62%), Query Frame = 1


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMK-----REDLV 60
           M   E E  +L+R+RKTVLQM+ DRGY V   ELD   E FK+ FG+        R DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60

Query: 61  INKSMRNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIG 120
           I  +  ++ +DQ+++FFPE+ K+GIKT+    ++M+ +N+ RAI+VVQ  +TP A+ SIG
Sbjct: 61  ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 121 EISSKVHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPI 180
           +++ K  LE F EAELMVNI  H L+PEH  +T EEK  LL RY +K++QLPRIQ  DP+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV 180

Query: 181 ARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 207
           ARY+GL+RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 181 ARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211

[Close]

BLAST of ClCG01G009180 vs. Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.9e-57
Identity = 107/206 (51.94%), Postives = 149/206 (72.33%), Query Frame = 1


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESM-----KREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD + E+F+ +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  MRNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISS 124
             ++ +DQ+++FFPEEPKVGIKT+  Y +RM+ EN+ RA++VVQQ +TP A+ S+ +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KVHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYY 184
           K  LE F + EL++NI  H L+PEH  +T EE   LL RY ++E QLPRIQ  DP+ARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

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BLAST of ClCG01G009180 vs. TrEMBL
Match: V4UJN2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009504mg PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.1e-93
Identity = 172/206 (83.50%), Postives = 193/206 (93.69%), Query Frame = 1


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           M LS+EEI +LFR+R+TV+QML+DRGYFVGDFE++MS+EQF  KFGE+MKREDLVINK++
Sbjct: 1   MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60

Query: 61  RNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSK 120
           RN+SSDQIY+FFP+E KVG+KT+ TY  RMKSENVFRAILVVQQNLTPFART I EIS+K
Sbjct: 61  RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120

Query: 121 VHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180
            HLEVFQEAEL+VNIK HVL+PEHQ LTNEEKKTLL+RYTVKETQLPRIQVTDPIARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of ClCG01G009180 vs. TrEMBL
Match: A0A0A0K8L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374590 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.4e-93
Identity = 175/207 (84.54%), Postives = 192/207 (92.75%), Query Frame = 1


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVLSEEEIT+LFR+RKTV QML+DRGYFVGDFE+DM+REQFK+K+GE+MKRED+VINKS 
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSK 120
           RN+SSDQIY+FFPEE KVGIK L TY  RMKSENVFRAILVVQQNLTPFAR  + E +SK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 -VHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYY 180
             HLEVFQEAEL+VNIK+HVL+PEHQ L NEEKKTLLERYTVKETQLPRIQVTDP+ARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of ClCG01G009180 vs. TrEMBL
Match: A0A0D2PK01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G007200 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 4.0e-93
Identity = 171/206 (83.01%), Postives = 190/206 (92.23%), Query Frame = 1


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVLS++EI +LFR+RKTVLQ+LKDR YFVGDFE++MSREQF  KFGE+MKREDLVINK+ 
Sbjct: 1   MVLSDDEIRRLFRIRKTVLQLLKDRDYFVGDFEINMSREQFISKFGENMKREDLVINKAK 60

Query: 61  RNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSK 120
           RN+SSDQIY+FFPEEPKVG+KT+ TY  RMKSENVFRAILVVQQNLTPFART I EISSK
Sbjct: 61  RNDSSDQIYVFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISSK 120

Query: 121 VHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180
            HLEVFQE EL+VN+K H L+PEHQ LT EEKKTLL+RYTVKETQLPRIQV+DPIARYYG
Sbjct: 121 FHLEVFQETELLVNVKEHSLVPEHQVLTTEEKKTLLQRYTVKETQLPRIQVSDPIARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRY+TYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYVV 206

[Close]

BLAST of ClCG01G009180 vs. TrEMBL
Match: A0A0A0KF69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G170410 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 5.2e-93
Identity = 177/207 (85.51%), Postives = 189/207 (91.30%), Query Frame = 1


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MV  EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMS+ QFK KFGE+MKREDLVINKS 
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEI-SS 120
           RNNSSDQIY+FFPEEPKVGIK ++TY  RMKSENVFRAI VVQ NLTPFAR  I E+ SS
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120

Query: 121 KVHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYY 180
           K+HLEVFQE EL+VNIK HVLIPEHQ+LT+EEKKTLL RYTVKETQLPR+QVTDPI+RYY
Sbjct: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of ClCG01G009180 vs. TrEMBL
Match: A0A0B0PQS6_GOSAR (Dna-directed rna polymerases i, ii, and iii subunit rpabc1 OS=Gossypium arboreum GN=F383_00256 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 5.2e-93
Identity = 170/206 (82.52%), Postives = 190/206 (92.23%), Query Frame = 1


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVLS++EI +LFR+RKTVLQ+LKDR YFVGDFE++MSREQF  KFGE+MKREDL+INK+ 
Sbjct: 1   MVLSDDEIRRLFRIRKTVLQLLKDRDYFVGDFEINMSREQFISKFGENMKREDLIINKAK 60

Query: 61  RNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSK 120
           RN+SSDQIY+FFPEEPKVG+KT+ TY  RMKSENVFRAILVVQQNLTPFART I EISSK
Sbjct: 61  RNDSSDQIYVFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISSK 120

Query: 121 VHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180
            HLEVFQE EL+VN+K H L+PEHQ LT EEKKTLL+RYTVKETQLPRIQV+DPIARYYG
Sbjct: 121 FHLEVFQETELLVNVKEHSLVPEHQVLTTEEKKTLLQRYTVKETQLPRIQVSDPIARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRY+TYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYVV 206

[Close]

BLAST of ClCG01G009180 vs. TAIR10
Match: AT3G22320.1 (AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 323.6 bits (828), Expect = 9.1e-89
Identity = 157/205 (76.59%), Postives = 183/205 (89.27%), Query Frame = 1


Query: 2   VLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMR 61
           +L+EEE+ +L+R++KT++QML+DRGYF+ D EL M+++QF +K G++MKREDLV  K+ R
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKV 121
           N++SDQ+YIFFP+E KVG+KT+  Y  RMKSENVFRAILVVQQNLTPFART I EISSK 
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 122 HLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGL 181
           HLEVFQEAE++VNIK HVL+PEHQ LT EEKKTLLERYTVKETQLPRIQVTDPIARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 182 KRGQVVKIIRPSETAGRYVTYRYVV 207
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of ClCG01G009180 vs. TAIR10
Match: AT5G57980.1 (AT5G57980.1 RNA polymerase II fifth largest subunit, C)

HSP 1 Score: 188.3 bits (477), Expect = 4.6e-48
Identity = 95/206 (46.12%), Postives = 143/206 (69.42%), Query Frame = 1


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKR---EDLVINKSMR 64
           ++EIT++F+VR+TVLQML+DRGY + + +L++ RE+F ++F ++M +   E L ++ +  
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NNSSDQIYIFFPEEPKVGIKTLDTYKK-RMKSENVFRAILVVQQNLTPFARTSIGEISSK 124
            N +D+IY+F+PE PKVG+  +      +M+ + V R I+VV   +T  AR ++ E++  
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124

Query: 125 VHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 184
           + +EVF+EAEL+ NI  H L+ ++  L ++ KK LL  YTV++TQLPRI VTDP+ARYYG
Sbjct: 125 LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYG 184

Query: 185 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKI R   T+  Y TYR+ V
Sbjct: 185 LKRGQVVKIRRSDATSLDYYTYRFAV 210

[Close]

BLAST of ClCG01G009180 vs. TAIR10
Match: AT2G41340.1 (AT2G41340.1 RNA polymerase II fifth largest subunit, D)

HSP 1 Score: 135.6 bits (340), Expect = 3.5e-32
Identity = 77/203 (37.93%), Postives = 123/203 (60.59%), Query Frame = 1


Query: 4   SEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNN 63
           S  E  K +  R+T ++ML+DRGY V D ++++S +QF+  +GE    + L I+   R +
Sbjct: 17  SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76

Query: 64  SSDQIYIFFPEEPKVGIKTLDTYKKRMKS-ENVFRAILVVQQNLTPFARTSIGEISSKVH 123
           SS +I + F     V +  +      + S EN+   ILV+Q ++T  A  ++   S KV 
Sbjct: 77  SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKV- 136

Query: 124 LEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLK 183
            E+F+  +L+VN+  HVL P+HQ L ++EK++LL++++++E QLPR+   DPI RYYGL+
Sbjct: 137 -ELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLE 196

Query: 184 RGQVVKIIRPSETAGRYVTYRYV 206
            GQV+K+    E +  +VTYR V
Sbjct: 197 TGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of ClCG01G009180 vs. TAIR10
Match: AT3G57080.1 (AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-30
Identity = 79/204 (38.73%), Postives = 119/204 (58.33%), Query Frame = 1


Query: 3   LSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRN 62
           LS EE  + +  R+  LQML+DRGY V D ++++S   F+  +GE    + L I+   R+
Sbjct: 20  LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79

Query: 63  NSSDQIYIFFPEEPKVGIKTLDTYKKRMKS-ENVFRAILVVQQNLTPFARTSIGEISSKV 122
           +S+ ++ I F     V +  + +    + S E +   ILV+Q ++T  A  +I   S KV
Sbjct: 80  DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKV 139

Query: 123 HLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGL 182
             E+FQ  +L+VNI  H L P+HQ L +EEK TLL++++++E QLPRI   D I RYYGL
Sbjct: 140 --EIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGL 199

Query: 183 KRGQVVKIIRPSETAGRYVTYRYV 206
           ++GQVVK+    E    +V +R V
Sbjct: 200 EKGQVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of ClCG01G009180 vs. TAIR10
Match: AT3G54490.1 (AT3G54490.1 RNA polymerase II fifth largest subunit, E)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-26
Identity = 67/201 (33.33%), Postives = 108/201 (53.73%), Query Frame = 1


Query: 7   EITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSMRNNSSD 66
           E  + +  R T  +ML+DRGY V + EL ++  +F+  FGE  + E L I   +R++   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYIFFPEEPKVGIKTLDTYKKRMKSENVFRA-ILVVQQNLTPFARTSIGEISSKVHLEV 126
           +I + F     + +K++     ++ +     A ILV+Q  +  FA+ ++      V  E 
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFPFTV--ET 154

Query: 127 FQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQ 186
           F   +L+VNI  H+  P+ + L  EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ Q
Sbjct: 155 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQ 214

Query: 187 VVKIIRPSETAGRYVTYRYVV 207
           VVKI    E  G +VTYR ++
Sbjct: 215 VVKITYSKEPVGDFVTYRCII 233

[Close]

BLAST of ClCG01G009180 vs. NCBI nr
Match: gi|659112918|ref|XP_008456369.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo])

HSP 1 Score: 357.1 bits (915), Expect = 2.1e-95
Identity = 183/207 (88.41%), Postives = 191/207 (92.27%), Query Frame = 1


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MV  EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMS+ QFK KFGE+MKREDLVINKS 
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISS- 120
           RNNSSDQIY+FFPEEPKVGIK ++TY  RMKSENVFRAI VVQ NLTPFAR  I E+SS 
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KVHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYY 180
           KVHLEVFQEAELMVNIK HVLIPEHQSLT+EEKKTLL RYTVKETQLPR+QVTDPIARYY
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of ClCG01G009180 vs. NCBI nr
Match: gi|659100689|ref|XP_008451219.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 5.2e-94
Identity = 176/207 (85.02%), Postives = 193/207 (93.24%), Query Frame = 1


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVLSEEEIT+LFR+RKTV QML+DRGYFVGDFE+DM+REQFK+K+GE+MKRED+VINKS 
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSK 120
           RN+SSDQIY+FFPEE KVGIK L TY  RMKSENVFRAILVVQQNLTPFAR  + E +SK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 -VHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYY 180
             HLEVFQEAEL+VNIK+HVL+PEHQ LTNEEKKTLLERYTVKETQLPRIQVTDP+ARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of ClCG01G009180 vs. NCBI nr
Match: gi|743939608|ref|XP_011014255.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Populus euphratica])

HSP 1 Score: 351.3 bits (900), Expect = 1.2e-93
Identity = 171/206 (83.01%), Postives = 191/206 (92.72%), Query Frame = 1


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           M L+EEEI +LFR+RKTV+QMLKDRGYFVGDFE+ M+REQF+ K+G +MKREDLVINK+ 
Sbjct: 1   MTLTEEEIKRLFRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60

Query: 61  RNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSK 120
           RN+SSDQIY+FFPEE KVG+KT+ TY  RMKSENVFRAILVVQQNLTPFART I EIS+K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 121 VHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180
            HLEVFQEAEL+VNIK HVL+PEHQ L+NEEKKTLLERYTVKETQLPRIQ+TDPIARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYV+
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVI 206

[Close]

BLAST of ClCG01G009180 vs. NCBI nr
Match: gi|567918418|ref|XP_006451215.1| (hypothetical protein CICLE_v10009504mg [Citrus clementina])

HSP 1 Score: 350.9 bits (899), Expect = 1.5e-93
Identity = 172/206 (83.50%), Postives = 193/206 (93.69%), Query Frame = 1


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           M LS+EEI +LFR+R+TV+QML+DRGYFVGDFE++MS+EQF  KFGE+MKREDLVINK++
Sbjct: 1   MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60

Query: 61  RNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSK 120
           RN+SSDQIY+FFP+E KVG+KT+ TY  RMKSENVFRAILVVQQNLTPFART I EIS+K
Sbjct: 61  RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120

Query: 121 VHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180
            HLEVFQEAEL+VNIK HVL+PEHQ LTNEEKKTLL+RYTVKETQLPRIQVTDPIARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of ClCG01G009180 vs. NCBI nr
Match: gi|449462431|ref|XP_004148944.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis sativus])

HSP 1 Score: 350.5 bits (898), Expect = 2.0e-93
Identity = 175/207 (84.54%), Postives = 192/207 (92.75%), Query Frame = 1


Query: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSREQFKKKFGESMKREDLVINKSM 60
           MVLSEEEIT+LFR+RKTV QML+DRGYFVGDFE+DM+REQFK+K+GE+MKRED+VINKS 
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSK 120
           RN+SSDQIY+FFPEE KVGIK L TY  RMKSENVFRAILVVQQNLTPFAR  + E +SK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 -VHLEVFQEAELMVNIKNHVLIPEHQSLTNEEKKTLLERYTVKETQLPRIQVTDPIARYY 180
             HLEVFQEAEL+VNIK+HVL+PEHQ L NEEKKTLLERYTVKETQLPRIQVTDP+ARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

The following BLAST results are available for this feature:

BLAST of ClCG01G009180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPB5A_ARATH	1.6e-87	76.59	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRP...	[more]
RPAB1_RAT	1.3e-57	52.43	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]
RPAB1_MOUSE	1.3e-57	52.43	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Po...	[more]
RPAB1_CAEBR	1.7e-57	54.50	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]
RPAB1_PONAB	3.9e-57	51.94	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=PO...	[more]

BLAST of ClCG01G009180 vs. TrEMBL


Match Name	E-value	Identity	Description
V4UJN2_9ROSI	1.1e-93	83.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009504mg PE=3 SV=1	[more]
A0A0A0K8L9_CUCSA	1.4e-93	84.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374590 PE=3 SV=1	[more]
A0A0D2PK01_GOSRA	4.0e-93	83.01	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G007200 PE=3 SV=1	[more]
A0A0A0KF69_CUCSA	5.2e-93	85.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G170410 PE=3 SV=1	[more]
A0A0B0PQS6_GOSAR	5.2e-93	82.52	Dna-directed rna polymerases i, ii, and iii subunit rpabc1 OS=Gossypium arboreum...	[more]

BLAST of ClCG01G009180 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22320.1	9.1e-89	76.59	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	4.6e-48	46.12	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	3.5e-32	37.93	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	1.1e-30	38.73	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	2.9e-26	33.33	RNA polymerase II fifth largest subunit, E	[more]

BLAST of ClCG01G009180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112918\|ref\|XP_008456369.1\|	2.1e-95	88.41	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cu...	[more]
gi\|659100689\|ref\|XP_008451219.1\|	5.2e-94	85.02	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo]	[more]
gi\|743939608\|ref\|XP_011014255.1\|	1.2e-93	83.01	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Populus euphratica...	[more]
gi\|567918418\|ref\|XP_006451215.1\|	1.5e-93	83.50	hypothetical protein CICLE_v10009504mg [Citrus clementina]	[more]
gi\|449462431\|ref\|XP_004148944.1\|	2.0e-93	84.54	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis sativ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000783	RNA_pol_subH/Rpb5_C
IPR005571	RNA_pol_Rpb5_N
IPR014381	DNA_RNA_pol_RPB5_euk/virus
IPR020609	RpoH/RPB5

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051604	protein maturation
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0000418	DNA-directed RNA polymerase IV complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005634	nucleus
cellular_component	GO:0055029	nuclear DNA-directed RNA polymerase complex
cellular_component	GO:0044451	nucleoplasm part
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G009180.1	ClCG01G009180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PRODOM	PD005155		coord: 140..205 score: 8.0
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	GENE3D	G3DSA:3.90.940.20		coord: 134..206 score: 1.3
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 133..205 score: 1.4
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	unknown	SSF55287	RPB5-like RNA polymerase subunit	coord: 131..206 score: 2.49
IPR005571	RNA polymerase, Rpb5, N-terminal	GENE3D	G3DSA:3.40.1340.10		coord: 4..133 score: 5.2
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 5..90 score: 5.9
IPR005571	RNA polymerase, Rpb5, N-terminal	unknown	SSF53036	Eukaryotic RPB5 N-terminal domain	coord: 5..134 score: 3.92
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIR	PIRSF000747	RPB5	coord: 1..206 score: 9.4
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 133..206 score: 22
None	No IPR available	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 4..206 score: 3.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G009180	MELO3C021758	Melon (DHL92) v3.5.1	mewcgB134
ClCG01G009180	Cla97C01G009620	Watermelon (97103) v2	wcgwmbB090
ClCG01G009180	Bhi08G000738	Wax gourd	wcgwgoB236
ClCG01G009180	Lsi02G010460	Bottle gourd (USVL1VR-Ls)	lsiwcgB177

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G009180	Cucumber (Chinese Long) v3	cucwcgB020
ClCG01G009180	Cucumber (Chinese Long) v3	cucwcgB025
ClCG01G009180	Watermelon (97103) v2	wcgwmbB089
ClCG01G009180	Wax gourd	wcgwgoB240
ClCG01G009180	Cucumber (Gy14) v1	cgywcgB414
ClCG01G009180	Cucumber (Gy14) v1	cgywcgB415
ClCG01G009180	Cucurbita maxima (Rimu)	cmawcgB184
ClCG01G009180	Cucurbita maxima (Rimu)	cmawcgB186
ClCG01G009180	Cucurbita maxima (Rimu)	cmawcgB342
ClCG01G009180	Cucurbita moschata (Rifu)	cmowcgB174
ClCG01G009180	Cucurbita moschata (Rifu)	cmowcgB177
ClCG01G009180	Cucurbita moschata (Rifu)	cmowcgB340
ClCG01G009180	Wild cucumber (PI 183967)	cpiwcgB021
ClCG01G009180	Wild cucumber (PI 183967)	cpiwcgB026
ClCG01G009180	Cucumber (Chinese Long) v2	cuwcgB018
ClCG01G009180	Cucumber (Chinese Long) v2	cuwcgB023
ClCG01G009180	Melon (DHL92) v3.5.1	mewcgB140
ClCG01G009180	Watermelon (97103) v1	wcgwmB151
ClCG01G009180	Cucurbita pepo (Zucchini)	cpewcgB028
ClCG01G009180	Cucurbita pepo (Zucchini)	cpewcgB458
ClCG01G009180	Cucurbita pepo (Zucchini)	cpewcgB451
ClCG01G009180	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G009180	Cucumber (Gy14) v2	cgybwcgB017
ClCG01G009180	Cucumber (Gy14) v2	cgybwcgB022
ClCG01G009180	Melon (DHL92) v3.6.1	medwcgB130
ClCG01G009180	Melon (DHL92) v3.6.1	medwcgB132
ClCG01G009180	Silver-seed gourd	carwcgB0390
ClCG01G009180	Silver-seed gourd	carwcgB0439