ClCG01G007970 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G007970
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 9121664 .. 9122229 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAAATCGCAACCACTCGCCTCGAAACCATCACGTCTTCTCCGGTTTTGATGTGCTTTACGGTTACGCCATCGGATGGAAGAATCGACTGTAGTTTCTTCCTCCAGGTTTCATCGTTGTTGAAATGTCCGTTCTCTAGGGCGTTCTTCAGCGATTTCTCGGAAATTTTGAGGTGATCGATGAGTTCTGAATCGGAGTAGTGGAAAAGAAGATCGTCATGAATCAGTGACTGCCGAGGGACGATACAGAACAAATGAATCAATCTCTCCGCCGCTTCACCGACATGGCCACGAACAACATCACGGCCGGTGGAAGGATCAAAAATGGCGAGATTGACATAGGAATTGGAATAAGCCGAGTGGAATAGGCCGCACAAACAAACCGGTTCTTGCGCTTTCCAGATTTTGAGAATACGGTAGATATCAACGAGATGATCGAGGAAGGTGCCGTGCTTGTGCCAGCACTCTCCGGCGCCGACGGATCGGAGAACGGAGATAAGAGATGGAAGGTTCGCGTTTACCTTTTCAAGATCGCCGCGGAGGAAGGGACGAACAGACGCTAG

mRNA sequence

ATGAGGAAAATCGCAACCACTCGCCTCGAAACCATCACGTCTTCTCCGGTTTTGATGTGCTTTACGGTTACGCCATCGGATGGAAGAATCGACTGTAGTTTCTTCCTCCAGGTTTCATCGTTGTTGAAATGTCCGTTCTCTAGGGCGTTCTTCAGCGATTTCTCGGAAATTTTGAGGGACGATACAGAACAAATGAATCAATCTCTCCGCCGCTTCACCGACATGGCCACGAACAACATCACGGCCGGTGGAAGGATCAAAAATGGCGAGATTGACATAGGAATTGGAATAAGCCGAGCCGCACAAACAAACCGGTTCTTGCGCTTTCCAGATTTTGAGAATACGGTAGATATCAACGAGATGATCGAGGAAGGTGCCGTGCTTGTGCCAGCACTCTCCGGCGCCGACGGATCGGAGAACGGAGATAAGAGATGGAAGGTTCGCGTTTACCTTTTCAAGATCGCCGCGGAGGAAGGGACGAACAGACGCTAG

Coding sequence (CDS)

ATGAGGAAAATCGCAACCACTCGCCTCGAAACCATCACGTCTTCTCCGGTTTTGATGTGCTTTACGGTTACGCCATCGGATGGAAGAATCGACTGTAGTTTCTTCCTCCAGGTTTCATCGTTGTTGAAATGTCCGTTCTCTAGGGCGTTCTTCAGCGATTTCTCGGAAATTTTGAGGGACGATACAGAACAAATGAATCAATCTCTCCGCCGCTTCACCGACATGGCCACGAACAACATCACGGCCGGTGGAAGGATCAAAAATGGCGAGATTGACATAGGAATTGGAATAAGCCGAGCCGCACAAACAAACCGGTTCTTGCGCTTTCCAGATTTTGAGAATACGGTAGATATCAACGAGATGATCGAGGAAGGTGCCGTGCTTGTGCCAGCACTCTCCGGCGCCGACGGATCGGAGAACGGAGATAAGAGATGGAAGGTTCGCGTTTACCTTTTCAAGATCGCCGCGGAGGAAGGGACGAACAGACGCTAG

Protein sequence

MRKIATTRLETITSSPVLMCFTVTPSDGRIDCSFFLQVSSLLKCPFSRAFFSDFSEILRDDTEQMNQSLRRFTDMATNNITAGGRIKNGEIDIGIGISRAAQTNRFLRFPDFENTVDINEMIEEGAVLVPALSGADGSENGDKRWKVRVYLFKIAAEEGTNRR
Homology
[Close]
BLAST of ClCG01G007970 vs. TrEMBL
Match: A0A0E0GF92_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 41/109 (37.61%), Postives = 69/109 (63.30%), Query Frame = 1 

Query: 57  ILRDDTEQMNQSLRRFTDMATNNITAGGRIKNGEIDIGIGIS---RAAQTNRFLRFPDFE 116
           + RDD E+++++L    D   + + A    ++GE+D+G+G+     AA  +     P+ E
Sbjct: 212 VARDDAEEVDEALGGGADDGAHVVAADVGFEDGEVDVGVGVGGVVEAAARDGVGGAPEAE 271

Query: 117 NTVDINEMIEEGAVLVPALSGADGSENGDKRWKVRVYLFKIAAEEGTNR 163
           + VD+ E+ EEGAVLVPAL+GA G+++G +  + RV+L  +AA+EG  R
Sbjct: 272 DAVDVEEVGEEGAVLVPALAGAGGAQHGGQLGERRVHLLLLAAQEGARR 320

[Close]
BLAST of ClCG01G007970 vs. TrEMBL
Match: A0A0E0CTF6_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.2e-11
Identity = 40/109 (36.70%), Postives = 67/109 (61.47%), Query Frame = 1 

Query: 57  ILRDDTEQMNQSLRRFTDMATNNITAGGRIKNGEIDIGIGIS---RAAQTNRFLRFPDFE 116
           + RDD E+++++L    D   + + A    ++GE+D+G+G+     AA  +     P+ E
Sbjct: 64  VARDDAEEVDEALGGGADDGAHVVAADVGFEDGEVDVGVGVGGVVEAAARHGVGGAPEAE 123

Query: 117 NTVDINEMIEEGAVLVPALSGADGSENGDKRWKVRVYLFKIAAEEGTNR 163
           + VD+ E+ EEGAVLVPAL+GA G ++G +  + RV+L  + A+EG  R
Sbjct: 124 DAVDVEEVGEEGAVLVPALAGAGGPQHGGQLGERRVHLLLLTAQEGARR 172

[Close]
BLAST of ClCG01G007970 vs. NCBI nr
Match: gi|297742728|emb|CBI35362.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 66.2 bits (160), Expect = 5.9e-08
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 1 

Query: 4  IATTRLETITSSPVLMCFTVTPSDGRIDCSFFLQVSSLLKCPFSRAFFSDFSEILRDDTE 63
          +ATT L+T TSSPVLMCFTVTPS G  + +FFLQ SS L  P S AF ++ SE LR  T 
Sbjct: 1  MATTLLDTNTSSPVLMCFTVTPSGGTREFTFFLQASSPLTTPPSLAFLTETSEALRCSTS 60

Query: 64 QMNQSLRR 72
            + SL R
Sbjct: 61 --SSSLHR 66

The following BLAST results are available for this feature:
BLAST of ClCG01G007970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0E0GF92_ORYNI1.0e-1137.61Uncharacterized protein OS=Oryza nivara PE=4 SV=1[more]
A0A0E0CTF6_9ORYZ5.2e-1136.70Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1[more]
BLAST of ClCG01G007970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|297742728|emb|CBI35362.3|5.9e-0857.35unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G007970.1ClCG01G007970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G007970Watermelon (97103) v2wcgwmbB089
ClCG01G007970Wax gourdwcgwgoB194
ClCG01G007970Cucumber (Gy14) v1cgywcgB517
ClCG01G007970Cucurbita maxima (Rimu)cmawcgB260
ClCG01G007970Cucurbita maxima (Rimu)cmawcgB634
ClCG01G007970Cucurbita moschata (Rifu)cmowcgB248
ClCG01G007970Cucurbita moschata (Rifu)cmowcgB636
ClCG01G007970Wild cucumber (PI 183967)cpiwcgB602
ClCG01G007970Cucumber (Chinese Long) v2cuwcgB090
ClCG01G007970Melon (DHL92) v3.5.1mewcgB019
ClCG01G007970Watermelon (97103) v1wcgwmB144
ClCG01G007970Cucurbita pepo (Zucchini)cpewcgB166
ClCG01G007970Cucurbita pepo (Zucchini)cpewcgB370
ClCG01G007970Bottle gourd (USVL1VR-Ls)lsiwcgB008
ClCG01G007970Cucumber (Gy14) v2cgybwcgB341
ClCG01G007970Melon (DHL92) v3.6.1medwcgB018
ClCG01G007970Silver-seed gourdcarwcgB0462
ClCG01G007970Silver-seed gourdcarwcgB0800
ClCG01G007970Cucumber (Chinese Long) v3cucwcgB395