ClCG01G005670 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G005670
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Valyl-tRNA synthetase family protein
Location	CG_Chr01 : 6092024 .. 6093112 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCCGACAAGAAGCCAGAAGTGGAAGATCCTGAGAAGAAAAGGTTTATTTTCCCCTACGGTATTTATGTTTGTTGTTATTGTTTACTTTCGGAATAATACGTGTTAGGAGGATGGATTGTGTGCATGGTTTTACCATTTTGACTTACTGTTTAATTTCGTTCTTTCAATTGGTTGTTTGATCATCTAATTGAAAGCAATTTTATTTTTCTTCCCCAACTGCAATGTAACTTATATAAAATGCTCCCCTGTAGTCTTGTTCAATTCTCCTAGTTTTGTTTGTTTATATTCCAAGGAATATACCTTGAAACTATTCTACAGGAATTTATTTTCTCAAGAAACCGAACTTCTTCAAAGTCATTGCATGTTAGTGTGTATTTAGGCTGAGGCAGCTTCAAGAAATTGTTTCTCTTAGCACCTGATAACATTCATTGTTAAGTAGTTTTTATGTCCTATGTTTTTGGAAGACATTTTGTTGACTAATACATCTGTTGTTGGTTGATGAACCTTCACTCGGCAGGCAAGAGAAACAGAATTGAAAAAGAAAAAGGCTTTAGAGAAAGCTTTGAAGCTGCGGGTAATGTTTATCAATCATATTAAGCTTTTCAGTGCAGTTTAAAATCACCAGAAATTTTTCTACTCTCATCATTTGTCTAAATATATAAAATGGCTTGAATTTGTAATTAGAACTCAAGGATTAATGCTATCTTTTCTGATTGCTGCAATTTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATTTATTTATTTATTTATTTATTTATTTATTCCCTTTTGTATCTAGGTGGTATGAGTGGTGGGAAAAATCAGGATTTTTTGTTGCTGATGCTAAAAGCTCCAAGCCGCCATTTGTAGTTGTGAGCTTCTTTCATGAATTTGATGTTTGGTACTTCAAGTTCAGAATATAAGAATGTCCTTTTTCAGTTTTCATGTGATACAGGACACAACTCCAAAAGCCTTTCTGGAACAAAGATCTGCCCCCACATGATACTCCTCCAAACATGAGATGGATTATGAGCAACACCTGCATTCATTAA

mRNA sequence

ATGGAATCCGACAAGAAGCCAGAAGTGGAAGATCCTGAGAAGAAAAGGTGGTATGAGTGGTGGGAAAAATCAGGATTTTTTGTTGCTGATGCTAAAAGCTCCAAGCCGCCATTTGTAGTTGTGAGCTTCTTTCATGAATTTGATGTTTGGACACAACTCCAAAAGCCTTTCTGGAACAAAGATCTGCCCCCACATGATACTCCTCCAAACATGAGATGGATTATGAGCAACACCTGCATTCATTAA

Coding sequence (CDS)

ATGGAATCCGACAAGAAGCCAGAAGTGGAAGATCCTGAGAAGAAAAGGTGGTATGAGTGGTGGGAAAAATCAGGATTTTTTGTTGCTGATGCTAAAAGCTCCAAGCCGCCATTTGTAGTTGTGAGCTTCTTTCATGAATTTGATGTTTGGACACAACTCCAAAAGCCTTTCTGGAACAAAGATCTGCCCCCACATGATACTCCTCCAAACATGAGATGGATTATGAGCAACACCTGCATTCATTAA

Protein sequence

MESDKKPEVEDPEKKRWYEWWEKSGFFVADAKSSKPPFVVVSFFHEFDVWTQLQKPFWNKDLPPHDTPPNMRWIMSNTCIH

Homology

[Close]

BLAST of ClCG01G005670 vs. Swiss-Prot
Match: SYVM1_ARATH (Valine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana GN=TWN2 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-06
Identity = 21/28 (75.00%), Postives = 21/28 (75.00%), Query Frame = 1


Query: 14  KKRWYEWWEKSGFFVADAKSSKPPFVVV 42
           +K WY WWEKS  F ADAKSSKPPFV+V
Sbjct: 146 EKSWYAWWEKSDLFKADAKSSKPPFVIV 173

[Close]

BLAST of ClCG01G005670 vs. TrEMBL
Match: A0A0A0KPW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174580 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.6e-07
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1


Query: 14  KKRWYEWWEKSGFFVADAKSSKPPFVVV 42
           +K WYEWWEKSG+FVADAKSSKPPFV+V
Sbjct: 76  EKSWYEWWEKSGYFVADAKSSKPPFVIV 103

[Close]

BLAST of ClCG01G005670 vs. TrEMBL
Match: M5X7F9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026682mg PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-06
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 1


Query: 14  KKRWYEWWEKSGFFVADAKSSKPPFVVV 42
           +K WYEWWEK+GFFVADA SSKPPFV+V
Sbjct: 90  EKSWYEWWEKTGFFVADANSSKPPFVIV 117

[Close]

BLAST of ClCG01G005670 vs. TrEMBL
Match: A0A151U9X6_CAJCA (Valyl-tRNA synthetase OS=Cajanus cajan GN=KK1_020304 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-06
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 1


Query: 14  KKRWYEWWEKSGFFVADAKSSKPPFVVV 42
           +K WYEWWEKS FFVADA SSKPPFV+V
Sbjct: 101 EKSWYEWWEKSSFFVADANSSKPPFVIV 128

[Close]

BLAST of ClCG01G005670 vs. TrEMBL
Match: S8CS77_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_07052 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.5e-06
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 1


Query: 14  KKRWYEWWEKSGFFVADAKSSKPPFVVV 42
           +K WYEWWEKS FFVADA SSKPPFV+V
Sbjct: 94  EKSWYEWWEKSNFFVADADSSKPPFVIV 121

[Close]

BLAST of ClCG01G005670 vs. TrEMBL
Match: M5Y468_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000691mg PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.5e-06
Identity = 29/57 (50.88%), Postives = 32/57 (56.14%), Query Frame = 1


Query: 2   ESDKKPEVEDPEKKR-----------------WYEWWEKSGFFVADAKSSKPPFVVV 42
           E+ K PE    EKKR                 WYEWWEK GFF+ADA SSKPPFV+V
Sbjct: 63  ENAKDPETPFGEKKRMAGQMTKIYYPRAVEKSWYEWWEKMGFFLADANSSKPPFVIV 119

[Close]

BLAST of ClCG01G005670 vs. TAIR10
Match: AT1G14610.1 (AT1G14610.1 valyl-tRNA synthetase / valine--tRNA ligase (VALRS))

HSP 1 Score: 52.4 bits (124), Expect = 1.5e-07
Identity = 21/28 (75.00%), Postives = 21/28 (75.00%), Query Frame = 1


Query: 14  KKRWYEWWEKSGFFVADAKSSKPPFVVV 42
           +K WY WWEKS  F ADAKSSKPPFV+V
Sbjct: 146 EKSWYAWWEKSDLFKADAKSSKPPFVIV 173

[Close]

BLAST of ClCG01G005670 vs. NCBI nr
Match: gi|657969580|ref|XP_008376514.1| (PREDICTED: valine--tRNA ligase-like [Malus domestica])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1


Query: 14  KKRWYEWWEKSGFFVADAKSSKPPFVVV 42
           +K WYEWWEK+GFFVADAKSSKPPFV+V
Sbjct: 148 EKSWYEWWEKTGFFVADAKSSKPPFVIV 175

[Close]

BLAST of ClCG01G005670 vs. NCBI nr
Match: gi|449451751|ref|XP_004143624.1| (PREDICTED: valine--tRNA ligase [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1


Query: 14  KKRWYEWWEKSGFFVADAKSSKPPFVVV 42
           +K WYEWWEKSG+FVADAKSSKPPFV+V
Sbjct: 95  EKSWYEWWEKSGYFVADAKSSKPPFVIV 122

[Close]

BLAST of ClCG01G005670 vs. NCBI nr
Match: gi|449451751|ref|XP_004143624.1| (PREDICTED: valine--tRNA ligase [Cucumis sativus])

HSP 1 Score: 30.0 bits (66), Expect = 2.3e+03
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 1


Query: 1  MESDKKPEVEDPEKKR 17
          ME  KKPE+EDPEKK+
Sbjct: 1  MEPGKKPEMEDPEKKK 16

HSP 2 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1


Query: 14  KKRWYEWWEKSGFFVADAKSSKPPFVVV 42
           +K WYEWWEKSG+FVADAKSSKPPFV+V
Sbjct: 76  EKSWYEWWEKSGYFVADAKSSKPPFVIV 103

[Close]

BLAST of ClCG01G005670 vs. NCBI nr
Match: gi|659073011|ref|XP_008467213.1| (PREDICTED: valine--tRNA ligase [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1


Query: 14  KKRWYEWWEKSGFFVADAKSSKPPFVVV 42
           +K WYEWWEKSG+FVADAKSSKPPFV+V
Sbjct: 95  EKSWYEWWEKSGYFVADAKSSKPPFVIV 122

[Close]

BLAST of ClCG01G005670 vs. NCBI nr
Match: gi|659073011|ref|XP_008467213.1| (PREDICTED: valine--tRNA ligase [Cucumis melo])

HSP 1 Score: 32.7 bits (73), Expect = 3.6e+02
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 1


Query: 1  MESDKKPEVEDPEKKR 17
          ME DKKPE+EDPEKK+
Sbjct: 1  MEPDKKPEMEDPEKKK 16

HSP 2 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1


Query: 14  KKRWYEWWEKSGFFVADAKSSKPPFVVV 42
           +K WYEWWEK+GFFVADAKSSKPPFV+V
Sbjct: 147 EKSWYEWWEKTGFFVADAKSSKPPFVIV 174

The following BLAST results are available for this feature:

BLAST of ClCG01G005670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SYVM1_ARATH	2.7e-06	75.00	Valine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana GN=TWN2 PE=2 SV=2	[more]

BLAST of ClCG01G005670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPW4_CUCSA	8.6e-07	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174580 PE=3 SV=1	[more]
M5X7F9_PRUPE	3.3e-06	82.14	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026682mg PE=3 S...	[more]
A0A151U9X6_CAJCA	7.3e-06	82.14	Valyl-tRNA synthetase OS=Cajanus cajan GN=KK1_020304 PE=3 SV=1	[more]
S8CS77_9LAMI	9.5e-06	82.14	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_07052 PE=3 SV=1	[more]
M5Y468_PRUPE	9.5e-06	50.88	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000691mg PE=3 SV=1	[more]

BLAST of ClCG01G005670 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14610.1	1.5e-07	75.00	valyl-tRNA synthetase / valine--tRNA ligase (VALRS)	[more]

BLAST of ClCG01G005670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|657969580\|ref\|XP_008376514.1\|	1.2e-06	85.71	PREDICTED: valine--tRNA ligase-like [Malus domestica]	[more]
gi\|449451751\|ref\|XP_004143624.1\|	1.2e-06	85.71	PREDICTED: valine--tRNA ligase [Cucumis sativus]	[more]
gi\|449451751\|ref\|XP_004143624.1\|	2.3e+03	75.00	PREDICTED: valine--tRNA ligase [Cucumis sativus]	[more]
gi\|659073011\|ref\|XP_008467213.1\|	1.2e-06	85.71	PREDICTED: valine--tRNA ligase [Cucumis melo]	[more]
gi\|659073011\|ref\|XP_008467213.1\|	3.6e+02	81.25	PREDICTED: valine--tRNA ligase [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0006438	valyl-tRNA aminoacylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0002161	aminoacyl-tRNA editing activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004832	valine-tRNA ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G005670.1	ClCG01G005670.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G005670	Carg08430	Silver-seed gourd	carwcgB0688

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G005670	Silver-seed gourd	carwcgB0716
ClCG01G005670	Cucumber (Chinese Long) v3	cucwcgB385
ClCG01G005670	Watermelon (97103) v2	wcgwmbB089
ClCG01G005670	Wax gourd	wcgwgoB191
ClCG01G005670	Cucumber (Gy14) v1	cgywcgB289
ClCG01G005670	Cucurbita maxima (Rimu)	cmawcgB256
ClCG01G005670	Cucurbita maxima (Rimu)	cmawcgB519
ClCG01G005670	Cucurbita moschata (Rifu)	cmowcgB244
ClCG01G005670	Cucurbita moschata (Rifu)	cmowcgB517
ClCG01G005670	Wild cucumber (PI 183967)	cpiwcgB379
ClCG01G005670	Cucumber (Chinese Long) v2	cuwcgB364
ClCG01G005670	Cucumber (Chinese Long) v2	cuwcgB376
ClCG01G005670	Melon (DHL92) v3.5.1	mewcgB019
ClCG01G005670	Melon (DHL92) v3.5.1	mewcgB052
ClCG01G005670	Watermelon (97103) v1	wcgwmB145
ClCG01G005670	Cucurbita pepo (Zucchini)	cpewcgB168
ClCG01G005670	Cucurbita pepo (Zucchini)	cpewcgB640
ClCG01G005670	Bottle gourd (USVL1VR-Ls)	lsiwcgB008
ClCG01G005670	Cucumber (Gy14) v2	cgybwcgB332
ClCG01G005670	Melon (DHL92) v3.6.1	medwcgB017
ClCG01G005670	Melon (DHL92) v3.6.1	medwcgB051