ClCG01G007000 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G007000
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Aluminum-activated malate transporter
Location	CG_Chr01 : 8105143 .. 8105490 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACAATGACTGATCCGTCACCCTCATCCCAATTTCATCTAAAAGCTGCCAAATCCGCCATTGATGATTTAAAAGAATCCTTCTTCAAATATGTTGCCACTTCCTCAGTGGCTTCCATATTGTATATAATCGTTAAATCAATGGAAGGATTGTCTGAGGCAGTGGCTGAACTCTCTCTAAAAGCTCATTTCAAGAGTGTTGAACCCAATGTTTCAGTTTCACCAAACAAGCCTCTGTTGCTTCACAATGGAATTGTAAATCCATTGTTTCAAGCTGAAGATGAACAACCCCATGTTGTTATTATAGTGATAGCAACAAAGATTGAGAATTTACCTGAAAAATAA

mRNA sequence

ATGAAGACAATGACTGATCCGTCACCCTCATCCCAATTTCATCTAAAAGCTGCCAAATCCGCCATTGATGATTTAAAAGAATCCTTCTTCAAATATGTTGCCACTTCCTCAGTGGCTTCCATATTGTATATAATCGTTAAATCAATGGAAGGATTGTCTGAGGCAGTGGCTGAACTCTCTCTAAAAGCTCATTTCAAGAGTGTTGAACCCAATGTTTCAGTTTCACCAAACAAGCCTCTGTTGCTTCACAATGGAATTGTAAATCCATTGTTTCAAGCTGAAGATGAACAACCCCATGTTGTTATTATAGTGATAGCAACAAAGATTGAGAATTTACCTGAAAAATAA

Coding sequence (CDS)

ATGAAGACAATGACTGATCCGTCACCCTCATCCCAATTTCATCTAAAAGCTGCCAAATCCGCCATTGATGATTTAAAAGAATCCTTCTTCAAATATGTTGCCACTTCCTCAGTGGCTTCCATATTGTATATAATCGTTAAATCAATGGAAGGATTGTCTGAGGCAGTGGCTGAACTCTCTCTAAAAGCTCATTTCAAGAGTGTTGAACCCAATGTTTCAGTTTCACCAAACAAGCCTCTGTTGCTTCACAATGGAATTGTAAATCCATTGTTTCAAGCTGAAGATGAACAACCCCATGTTGTTATTATAGTGATAGCAACAAAGATTGAGAATTTACCTGAAAAATAA

Protein sequence

MKTMTDPSPSSQFHLKAAKSAIDDLKESFFKYVATSSVASILYIIVKSMEGLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAEDEQPHVVIIVIATKIENLPEK

Homology

[Close]

BLAST of ClCG01G007000 vs. TrEMBL
Match: A0A0A0LES6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G781620 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.8e-19
Identity = 66/130 (50.77%), Postives = 78/130 (60.00%), Query Frame = 1


Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKESF--------------FKYVATSSVASILYIIV 60
           MK MTDPSPSSQ HL AAKSA++DLK +                  +  ++VASIL  IV
Sbjct: 24  MKKMTDPSPSSQLHLNAAKSAVNDLKNTLKSGTTQISDDISNLLAIIPDATVASILIDIV 83

Query: 61  KSMEGLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAED-----EQPHVV 112
           KS+E LSEAVAELSLKA FK       VSP KP LLH G + P  + +D     +QPHVV
Sbjct: 84  KSVEDLSEAVAELSLKAKFK------RVSPEKPQLLHKGTIKPFVEEDDNVEAQQQPHVV 143

[Close]

BLAST of ClCG01G007000 vs. TrEMBL
Match: A0A0A0KF38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476700 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-13
Identity = 57/124 (45.97%), Postives = 72/124 (58.06%), Query Frame = 1


Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKES----------FFKYVATSSVASILYIIVKSME 60
           +K MT+PS SS+ H++ AK+AIDDLK +              +  ++V  IL  IVKS+E
Sbjct: 347 IKAMTNPSSSSKTHIENAKAAIDDLKHTLKSGYLESSDLLGIIPDATVCCILIDIVKSVE 406

Query: 61  GLSEAVAELSLKAHFKSVEPNVSVSPNK-PLLLHNGIVNPLFQAE--DEQPHVVIIVIAT 112
            +SEA  EL   A FKSVE   +VSP K   LLH GIVNP+F +E  D   HVVI V   
Sbjct: 407 KISEATDELGRSARFKSVE--ATVSPEKSSQLLHRGIVNPVFDSECGDGDDHVVIRVDNN 466

[Close]

BLAST of ClCG01G007000 vs. TrEMBL
Match: A0A061EVN2_THECC (Aluminum activated malate transporter family protein OS=Theobroma cacao GN=TCM_022947 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 56/115 (48.70%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLK----------ESFFKYVATSSVASILYIIVKSME 60
           MKTMTDPS S+  H++ +K+A+ DLK          E F   V  ++VASIL  IVKS+E
Sbjct: 351 MKTMTDPS-STNPHVENSKAAMKDLKFALKAASLEDEDFLAIVPAATVASILVEIVKSVE 410

Query: 61  GLSEAVAELSLKAHFKSVEPNVSVSPNKP-LLLHNGIVNPLFQAEDEQPHVVIIV 105
            +SEA  ELS  A FK VEP  +VSP KP  LLH GI+ P+  A D   +VVI +
Sbjct: 411 KISEAANELSQLARFKKVEP--TVSPEKPQQLLHRGIIQPVLDA-DSNDNVVIAI 461

[Close]

BLAST of ClCG01G007000 vs. TrEMBL
Match: A0A151S164_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_029704 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-12
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 1


Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKESF----------FKYVATSSVASILYIIVKSME 60
           +KTMTDPS  ++ H++ +K+A++DLK +              V  ++VASIL  I KS+E
Sbjct: 350 IKTMTDPS-GAKSHIENSKTAVEDLKVALEMVSLDDTELLAIVPVATVASILEEITKSVE 409

Query: 61  GLSEAVAELSLKAHFKSV-EPNVSVSPNKPLLLHNGIVNPLFQAEDEQPHVVIIVIATKI 116
            + E+V+ELS  AHF+SV EPN  VSP KP LLH GI+ P+   ++   HV I +     
Sbjct: 410 KIYESVSELSELAHFQSVIEPN--VSPEKPTLLHRGIIKPVVDIDNTVDHVEITIPEITT 469

[Close]

BLAST of ClCG01G007000 vs. TrEMBL
Match: B9H9B1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s21960g PE=4 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-12
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 1


Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLK-----------ESFFKYVATSSVASILYIIVKSM 60
           +KTMT PS S+  H++ +K+A+ DLK           +     +  ++VASIL  IV  +
Sbjct: 349 IKTMTFPS-SANVHVENSKTAVKDLKISLKAVSLEHDQELLAILPDATVASILVEIVICV 408

Query: 61  EGLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAEDEQPHVVIIVIATKI 112
           E +SE+V ELS  AHFKSVEP  +VSP KP LLH G +NP+ + + +  HVVI +  T  
Sbjct: 409 EKISESVHELSNLAHFKSVEP--TVSPEKPQLLHRGAINPVLEGDSD--HVVITIHETST 465

[Close]

BLAST of ClCG01G007000 vs. TAIR10
Match: AT3G11680.1 (AT3G11680.1 Aluminium activated malate transporter family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 37/121 (30.58%), Postives = 58/121 (47.93%), Query Frame = 1


Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLK-----------ESFFKYVATSSVASILYIIVKSM 60
           +KTM + S     H+  +K AI +LK           +   + +   ++ASIL  +V  +
Sbjct: 343 IKTMRNDSACVNAHIDNSKKAIKNLKIALKSSYPETYKDLLEIIPGVTMASILIEVVNCV 402

Query: 61  EGLSEAVAELSLKAHFK-SVEPNVSVSPNKPLLLHNGIVNPLFQAEDEQP-----HVVII 105
           E + EAV E S  AHFK +++  +S    +  LLH G V P+   ++E+      HV+I 
Sbjct: 403 EKIYEAVEEFSGLAHFKETLDSKLSAEIGQHQLLHRGCVKPVLDGDNEKEDNSSCHVLIT 462

[Close]

BLAST of ClCG01G007000 vs. NCBI nr
Match: gi|659084497|ref|XP_008442919.1| (PREDICTED: aluminum-activated malate transporter 8-like [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 3.6e-20
Identity = 68/129 (52.71%), Postives = 80/129 (62.02%), Query Frame = 1


Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKESF--------------FKYVATSSVASILYIIV 60
           MKTMTDPSPSSQ HL AAKSA++DLK +                  +  ++VASIL  IV
Sbjct: 330 MKTMTDPSPSSQLHLNAAKSAVNDLKNTLKSGTAQISDDISNLLAIIPDATVASILIDIV 389

Query: 61  KSMEGLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAED----EQPHVVI 112
           KS+E LSEAVAELSLKA FK      SVSP KP LLH G + P  + +D    +QPHVVI
Sbjct: 390 KSVEDLSEAVAELSLKAKFK------SVSPEKPQLLHKGTIKPFVEEDDNEAQQQPHVVI 449

[Close]

BLAST of ClCG01G007000 vs. NCBI nr
Match: gi|778688865|ref|XP_011652856.1| (PREDICTED: aluminum-activated malate transporter 8-like [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 6.8e-19
Identity = 66/130 (50.77%), Postives = 78/130 (60.00%), Query Frame = 1


Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKESF--------------FKYVATSSVASILYIIV 60
           MK MTDPSPSSQ HL AAKSA++DLK +                  +  ++VASIL  IV
Sbjct: 295 MKKMTDPSPSSQLHLNAAKSAVNDLKNTLKSGTTQISDDISNLLAIIPDATVASILIDIV 354

Query: 61  KSMEGLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAED-----EQPHVV 112
           KS+E LSEAVAELSLKA FK       VSP KP LLH G + P  + +D     +QPHVV
Sbjct: 355 KSVEDLSEAVAELSLKAKFK------RVSPEKPQLLHKGTIKPFVEEDDNVEAQQQPHVV 414

[Close]

BLAST of ClCG01G007000 vs. NCBI nr
Match: gi|700204079|gb|KGN59212.1| (hypothetical protein Csa_3G781620 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 6.8e-19
Identity = 66/130 (50.77%), Postives = 78/130 (60.00%), Query Frame = 1


Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKESF--------------FKYVATSSVASILYIIV 60
           MK MTDPSPSSQ HL AAKSA++DLK +                  +  ++VASIL  IV
Sbjct: 24  MKKMTDPSPSSQLHLNAAKSAVNDLKNTLKSGTTQISDDISNLLAIIPDATVASILIDIV 83

Query: 61  KSMEGLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAED-----EQPHVV 112
           KS+E LSEAVAELSLKA FK       VSP KP LLH G + P  + +D     +QPHVV
Sbjct: 84  KSVEDLSEAVAELSLKAKFK------RVSPEKPQLLHKGTIKPFVEEDDNVEAQQQPHVV 143

[Close]

BLAST of ClCG01G007000 vs. NCBI nr
Match: gi|449451295|ref|XP_004143397.1| (PREDICTED: aluminum-activated malate transporter 8 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 4.3e-13
Identity = 57/124 (45.97%), Postives = 72/124 (58.06%), Query Frame = 1


Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKES----------FFKYVATSSVASILYIIVKSME 60
           +K MT+PS SS+ H++ AK+AIDDLK +              +  ++V  IL  IVKS+E
Sbjct: 347 IKAMTNPSSSSKTHIENAKAAIDDLKHTLKSGYLESSDLLGIIPDATVCCILIDIVKSVE 406

Query: 61  GLSEAVAELSLKAHFKSVEPNVSVSPNK-PLLLHNGIVNPLFQAE--DEQPHVVIIVIAT 112
            +SEA  EL   A FKSVE   +VSP K   LLH GIVNP+F +E  D   HVVI V   
Sbjct: 407 KISEATDELGRSARFKSVE--ATVSPEKSSQLLHRGIVNPVFDSECGDGDDHVVIRVDNN 466

[Close]

BLAST of ClCG01G007000 vs. NCBI nr
Match: gi|590632908|ref|XP_007027980.1| (Aluminum activated malate transporter family protein [Theobroma cacao])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 56/115 (48.70%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLK----------ESFFKYVATSSVASILYIIVKSME 60
           MKTMTDPS S+  H++ +K+A+ DLK          E F   V  ++VASIL  IVKS+E
Sbjct: 351 MKTMTDPS-STNPHVENSKAAMKDLKFALKAASLEDEDFLAIVPAATVASILVEIVKSVE 410

Query: 61  GLSEAVAELSLKAHFKSVEPNVSVSPNKP-LLLHNGIVNPLFQAEDEQPHVVIIV 105
            +SEA  ELS  A FK VEP  +VSP KP  LLH GI+ P+  A D   +VVI +
Sbjct: 411 KISEAANELSQLARFKKVEP--TVSPEKPQQLLHRGIIQPVLDA-DSNDNVVIAI 461

The following BLAST results are available for this feature:

BLAST of ClCG01G007000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LES6_CUCSA	4.8e-19	50.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G781620 PE=4 SV=1	[more]
A0A0A0KF38_CUCSA	3.0e-13	45.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476700 PE=4 SV=1	[more]
A0A061EVN2_THECC	1.1e-12	48.70	Aluminum activated malate transporter family protein OS=Theobroma cacao GN=TCM_0...	[more]
A0A151S164_CAJCA	2.5e-12	42.06	Uncharacterized protein OS=Cajanus cajan GN=KK1_029704 PE=4 SV=1	[more]
B9H9B1_POPTR	3.3e-12	41.80	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s21960g PE=4 SV=2	[more]

BLAST of ClCG01G007000 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11680.1	1.4e-06	30.58	Aluminium activated malate transporter family protein	[more]

BLAST of ClCG01G007000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084497\|ref\|XP_008442919.1\|	3.6e-20	52.71	PREDICTED: aluminum-activated malate transporter 8-like [Cucumis melo]	[more]
gi\|778688865\|ref\|XP_011652856.1\|	6.8e-19	50.77	PREDICTED: aluminum-activated malate transporter 8-like [Cucumis sativus]	[more]
gi\|700204079\|gb\|KGN59212.1\|	6.8e-19	50.77	hypothetical protein Csa_3G781620 [Cucumis sativus]	[more]
gi\|449451295\|ref\|XP_004143397.1\|	4.3e-13	45.97	PREDICTED: aluminum-activated malate transporter 8 [Cucumis sativus]	[more]
gi\|590632908\|ref\|XP_007027980.1\|	1.6e-12	48.70	Aluminum activated malate transporter family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015743	malate transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009705	plant-type vacuole membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0015140	malate transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G007000.1	ClCG01G007000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31086	FAMILY NOT NAMED	coord: 1..94 score: 3.6
None	No IPR available	PANTHER	PTHR31086:SF3	ALUMINUM-ACTIVATED MALATE TRANSPORTER 8	coord: 1..94 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G007000	Lsi09G007420	Bottle gourd (USVL1VR-Ls)	lsiwcgB008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G007000	Wax gourd	wcgwgoB191
ClCG01G007000	Cucumber (Gy14) v1	cgywcgB641
ClCG01G007000	Cucurbita maxima (Rimu)	cmawcgB260
ClCG01G007000	Cucurbita maxima (Rimu)	cmawcgB634
ClCG01G007000	Cucurbita moschata (Rifu)	cmowcgB248
ClCG01G007000	Cucurbita moschata (Rifu)	cmowcgB636
ClCG01G007000	Wild cucumber (PI 183967)	cpiwcgB380
ClCG01G007000	Cucumber (Chinese Long) v2	cuwcgB365
ClCG01G007000	Melon (DHL92) v3.5.1	mewcgB019
ClCG01G007000	Watermelon (97103) v1	wcgwmB143
ClCG01G007000	Cucurbita pepo (Zucchini)	cpewcgB166
ClCG01G007000	Cucurbita pepo (Zucchini)	cpewcgB370
ClCG01G007000	Cucumber (Gy14) v2	cgybwcgB333
ClCG01G007000	Melon (DHL92) v3.6.1	medwcgB018
ClCG01G007000	Silver-seed gourd	carwcgB0462
ClCG01G007000	Silver-seed gourd	carwcgB0800
ClCG01G007000	Cucumber (Chinese Long) v3	cucwcgB386
ClCG01G007000	Watermelon (97103) v2	wcgwmbB089