ClCG01G005610 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G005610
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionF-box family protein, putative, expressed
LocationCG_Chr01 : 6001574 .. 6003447 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGCAATTATATGCTTCATCTTCTTCCGTCTCCAACCCCAAACAAAATCCAATTCCCATTCTCCCTCCCTTAGGGTTTCATTGCCATCTCTTGCTTCTCACCAAAAGGTACGTTGCTTTCTTTCTTCCCCCATTTCTTCATTCCACCCTTTAACTCAATTTTCCCTATTCCCTTTCTAAGATGTGCCTTTACACCTTAATTTGTTGTTCCTCTTCAAGATGATTGCATTTTCTTTCAAAAGATGTTATTTTGCTCAGTGGGATTATCTTTGATTTGCATAATTGATGTTGGAGGGGGAGGGGGTTGATTCTTCTGTTTGTGATTAATTGATGTATAATAGGAAAAACATTTTGCATATTTTTTTATTTTGTTGATGTAGTAGGATTTATTCCTACTATTTGTTCTTGATTGAGTTTGCAATTTTGGATGAAGGCTTCGGCGTAATTGGCCACGGGTGAAATGAATAGTAGCTGGGATTTCTTACAATGGCTTGGCGCAGATTTGTCCTTCAAGATCTTCTCTCAATTGGATGATCCATCTGACCTTGTACGCGTTTGCTTAGTCACAAGTTCTTGGCGTCAGTTCGGTAAGCACTTACTATGTGTTGAATACTTTCTTCCAGTTCTTAACTAAATTATTGGTTGTCCATATGATTTTCCTGCAAATTGGTGTGATGAGCTTTTAAATAGATCCAAACACCTTACTTATATGTACAGTATAGCAGATTTTCTTTGGTTGTTTTGGCAATGGGGGAGTTATATTGAACAATATGTACTGTTTAGGCACCTGTTTATAGGCTCCTAGAGCAGAGGTTGTAAAGTGATACTCTTCCTTGGAGGAAATTTTTTCGTAGGGAACACCCAAATGTTGAAATTGCTTGATCACATGGTTAAAACCGGTACTACATGTCGGGAGATATGTTTGGTGATAATATATTTATGGTTCCTGCAATCAGATAGTGCTCTCTGATTTGAAATAATTAAGTTAACATTCATGAGGATATGTAAGCTTGTCATGGGACTCTTCTTAATGCACTTATTGCATCTAACCTAACTATCAAACTATGGAAAGTACGTTGTGATCCTAGAATCTATAGCATCCAGTTAGCAACATGTAAGATTTGTTTGATTTCAAAATGGTTTCTTTCTTGTTTCTGAATGTTCTGTTAATGTTTTGCAGTTATTGAGAATAGCCTCAGCAAACAGCTCTGCTTGAGATTGTTTCCTGATTTATCTGGTGCTCCCCATTTTATTGAAGTGAAGGGCATGATTGATACTTCAACAGTTGGGTCTAGCAACATTACGACATGGGAATCCTTGCAGAGGTTCCATAGAATTTATTTGCTCCTAGCTAAAAGTCTTAACCCTGTCGCTAGAAAAGATTGCATTGCAGTGGCCATTGGTGCATCCTCCACTGATAACAATCCTATAGAAAGCATTGAAAACACACTGGAACCTGGTGATAGGTTTCACAATCGAGCGTCGTATTGGTCCAGTTTAGGTTCAAGAGATCCTGATGTTCCTGAGACCTTAACTTATGGGTTGGTCTCCAACCTATGTGTTGTTTCTGAAATTCATATACAACCATTCCTAGGTTTATCCCAACTCTGCTCTATGAATAATTACACGCATACTTTCGGACTTGAACATCTCTTAACTAACTGATAATCATGCCTGCATCAGCATATTTTCAGGATGGCTTCCCTATATATTCATCAAAGGCTGTTCGATTTAAGATGGGGCATCAAAAGGTTTCTGTAAACTCGAGTACAAACATTTCAAATGGTTCAGCTGTTGACTATAATTCAGAAAGTGATGATAATTTTATCTGGACTTATGTCTCGCCAGAATTTCCAATGGCCCATGTAAGTTGA

mRNA sequence

GGAGCAATTATATGCTTCATCTTCTTCCGTCTCCAACCCCAAACAAAATCCAATTCCCATTCTCCCTCCCTTAGGGTTTCATTGCCATCTCTTGCTTCTCACCAAAAGGCTTCGGCGTAATTGGCCACGGGTGAAATGAATAGTAGCTGGGATTTCTTACAATGGCTTGGCGCAGATTTGTCCTTCAAGATCTTCTCTCAATTGGATGATCCATCTGACCTTGTACGCGTTTGCTTAGTCACAAGTTCTTGGCGTCAGTTCGTTATTGAGAATAGCCTCAGCAAACAGCTCTGCTTGAGATTGTTTCCTGATTTATCTGGTGCTCCCCATTTTATTGAAGTGAAGGGCATGATTGATACTTCAACAGTTGGGTCTAGCAACATTACGACATGGGAATCCTTGCAGAGGTTCCATAGAATTTATTTGCTCCTAGCTAAAAGTCTTAACCCTGTCGCTAGAAAAGATTGCATTGCAGTGGCCATTGGTGCATCCTCCACTGATAACAATCCTATAGAAAGCATTGAAAACACACTGGAACCTGGTGATAGGTTTCACAATCGAGCGTCGTATTGGTCCAGTTTAGGTTCAAGAGATCCTGATGTTCCTGAGACCTTAACTTATGGGTTGGTCTCCAACCTATGTGTTGTTTCTGAAATTCATATACAACCATTCCTAGCATATTTTCAGGATGGCTTCCCTATATATTCATCAAAGGCTGTTCGATTTAAGATGGGGCATCAAAAGGTTTCTGTAAACTCGAGTACAAACATTTCAAATGGTTCAGCTGTTGACTATAATTCAGAAAGTGATGATAATTTTATCTGGACTTATGTCTCGCCAGAATTTCCAATGGCCCATGTAAGTTGA

Coding sequence (CDS)

ATGAATAGTAGCTGGGATTTCTTACAATGGCTTGGCGCAGATTTGTCCTTCAAGATCTTCTCTCAATTGGATGATCCATCTGACCTTGTACGCGTTTGCTTAGTCACAAGTTCTTGGCGTCAGTTCGTTATTGAGAATAGCCTCAGCAAACAGCTCTGCTTGAGATTGTTTCCTGATTTATCTGGTGCTCCCCATTTTATTGAAGTGAAGGGCATGATTGATACTTCAACAGTTGGGTCTAGCAACATTACGACATGGGAATCCTTGCAGAGGTTCCATAGAATTTATTTGCTCCTAGCTAAAAGTCTTAACCCTGTCGCTAGAAAAGATTGCATTGCAGTGGCCATTGGTGCATCCTCCACTGATAACAATCCTATAGAAAGCATTGAAAACACACTGGAACCTGGTGATAGGTTTCACAATCGAGCGTCGTATTGGTCCAGTTTAGGTTCAAGAGATCCTGATGTTCCTGAGACCTTAACTTATGGGTTGGTCTCCAACCTATGTGTTGTTTCTGAAATTCATATACAACCATTCCTAGCATATTTTCAGGATGGCTTCCCTATATATTCATCAAAGGCTGTTCGATTTAAGATGGGGCATCAAAAGGTTTCTGTAAACTCGAGTACAAACATTTCAAATGGTTCAGCTGTTGACTATAATTCAGAAAGTGATGATAATTTTATCTGGACTTATGTCTCGCCAGAATTTCCAATGGCCCATGTAAGTTGA

Protein sequence

MNSSWDFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDLSGAPHFIEVKGMIDTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASSTDNNPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFLAYFQDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPMAHVS
Homology
[Close]
BLAST of ClCG01G005610 vs. Swiss-Prot
Match: FB345_ARATH (F-box protein At4g00755 OS=Arabidopsis thaliana GN=At4g00755 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.0e-53
Identity = 112/237 (47.26%), Postives = 141/237 (59.49%), Query Frame = 1 

Query: 6   DFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDLSGAPH 65
           DF+  L  D S  I S LDDPSD+VR   V+ SWRQFV++ SLSK LCL+LF  LS   H
Sbjct: 2   DFVNNLDTDTSLSILSCLDDPSDIVRASAVSRSWRQFVVKYSLSKNLCLKLFHQLSNVDH 61

Query: 66  FIEVKGMI--DTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASSTDN 125
            IE       ++S  GSS++     L++ HR + LLA+       + CIA AI ASSTDN
Sbjct: 62  IIETSNDRNGESSEAGSSSLMDTRLLEKEHRAFALLARGCMSSPIESCIADAIRASSTDN 121

Query: 126 NPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFLAYF 185
            P+ESI NTLE  DR     SYWSS G     VPE+L Y L+ +LC+++E+ I PF AYF
Sbjct: 122 YPVESILNTLEKRDRIGRTPSYWSSTGQHKTTVPESLLYKLIGDLCLITEVSIHPFQAYF 181

Query: 186 QDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPMA 241
           Q G PIYSS  VRF++GH+K +     N  +       S  + N++WTY S EF MA
Sbjct: 182 QRGHPIYSSHYVRFRLGHEKDNSPHYNNSQDKKGEPGKSSIESNYVWTYTSQEFSMA 238

[Close]
BLAST of ClCG01G005610 vs. TrEMBL
Match: A0A0A0KRU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G173530 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 1.6e-112
Identity = 209/239 (87.45%), Postives = 216/239 (90.38%), Query Frame = 1 

Query: 1   MNSSWDFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60
           MNS  DFLQ LGADLSFKIF+ LDDPSDLV VCLVTSSWRQFVIENSLSKQLCLRLFPDL
Sbjct: 1   MNSCCDFLQRLGADLSFKIFTYLDDPSDLVHVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60

Query: 61  SGAPHFIEVKGMIDTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASS 120
           SGAPHFIEVKGMID S VGSS+IT WE LQ+FHRIYLLLAKSLNPV R DCIAVAIGASS
Sbjct: 61  SGAPHFIEVKGMIDVSAVGSSSITKWEHLQKFHRIYLLLAKSLNPVTRTDCIAVAIGASS 120

Query: 121 TDNNPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL 180
           TDNNPIESIENTLEPGDRF NRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL
Sbjct: 121 TDNNPIESIENTLEPGDRFRNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL 180

Query: 181 AYFQDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPM 240
           AYFQD FPIYSS+AVRFKMGHQ VS+ SS    N S VDY+ E+DD FIWTYVSPEFPM
Sbjct: 181 AYFQDEFPIYSSRAVRFKMGHQNVSIYSSI---NDSTVDYDPETDD-FIWTYVSPEFPM 235

[Close]
BLAST of ClCG01G005610 vs. TrEMBL
Match: A0A0H4TYB1_MOMCH (F-box protein OS=Momordica charantia PE=2 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 2.3e-100
Identity = 185/240 (77.08%), Postives = 205/240 (85.42%), Query Frame = 1 

Query: 1   MNSSWDFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60
           M+S+W+FLQWLG DLS KI + LDDPSDL RVCLVTSSWRQFV+ENSLSKQLCLRLFP+L
Sbjct: 1   MDSTWNFLQWLGDDLSIKILTHLDDPSDLHRVCLVTSSWRQFVVENSLSKQLCLRLFPEL 60

Query: 61  SGAPHFIEVKGMIDTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASS 120
           SGAPHFIEVKGMIDT T GSSN+T WESL+R HRIYLLLAKSL  + RKDCI+VAI ASS
Sbjct: 61  SGAPHFIEVKGMIDTPTFGSSNVTKWESLKRVHRIYLLLAKSLYHIMRKDCISVAISASS 120

Query: 121 TDNNPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL 180
           TDN P ESI+NTL+ GDR  +RASYWSSLGS+D + PETLTY  VSNLCVVSEIHIQPF 
Sbjct: 121 TDNYPEESIDNTLKAGDRIQHRASYWSSLGSKDANAPETLTYEFVSNLCVVSEIHIQPFQ 180

Query: 181 AYFQDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPMA 240
           AYFQ GFPIYSS+AVRFKMGH++ S+NSSTNIS+ S         DNFIWTYVSPEFPMA
Sbjct: 181 AYFQYGFPIYSSRAVRFKMGHRESSLNSSTNISSDS-------ESDNFIWTYVSPEFPMA 233

[Close]
BLAST of ClCG01G005610 vs. TrEMBL
Match: A0A061G138_THECC (F-box family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_015100 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 8.7e-71
Identity = 137/240 (57.08%), Postives = 172/240 (71.67%), Query Frame = 1 

Query: 1   MNSSWDFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60
           M++  DF++ LG D+S KI   LD+P+DL+RVCLV+SSWRQFVI N L KQLCL+L P++
Sbjct: 1   MDNCCDFIKLLGPDMSMKILLHLDNPADLIRVCLVSSSWRQFVISNGLCKQLCLKLLPEI 60

Query: 61  SGAPHFIEVKGMIDTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASS 120
           S   H IEV  +ID   +   +    E L+R HR+Y  LA+ LNP+ RKDCI+ AI ASS
Sbjct: 61  SSVAHTIEVNNLIDPVKLRQHDHLELECLRRNHRVYAFLARGLNPLTRKDCISEAISASS 120

Query: 121 TDNNPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL 180
           TDN P ESI NTLEP DR  + ASYWSS G  DP +PETL Y LV+ +C+V+E H+QPF 
Sbjct: 121 TDNYPEESIHNTLEPLDRIEHIASYWSSEGQSDPAIPETLIYKLVAKVCLVTEFHVQPFQ 180

Query: 181 AYFQDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPMA 240
           AYFQ GFPIYSSKAVRF++GH ++   S T   +GS   +   +DD FIWTY+SPEFPMA
Sbjct: 181 AYFQYGFPIYSSKAVRFRLGHPRLPEASDT--KDGSMPSHRL-ADDKFIWTYISPEFPMA 237

[Close]
BLAST of ClCG01G005610 vs. TrEMBL
Match: A0A0D2TE39_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G279900 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 6.2e-69
Identity = 136/239 (56.90%), Postives = 170/239 (71.13%), Query Frame = 1 

Query: 1   MNSSWDFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60
           M+   DF++ LG D+S KI   L +PSDL+RV LV+SSW QFVIEN L KQLCL+LFP++
Sbjct: 1   MDYCGDFIELLGPDISTKILMNLVNPSDLIRVSLVSSSWHQFVIENGLGKQLCLKLFPEI 60

Query: 61  SGAPHFIEVKGMIDTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASS 120
           SG  H IE+  +IDT     ++    E L++ HRIY LLA++ NP  RKDCI+ A+ ASS
Sbjct: 61  SGIVHTIEMNNLIDTVGHKQNDCDELECLRKNHRIYTLLAQAFNPFVRKDCISEAVIASS 120

Query: 121 TDNNPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL 180
           TDN P ESI NTLEP DR   RASYWSS G  +P VPETL Y L++ +C+V+EIH+QPF 
Sbjct: 121 TDNYPEESIHNTLEPFDRIDTRASYWSSEGQNNPAVPETLLYKLMTKMCIVTEIHVQPFQ 180

Query: 181 AYFQDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPM 240
           AYFQ  FPIYSSKAVRF+MGH+  S  + ++ S+      N  +DD FIWTY SPEFPM
Sbjct: 181 AYFQYNFPIYSSKAVRFRMGHKLQSEMTDSSTSS------NKWADDEFIWTYTSPEFPM 233

[Close]
BLAST of ClCG01G005610 vs. TrEMBL
Match: A0A0D2Q375_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G279900 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 6.2e-69
Identity = 136/239 (56.90%), Postives = 170/239 (71.13%), Query Frame = 1 

Query: 1   MNSSWDFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60
           M+   DF++ LG D+S KI   L +PSDL+RV LV+SSW QFVIEN L KQLCL+LFP++
Sbjct: 1   MDYCGDFIELLGPDISTKILMNLVNPSDLIRVSLVSSSWHQFVIENGLGKQLCLKLFPEI 60

Query: 61  SGAPHFIEVKGMIDTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASS 120
           SG  H IE+  +IDT     ++    E L++ HRIY LLA++ NP  RKDCI+ A+ ASS
Sbjct: 61  SGIVHTIEMNNLIDTVGHKQNDCDELECLRKNHRIYTLLAQAFNPFVRKDCISEAVIASS 120

Query: 121 TDNNPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL 180
           TDN P ESI NTLEP DR   RASYWSS G  +P VPETL Y L++ +C+V+EIH+QPF 
Sbjct: 121 TDNYPEESIHNTLEPFDRIDTRASYWSSEGQNNPAVPETLLYKLMTKMCIVTEIHVQPFQ 180

Query: 181 AYFQDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPM 240
           AYFQ  FPIYSSKAVRF+MGH+  S  + ++ S+      N  +DD FIWTY SPEFPM
Sbjct: 181 AYFQYNFPIYSSKAVRFRMGHKLQSEMTDSSTSS------NKWADDEFIWTYTSPEFPM 233

[Close]
BLAST of ClCG01G005610 vs. TAIR10
Match: AT4G00755.1 (AT4G00755.1 F-box family protein)

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-54
Identity = 112/237 (47.26%), Postives = 141/237 (59.49%), Query Frame = 1 

Query: 6   DFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDLSGAPH 65
           DF+  L  D S  I S LDDPSD+VR   V+ SWRQFV++ SLSK LCL+LF  LS   H
Sbjct: 2   DFVNNLDTDTSLSILSCLDDPSDIVRASAVSRSWRQFVVKYSLSKNLCLKLFHQLSNVDH 61

Query: 66  FIEVKGMI--DTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASSTDN 125
            IE       ++S  GSS++     L++ HR + LLA+       + CIA AI ASSTDN
Sbjct: 62  IIETSNDRNGESSEAGSSSLMDTRLLEKEHRAFALLARGCMSSPIESCIADAIRASSTDN 121

Query: 126 NPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFLAYF 185
            P+ESI NTLE  DR     SYWSS G     VPE+L Y L+ +LC+++E+ I PF AYF
Sbjct: 122 YPVESILNTLEKRDRIGRTPSYWSSTGQHKTTVPESLLYKLIGDLCLITEVSIHPFQAYF 181

Query: 186 QDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPMA 241
           Q G PIYSS  VRF++GH+K +     N  +       S  + N++WTY S EF MA
Sbjct: 182 QRGHPIYSSHYVRFRLGHEKDNSPHYNNSQDKKGEPGKSSIESNYVWTYTSQEFSMA 238

[Close]
BLAST of ClCG01G005610 vs. NCBI nr
Match: gi|659073023|ref|XP_008467220.1| (PREDICTED: F-box protein At4g00755-like [Cucumis melo])

HSP 1 Score: 436.8 bits (1122), Expect = 2.5e-119
Identity = 216/239 (90.38%), Postives = 227/239 (94.98%), Query Frame = 1 

Query: 1   MNSSWDFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60
           MNSS DFLQ LG DLSFKIF+ LDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDL
Sbjct: 1   MNSSCDFLQRLGDDLSFKIFTHLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60

Query: 61  SGAPHFIEVKGMIDTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASS 120
           SGAPHFIE +GMID ST+GSS++T WE LQRFH+IYLLLAKSLNPV+R DCIAVAIGASS
Sbjct: 61  SGAPHFIEDQGMIDISTIGSSSVTKWEYLQRFHQIYLLLAKSLNPVSRTDCIAVAIGASS 120

Query: 121 TDNNPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL 180
           TDNNPIESIENTLEPGDRFHNRASYWSSLGS+DPDVPETLTYGLVSNLCVVSEIHIQPFL
Sbjct: 121 TDNNPIESIENTLEPGDRFHNRASYWSSLGSKDPDVPETLTYGLVSNLCVVSEIHIQPFL 180

Query: 181 AYFQDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPM 240
           AYFQDGFPIYSS+AVRFKMGHQ+VSVNSSTNISN SAVDY+ ESDD FIWTYVSPEFPM
Sbjct: 181 AYFQDGFPIYSSRAVRFKMGHQRVSVNSSTNISNDSAVDYDPESDD-FIWTYVSPEFPM 238

[Close]
BLAST of ClCG01G005610 vs. NCBI nr
Match: gi|449451757|ref|XP_004143627.1| (PREDICTED: F-box protein At4g00755-like [Cucumis sativus])

HSP 1 Score: 413.7 bits (1062), Expect = 2.2e-112
Identity = 209/239 (87.45%), Postives = 216/239 (90.38%), Query Frame = 1 

Query: 1   MNSSWDFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60
           MNS  DFLQ LGADLSFKIF+ LDDPSDLV VCLVTSSWRQFVIENSLSKQLCLRLFPDL
Sbjct: 1   MNSCCDFLQRLGADLSFKIFTYLDDPSDLVHVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60

Query: 61  SGAPHFIEVKGMIDTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASS 120
           SGAPHFIEVKGMID S VGSS+IT WE LQ+FHRIYLLLAKSLNPV R DCIAVAIGASS
Sbjct: 61  SGAPHFIEVKGMIDVSAVGSSSITKWEHLQKFHRIYLLLAKSLNPVTRTDCIAVAIGASS 120

Query: 121 TDNNPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL 180
           TDNNPIESIENTLEPGDRF NRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL
Sbjct: 121 TDNNPIESIENTLEPGDRFRNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL 180

Query: 181 AYFQDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPM 240
           AYFQD FPIYSS+AVRFKMGHQ VS+ SS    N S VDY+ E+DD FIWTYVSPEFPM
Sbjct: 181 AYFQDEFPIYSSRAVRFKMGHQNVSIYSSI---NDSTVDYDPETDD-FIWTYVSPEFPM 235

[Close]
BLAST of ClCG01G005610 vs. NCBI nr
Match: gi|874969610|gb|AKQ06191.1| (F-box protein [Momordica charantia])

HSP 1 Score: 373.2 bits (957), Expect = 3.4e-100
Identity = 185/240 (77.08%), Postives = 205/240 (85.42%), Query Frame = 1 

Query: 1   MNSSWDFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60
           M+S+W+FLQWLG DLS KI + LDDPSDL RVCLVTSSWRQFV+ENSLSKQLCLRLFP+L
Sbjct: 1   MDSTWNFLQWLGDDLSIKILTHLDDPSDLHRVCLVTSSWRQFVVENSLSKQLCLRLFPEL 60

Query: 61  SGAPHFIEVKGMIDTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASS 120
           SGAPHFIEVKGMIDT T GSSN+T WESL+R HRIYLLLAKSL  + RKDCI+VAI ASS
Sbjct: 61  SGAPHFIEVKGMIDTPTFGSSNVTKWESLKRVHRIYLLLAKSLYHIMRKDCISVAISASS 120

Query: 121 TDNNPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL 180
           TDN P ESI+NTL+ GDR  +RASYWSSLGS+D + PETLTY  VSNLCVVSEIHIQPF 
Sbjct: 121 TDNYPEESIDNTLKAGDRIQHRASYWSSLGSKDANAPETLTYEFVSNLCVVSEIHIQPFQ 180

Query: 181 AYFQDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPMA 240
           AYFQ GFPIYSS+AVRFKMGH++ S+NSSTNIS+ S         DNFIWTYVSPEFPMA
Sbjct: 181 AYFQYGFPIYSSRAVRFKMGHRESSLNSSTNISSDS-------ESDNFIWTYVSPEFPMA 233

[Close]
BLAST of ClCG01G005610 vs. NCBI nr
Match: gi|590672402|ref|XP_007038601.1| (F-box family protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 275.0 bits (702), Expect = 1.2e-70
Identity = 137/240 (57.08%), Postives = 172/240 (71.67%), Query Frame = 1 

Query: 1   MNSSWDFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60
           M++  DF++ LG D+S KI   LD+P+DL+RVCLV+SSWRQFVI N L KQLCL+L P++
Sbjct: 1   MDNCCDFIKLLGPDMSMKILLHLDNPADLIRVCLVSSSWRQFVISNGLCKQLCLKLLPEI 60

Query: 61  SGAPHFIEVKGMIDTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASS 120
           S   H IEV  +ID   +   +    E L+R HR+Y  LA+ LNP+ RKDCI+ AI ASS
Sbjct: 61  SSVAHTIEVNNLIDPVKLRQHDHLELECLRRNHRVYAFLARGLNPLTRKDCISEAISASS 120

Query: 121 TDNNPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL 180
           TDN P ESI NTLEP DR  + ASYWSS G  DP +PETL Y LV+ +C+V+E H+QPF 
Sbjct: 121 TDNYPEESIHNTLEPLDRIEHIASYWSSEGQSDPAIPETLIYKLVAKVCLVTEFHVQPFQ 180

Query: 181 AYFQDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPMA 240
           AYFQ GFPIYSSKAVRF++GH ++   S T   +GS   +   +DD FIWTY+SPEFPMA
Sbjct: 181 AYFQYGFPIYSSKAVRFRLGHPRLPEASDT--KDGSMPSHRL-ADDKFIWTYISPEFPMA 237

[Close]
BLAST of ClCG01G005610 vs. NCBI nr
Match: gi|763785761|gb|KJB52832.1| (hypothetical protein B456_008G279900 [Gossypium raimondii])

HSP 1 Score: 268.9 bits (686), Expect = 8.9e-69
Identity = 136/239 (56.90%), Postives = 170/239 (71.13%), Query Frame = 1 

Query: 1   MNSSWDFLQWLGADLSFKIFSQLDDPSDLVRVCLVTSSWRQFVIENSLSKQLCLRLFPDL 60
           M+   DF++ LG D+S KI   L +PSDL+RV LV+SSW QFVIEN L KQLCL+LFP++
Sbjct: 1   MDYCGDFIELLGPDISTKILMNLVNPSDLIRVSLVSSSWHQFVIENGLGKQLCLKLFPEI 60

Query: 61  SGAPHFIEVKGMIDTSTVGSSNITTWESLQRFHRIYLLLAKSLNPVARKDCIAVAIGASS 120
           SG  H IE+  +IDT     ++    E L++ HRIY LLA++ NP  RKDCI+ A+ ASS
Sbjct: 61  SGIVHTIEMNNLIDTVGHKQNDCDELECLRKNHRIYTLLAQAFNPFVRKDCISEAVIASS 120

Query: 121 TDNNPIESIENTLEPGDRFHNRASYWSSLGSRDPDVPETLTYGLVSNLCVVSEIHIQPFL 180
           TDN P ESI NTLEP DR   RASYWSS G  +P VPETL Y L++ +C+V+EIH+QPF 
Sbjct: 121 TDNYPEESIHNTLEPFDRIDTRASYWSSEGQNNPAVPETLLYKLMTKMCIVTEIHVQPFQ 180

Query: 181 AYFQDGFPIYSSKAVRFKMGHQKVSVNSSTNISNGSAVDYNSESDDNFIWTYVSPEFPM 240
           AYFQ  FPIYSSKAVRF+MGH+  S  + ++ S+      N  +DD FIWTY SPEFPM
Sbjct: 181 AYFQYNFPIYSSKAVRFRMGHKLQSEMTDSSTSS------NKWADDEFIWTYTSPEFPM 233

The following BLAST results are available for this feature:
BLAST of ClCG01G005610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FB345_ARATH4.0e-5347.26F-box protein At4g00755 OS=Arabidopsis thaliana GN=At4g00755 PE=2 SV=1[more]
BLAST of ClCG01G005610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRU1_CUCSA1.6e-11287.45Uncharacterized protein OS=Cucumis sativus GN=Csa_5G173530 PE=4 SV=1[more]
A0A0H4TYB1_MOMCH2.3e-10077.08F-box protein OS=Momordica charantia PE=2 SV=1[more]
A0A061G138_THECC8.7e-7157.08F-box family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_015100 PE=4 S... [more]
A0A0D2TE39_GOSRA6.2e-6956.90Uncharacterized protein OS=Gossypium raimondii GN=B456_008G279900 PE=4 SV=1[more]
A0A0D2Q375_GOSRA6.2e-6956.90Uncharacterized protein OS=Gossypium raimondii GN=B456_008G279900 PE=4 SV=1[more]
BLAST of ClCG01G005610 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00755.12.3e-5447.26 F-box family protein[more]
BLAST of ClCG01G005610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659073023|ref|XP_008467220.1|2.5e-11990.38PREDICTED: F-box protein At4g00755-like [Cucumis melo][more]
gi|449451757|ref|XP_004143627.1|2.2e-11287.45PREDICTED: F-box protein At4g00755-like [Cucumis sativus][more]
gi|874969610|gb|AKQ06191.1|3.4e-10077.08F-box protein [Momordica charantia][more]
gi|590672402|ref|XP_007038601.1|1.2e-7057.08F-box family protein, putative isoform 1 [Theobroma cacao][more]
gi|763785761|gb|KJB52832.1|8.9e-6956.90hypothetical protein B456_008G279900 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G005610.1ClCG01G005610.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 16..55
score: 3.
IPR001810F-box domainunknownSSF81383F-box domaincoord: 3..63
score: 1.83
NoneNo IPR availableGENE3DG3DSA:1.20.1280.50coord: 6..60
score: 6.
NoneNo IPR availablePANTHERPTHR22844F-BOX AND WD40 DOMAIN PROTEINcoord: 1..240
score: 1.4E
NoneNo IPR availablePANTHERPTHR22844:SF176SUBFAMILY NOT NAMEDcoord: 1..240
score: 1.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G005610Csa5G173530Cucumber (Chinese Long) v2cuwcgB364
ClCG01G005610MELO3C005372Melon (DHL92) v3.5.1mewcgB019
ClCG01G005610Cla002334Watermelon (97103) v1wcgwmB145
ClCG01G005610Cla97C01G005870Watermelon (97103) v2wcgwmbB089
ClCG01G005610Bhi12G000691Wax gourdwcgwgoB191
ClCG01G005610CSPI05G08450Wild cucumber (PI 183967)cpiwcgB379
ClCG01G005610Cucsa.166380Cucumber (Gy14) v1cgywcgB289
ClCG01G005610CmaCh15G014120Cucurbita maxima (Rimu)cmawcgB256
ClCG01G005610CmoCh15G014890Cucurbita moschata (Rifu)cmowcgB244
ClCG01G005610Lsi09G005920Bottle gourd (USVL1VR-Ls)lsiwcgB008
ClCG01G005610Cp4.1LG13g00360Cucurbita pepo (Zucchini)cpewcgB168
ClCG01G005610CsGy5G005840Cucumber (Gy14) v2cgybwcgB332
ClCG01G005610MELO3C005372.2Melon (DHL92) v3.6.1medwcgB017
ClCG01G005610Carg20768Silver-seed gourdcarwcgB0716
ClCG01G005610CsaV3_5G005840Cucumber (Chinese Long) v3cucwcgB385
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G005610Cucurbita pepo (Zucchini)cpewcgB640
ClCG01G005610Bottle gourd (USVL1VR-Ls)lsiwcgB328
ClCG01G005610Melon (DHL92) v3.6.1medwcgB051
ClCG01G005610Silver-seed gourdcarwcgB0688
ClCG01G005610Wax gourdwcgwgoB201
ClCG01G005610Cucumber (Gy14) v1cgywcgB447
ClCG01G005610Cucurbita maxima (Rimu)cmawcgB519
ClCG01G005610Cucurbita moschata (Rifu)cmowcgB517
ClCG01G005610Cucumber (Chinese Long) v2cuwcgB376
ClCG01G005610Melon (DHL92) v3.5.1mewcgB052