ClCG01G004820 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G004820
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	U6 snRNA phosphodiesterase
Location	CG_Chr01 : 5112106 .. 5119483 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACCACCATAGTTGCTGCCATTGACAGAGCAAAGAATGGATGCTCTGAGGGTTTCGTATGGAGGAAGCTCATCAGATGAAGAAGTGGATACAGTCTCCCCTTCATCAGGATCAACGTCAACATCAACATCAACACCACAACCCTTCGATGAGATTGTGAGCTTTTTACCTCTGCCTCCACCACCTCTCTCACTTCTCCATTTTCCAAATTCCTCCTGTAGTGCCCTTTTTCCTCCTTACATTTGCATTCTTTATTTTTTTCTCTTTGTAACATTGCTCATCAACTCTTTCACTATTTCTTGTTTAGCTGTTTTGGATGAGTTGCCAATTGATCAAGTGACTAGGGTTCGAAGCTTTCCTCATGTTCAAGGAAACTATGCCCTACACCTTTACATCCCAGGTATGTGAAGCTATGTAGTAGTTCATCTAATTTGATTCTTAAACATACTTTTCGTGTTTCCATTTTGATCCACCCGATGGGGCTTTTTTTGTTTTGTTATATATTTGGAAATACTTGTTACTCTTTATTGGCATATTGTTAGTTGGAACAGCTGCAATTCTATTTCTAGTGAGCTCTTCTCTGGTTTTTTTTAAGTAAAAGAAACAATTTCATTGAGAAATGAAAAATGGGAGAACCTCAAACACCCAAAGGTGATTACATCAAGGAGCGAGTGTTGCAATTTTTACCAAGAGAAAGCAGTAAACAAAATCGATTCTATAAATCGATCAAAAGAAAAGAAATGAACGTTAAAAGGCCGATTATTGCACTTGCCCCATAGTCTCCAGAAGAAAGCATGCACAATGGTCAACCAGACCGATTTCTTAGTACCACCAAAAGGATGACCCACCAATAAGGAAGCCAAAGTAGTAGAAATAAAGCTTGGACTAGTGAAAGACCAACCAAAAGCAGCCAAAATAATTCCCCAAAATCTGGAAGCAAACGAACAGTATAAAAACAAGTGGATGGTAGTCTCAGCACACTGACCACACATAATGCACCAAGAGGGAGAAAGATACATGTATGGGAAACATCGCTGCAATTGATCATTAGTGTTGATGGCACCCCAGCTAAGCTCCCCAAATGAAGATTTGATCTTCTTTGGATAACAATCTTTCCAAATTAAAGTATGAAGATCAGCTAAGGTTGAGTCAAGAGTATCCACCAAATCTGCCATGAGATATTTAACCGTAAAAATCATGGATGGGTCCAAATGCTAGATCCAAGCATTGGGAGAGGAGGTCAATCTAGCAGAAGCCAGATGATGCGATAGGGAAGCCCATTCAACGATTTCTAACTCAGTAAGGTTACGACGAAGATTTAGGTCCCAAGCATTGGATGATGAAATCCAAACATTTGCCACGGTAGCCTCCGGAAGCTGAATAAGGCGAAAATGTCTTGGGAATGCAGATGAAAGGACACCACAATTAATCCAAGAGCCATTCCAAAAAGATGTAGTAAAACCATTTCCAATTTTCCACCGGATATGATCAGTAACCAAACCAATGTAGTGACTAATAGACTTCCAAGGGGCCTTATAGGAGGCATTAGAGATCGGAGTAGGCCAAGAGCAAACCACACCATAATATTTTGCCACAATAAGATTTCTCCATAGAGCATCATTCTCGGTAAGAAATTGCCAAGTCCATTTTGCAAGAATGCGGGAATTACGAAGCTTAAAATTACCAATACCAAGGCCCCCCAAGGCATGTGGACGTTGAGTGGTTCCCCACTTCACGTTGTGCACGCCACCATTGCCCCGGGCACCCTCCCAAAAGAAATGACGAACCAACTTATCAAGGCAATTGATAATAGAGGAGGGAACTTTTTGAATAAGGATAAATAATACGTAGGCAGATTAGAAAGAGTAGCTTGAATGAGAGTATGTCTTCCCCCTTACGAGATATATGCATACTTCTAATTATGAAGTTTATGCTGAAATTTTTCCACCATAGGTTGCCAAAAAATAGCAGAATTGGAGTTACCACCTAATGGAAGCCCAAGATAAGTAGAGGGCCAGAAACCTCTTTTGCAGGCAAAGGAATTCACCAACCAATCAATATTAGAATCAAATACATGAATACCAAGGAGCTCGCTCTTAGAGAAATTTATTTTTAATCCAATAGCATTTTCAAAAATACAGACAACCTCAAACAAATTCTGAATAGCAGGACGGTTGACAGTAGAGAAAAACAATGTGTCATCAGCAAATTGTAGATGGTTCAAGGAGAAGGTTGAATTACTGACCGGGTGAGCAATAGTAAGACCCAAAGAGGAGCTATGGTCAAGGAGGCGACTCAAGCAATCAGCAACTAAGATAAATAAGAAAGGGGAGAGAGGATCACCCTGTCTAATACCACGAGTGAGAATAATCATCCCTTGGGGATGGCCATTAATAATAATGGAGTAATTTGCACTAGTAACACAACCTCTGATCCAAGAGCGCCAAAGACAACCAAAACCTTTAACCTTGAGAATAGAGTCAAGCATCTCCCAATCCACCGTGTCAAAAGCCTTCTCGAGATCAAGCTTAAGGACAACCCCAATCTTCTTAGAAGCAGACCAATGTTCAATGATCTCATTGGCCATCAAGGAGGCATCCAGAATCTGCCTGTTTTCCACAAAAGCGAGCTGGTTGGCTGAGATGGTATAAGGAAGAATCATCTTATTGAGAGAATCCGAGCCACAATTTTATAAGCATAGGGAATGAGACTAATAGGCCTATAGTCAGAAACTGATTTTGAGTCCACCTTCTTAGGAATTAAACAAATGTAGGTCTCATTCAGTTTAATATTTATAACCCCAGATGTGTAAAAATCTTGAATAAGGCGGATCATGTCAGATTTAATGGTGGACCAAAAGAATTTGAAAAATTCAATAGTGAAACCATCAGGGCCAAGAGGTTTATTTGTGCCAAGGGAGGAGACCGCCAAGAAAACCTCCTCTTCCGTAAAAGAGCGCTCCAAATCAGTAGCTTGAGAGGCTGATATAGGGCTCCAATCAAGGTTTGTTGGAAGAAAACGCTGATTATCGTCTTTAGTATAAAAGTTTGAATAAAAACCCAAGAATTCAATCTCAATGTCCTTGTCGCTTAGGAGACTAGTACCATTTCTGGAGAGAATTTCTGTGATCGTACTTTTTCGACGTCGAGCTACAACAAATCTGTGAAAAAAACAAGTATTTTCAACCCCTTCAACAAGCCATTTCAGTTTACAATGTTGCTGCCAATGAATATGATCTTGAACAGTCAAATTTTCAATTTGCTCTCGAATCAATCGACGCCTAATAATCTGATCTTCAGTAACAGAACCTCTATCCTTAGAATCATCTAACTATGCCAATTGTGTGATAAGAGATGGAAGTTTTGAAGCTTCTGTATGTTGAGTATTGTGCCACTCTCGGATAACTAATTTCAAACCTTGCAATTTCGTCATAAAACCATGTTCAGGCCAGTCAGTAATAGGATGGAGGTTCCGCCAATCCTCCACTAAAGTGCAGAAACCTGGAACTTTAAGCCAAGAGTTTTCAAATCAAAAGAGACATGGACCCCATGCAATGTTTCTCGTAGCAAGGCTAAAGGATAATGGTCAGATGTGACACGCTCCAGCCTCTAGAGATTAACAACCCCAAATTTGCGAAGGCAATTCTCTGTGAGGAGAAAATGGTCTAGAAGAGAGAGATATTGGGGGGGGGGGGGGGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGTCTATAGCTAGACCAAGTAAAACATCCATTGGACAATGAAATATCTCGCAATTGGTAAGTAGAAATCGATTGGTTGAAAGAGCGCATACTAGCAGAGATAGAATTATCGTGTGATTTCTCCCATGACCACCTAGTAACATTGAAATCTCCACCAATAACCTAGTTATCACCACCCAAACCAGCCAGGACATCAAGCTCTTGCCCAAAATCAGCATGGGAAGCATTATCCGACAGGCCGTAGACTGCAGAAAGCCAAAATGAATAGCCATCAGTCAAGGATACATGGACCGACACTGTGTAGTGGCCATGGATGACTTCCTGAATTGTAAAATCAAGTTCACTCCACATGATAAGGATCCCCCTGAAGTATCTATGGCATCCAAAGCAGTCCATCCAATGAAAGAGGAACTCTAGATAGATTTGATCAAAAAGGTGTCAACAAATGGTAACTTTGTTTCTTGGAGGAGGACAATGCTAGGGTTGTGTTGCTGAATAAGCTTTTTAACCAAAGTTCATTTCCTCCAAGAGTTTATTCCTCAAACATTCCAAGAGAGAAGCTTGATTGATAGTCGGATGGGCCCTCCTTAATAGCCAAGGTGGCTGTTTTGTCATAATTGATTGATGATTGAAGACCAAGAAGCTATCTCTGGAGTTTAGTGTTTTTGCTGACGGAGGAGTATGGCTTCTTGGCTTTATTTGTAGGTGGATTAGCGGATGCCATAACACACAAACCGTGTTTTTCAAGTAAGGAAGCCAAATTGTTAAGGCTGAAAGGAAGAGGAGAAGATGATTGAGGTTGCTGTTGATTGTAAAAAGAGGAGATAGGTGTTGGAGGATAAATTATTGATGTAGACGGGTTCAAAACCGGATCATTTGAGCCACGGTTAAGGTCAGATGGGATGGGAGGGAGGGAATAAAGAGGAAGTTGATTTGTTTTAGATGATCCCCAAAAACAGCCAGGGCGATTTGGTAAATTCCATGTCAATAGTAGGGCTAGAGGTATCCTTCTGTGTCAGAACCAACAAAGGAGACATTGGGTTTATTTGCTGATGTGGAGAAGGATGTGCCAGCGTGTAGATTGGTGGGCCCCTCACGGAATGTAATAGCAGATAGCGAAGGTTGAGAAGGTTGAGAAGGTTGAGAAAAAGATGGGGAAGCAGATTTGGAAGGGCTAGGATTTTGTATTTGGAAGGTAAAAGAGTGAGGAGAATTGGTGGGATTATGGGGGGAATTGGATAAGATGTATTCGGACTAATGGATGGTTCAGATTGTGGGGAGGGATAGGGAGCTCTTCTTTGGTTGATCACTGATTCATTATTAACAAGTAGATTGTTAGAGTCTAGATTGGAATCAATGTCTAACAATTAATCATAAACCTCGTGTGTGTTTTTTTTTTTTTTTTTTTTTTGGCTACTCTTACAACATCGTCTTCTTGAAATATGTGTTGATTTCATTTTGGTTTATGTCTCTCAACCCTTTAGCCTACTATATTGCCTCTTAAGCATGATTAGTAATACTTATCACTTGCATGCATTTCAGTACATCCATAATTTTGCCTTTATCACCTTATGGAATTCTAGAATATTAATAACCAACTAAGAAATCAATAATATCTACGATAATGTTTCAACAATACCTACAAGTGTCAGATGATGGCTACTTTTAAACTGTTGGGTTTTTGACTCTTGAATGAAAAATTCCTCTGAGCTTCTTTCGTCAATTGAAGCACTTTCACAAAATTCCGTGATCAATGTATCTGCAATCTTCTAAATGTTTGTTCTTGATGAGGAAAAGCAGTTAAAGTAGATACGACTTATTTAAAAGAAATATGCACGTCTTTTTGTTATAAGTTTGTAGTTTCTGTTTAGTTTATTGATTTATAATCAAAACATTAAAAGAGATTTTAAACATCTACGAGTTAAAACATTCTCAAATACATGGATCTAAATAATTGTTGTGATTTTTCATTTGTTCTATGCAATACGACTTTTCACATAGATGCCCATTTGATTTTTCATGTTCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAGTTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATATTGACGTTCCTTTGGACGTTTTATGTAAAGATGACCTCAAACTTGAGCAAGCATTGACTAGAGAATTTCACATAAGTTTGTCAAGAACAATGGCAATCCGAGTACACCAGATTGACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGGTAAGTTTAAACCGTCCATTTAGTACGATTAGTAATTTCCAAGTCGTTTTTGTATTTAACTTGTGTTTTTTTAAACAGTTATTGGATTGATTTTAGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGGACCTTTTTGTCAATGGAAATTATTACTGGAGGGCTAATGGAGGTACGTCACATTTGAGGGATTTCCATTTCCGTTGTCTTTGCATTTTTAGCGTAAACGTGCTTTTCTTCATTCACAATTTTTGGGCCAATAATATGGGATGTTCCACTTCTGTTAAAGTTTCTTAGTTAGATTGTAGTTAACCCTTTACTTCACTTGTGGGTTTGATTTATGCATCTGATGCATAGATCAAAAGTTTTGACTTAGAATATCAGACAATAATTTTTACGTAGAATCTTGTAGGATGAGACAATTTTTTTATAGAATTTGTTGAGATTTGCTGAAATTTGATTACAAATGCATACACATACATGCAGGCATGTGCATAGATGTGTTTTGCATTCATGTTATTCAAAAATTAAATATTGGTAAATTAGGATTAAGTTGCCAACCCAACATGCGACTGTGACAATAATTTGTTGTACGCATTTAGTATTGTTATTCTCTCTAACACACGTTTTTGATATTACAAGTTGTTTATAAATGTAAACTCAAGAACAAACTTGTTTGTTAGGCCATCTTTGTTTGAGATCTTTCGACATAGATCATGATGATTTCTTGAGTTTTACATGGTTGAGGTTGACAATATTACATGGATTAAAGAGTGGTCCCTTTGTTTTCAATTGTCTGCAGATCAGAAGACAAATCCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGTTAATTGCATTAATTTTTTTCCCCCCTTCATCTTTATTCAATTATTAATGAAGAAGATGACCTCCTAGACTCTATTTTTGTAGGAAGCAAGACCACATATATCTTTTGTCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCAAGCAGTTCATAATGAATTGAAAAGGTCCGCAGTTAAGGAATCATTGAAGAGGTGTATTTTCAGCACCAAATTCAACGGTATCGAATGTAAGATTGGTAAAAAATTGTATAAAATATGTAAATTTCCTGATGAATAAAAAGATCATCGTGAAACGTGTCCTATTGTTTTCATATGTGCCCATGAAGTTCTTTTTATTTATTTCAGC

mRNA sequence

GCACCACCATAGTTGCTGCCATTGACAGAGCAAAGAATGGATGCTCTGAGGGTTTCGTATGGAGGAAGCTCATCAGATGAAGAAGTGGATACAGTCTCCCCTTCATCAGGATCAACGTCAACATCAACATCAACACCACAACCCTTCGATGAGATTGTGAGCTTTTTACCTCTGCCTCCACCACCTCTCTCACTTCTCCATTTTCCAAATTCCTCCTGTACTGTTTTGGATGAGTTGCCAATTGATCAAGTGACTAGGGTTCGAAGCTTTCCTCATGTTCAAGGAAACTATGCCCTACACCTTTACATCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAGTTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATATTGACGTTCCTTTGGACGTTTTATGTAAAGATGACCTCAAACTTGAGCAAGCATTGACTAGAGAATTTCACATAAGTTTGTCAAGAACAATGGCAATCCGAGTACACCAGATTGACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGTTATTGGATTGATTTTAGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGGACCTTTTTGTCAATGGAAATTATTACTGGAGGGCTAATGGAGATCAGAAGACAAATCCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGAAGCAAGACCACATATATCTTTTGTCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCAAGCAGTTCATAATGAATTGAAAAGGTCCGCAGTTAAGGAATCATTGAAGAGGTGTATTTTCAGCACCAAATTCAACGGTATCGAATGTAAGATTGGTAAAAAATTGTATAAAATATGTAAATTTCCTGATGAATAAAAAGATCATCGTGAAACGTGTCCTATTGTTTTCATATGTGCCCATGAAGTTCTTTTTATTTATTTCAGC

Coding sequence (CDS)

ATGGATGCTCTGAGGGTTTCGTATGGAGGAAGCTCATCAGATGAAGAAGTGGATACAGTCTCCCCTTCATCAGGATCAACGTCAACATCAACATCAACACCACAACCCTTCGATGAGATTGTGAGCTTTTTACCTCTGCCTCCACCACCTCTCTCACTTCTCCATTTTCCAAATTCCTCCTGTACTGTTTTGGATGAGTTGCCAATTGATCAAGTGACTAGGGTTCGAAGCTTTCCTCATGTTCAAGGAAACTATGCCCTACACCTTTACATCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAGTTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATATTGACGTTCCTTTGGACGTTTTATGTAAAGATGACCTCAAACTTGAGCAAGCATTGACTAGAGAATTTCACATAAGTTTGTCAAGAACAATGGCAATCCGAGTACACCAGATTGACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGTTATTGGATTGATTTTAGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGGACCTTTTTGTCAATGGAAATTATTACTGGAGGGCTAATGGAGATCAGAAGACAAATCCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGAAGCAAGACCACATATATCTTTTGTCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCAAGCAGTTCATAATGAATTGAAAAGGTCCGCAGTTAAGGAATCATTGAAGAGGTGTATTTTCAGCACCAAATTCAACGGTATCGAATGTAAGATTGGTAAAAAATTGTATAAAATATGTAAATTTCCTGATGAATAA

Protein sequence

MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSSCTVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPDE

Homology

[Close]

BLAST of ClCG01G004820 vs. Swiss-Prot
Match: USB1_MOUSE (U6 snRNA phosphodiesterase OS=Mus musculus GN=Usb1 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.6e-22
Identity = 76/291 (26.12%), Postives = 130/291 (44.67%), Query Frame = 1


Query: 6   VSYGGSSSDEEVDTVSPSSGSTSTST----STPQPFDEIVSFLPLPPPPLSLLHFPNSSC 65
           V Y  S S++E + V+       T        P P ++    LP+P   LS+  FP++  
Sbjct: 7   VGYSSSGSEDEAEAVAAGRSKPGTGFHRCGQNPVPSEK----LPVPDSVLSM--FPST-- 66

Query: 66  TVLDELPIDQVT----RVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPAL 125
              +E P D       R+R+FPH +GN+A H+YIP     + R  +   L +    VP L
Sbjct: 67  ---EEGPEDDSAKHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRL 126

Query: 126 HLVDIDVPLDVLCKDDLKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYW 185
            L++                     EFH+SLS+++ +R H I   V +L+ ++ S +R++
Sbjct: 127 VLME---------------------EFHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFF 186

Query: 186 IDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISF 245
              ++ + + N + +RTF+ +E ++ G  +    +  V+   K  +L  FY++   HIS 
Sbjct: 187 FTANRVKIYTNQEKTRTFIGLE-VSSGHAQFLDLVSEVDRAMKEFDLTTFYQDPSFHISL 246

Query: 246 VWALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKI 289
            W +GD S  L      EL+    +      +     N + CK G K + +
Sbjct: 247 AWCVGDASLQLEGQCLQELQEIVDEFEDSEMLLRVLANQVRCKSGNKFFSM 264

[Close]

BLAST of ClCG01G004820 vs. Swiss-Prot
Match: USB1_DANRE (U6 snRNA phosphodiesterase OS=Danio rerio GN=usb1 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-20
Identity = 86/293 (29.35%), Postives = 132/293 (45.05%), Query Frame = 1


Query: 6   VSYGGSSSDEEV-DTVSPSSGSTSTSTSTPQPFD---------EIVSFLPLPPPPLSLLH 65
           V+Y  SSS+EE   + SPS       T T +  D         +     P  P P S+  
Sbjct: 3   VNYSSSSSEEESGSSSSPSGKRQKLDTETSEALDHGSAQRKVCKSSHLTPRLPLPESVKE 62

Query: 66  FPNSSCTVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVP 125
               S  +  +   +   R+RSF H +GN+A +++ P Y P  A  EV   L K+ +   
Sbjct: 63  MFRDSEELWTDKSEEHGGRLRSFQHERGNWATYVFFP-YDPEEAFLEV---LNKMMAAAE 122

Query: 126 ALHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRR 185
           A      D+PL V            + EFH+SLS+T+ +R H I   V  +R  L   ++
Sbjct: 123 AH-----DIPLTV------------SEEFHLSLSKTVVLRHHWIQPFVQSIRTSLTHFQK 182

Query: 186 YWIDFSKWETFVNDDLSRTFLSMEIITGG--LMEIRRQIQVVNEVYKLHNLPEFYKEARP 245
           ++    K + + N + +RTFL ME+ TG   L+E+    ++V+E  K  NL  FY++   
Sbjct: 183 FYCVAYKLKVYSNAEKTRTFLGMEVSTGTPHLLELS---KIVDETMKEFNLSTFYEDPSF 242

Query: 246 HISFVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLY 287
           HIS  W +GD ++ L +A   EL+                 N + CK G K++
Sbjct: 243 HISLAWCVGDQTERLKKACLLELQGLIDAHEDGPFHARLNCNELRCKTGNKVF 271

[Close]

BLAST of ClCG01G004820 vs. Swiss-Prot
Match: USB1_RAT (U6 snRNA phosphodiesterase OS=Rattus norvegicus GN=Usb1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.3e-18
Identity = 72/292 (24.66%), Postives = 129/292 (44.18%), Query Frame = 1


Query: 6   VSYGGSSSDEEVDTVS-----PSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 65
           V Y  S S++E + V+     P SG      + P P        P+P   L++  FP++ 
Sbjct: 7   VGYSSSGSEDEAEAVAAGRSKPGSGLHRCGQN-PLPSQRF----PVPDSVLNM--FPST- 66

Query: 66  CTVLDELPIDQVTR----VRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPA 125
               +E P D   R    +R+FPH +GN+A H+YIP       +  + + L +     P 
Sbjct: 67  ----EEGPEDDSARHGGRIRTFPHERGNWATHIYIPYEANEEFQDLLDVLLPRAQMFAPR 126

Query: 126 LHLVDIDVPLDVLCKDDLKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRY 185
           L                +++E     EFH+SLS+++ +R H I   V +L+ ++ S +R+
Sbjct: 127 L----------------VQME-----EFHLSLSQSVVLRHHWILPFVQVLKDRMASFQRF 186

Query: 186 WIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHIS 245
           +   ++ + + N + +RTF+ +E ++ G  +    +  V+ V K  +L  FY++   H+S
Sbjct: 187 FFTANRVKIYTNQEKTRTFIGLE-VSSGHAQFLDMVSEVDRVMKEFDLTTFYQDPSFHVS 246

Query: 246 FVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKI 289
             W +GD    L      EL+    +      +       + CK G K + +
Sbjct: 247 LAWCVGDARLQLEGQCQQELQEIVDEFEDSEMLLRVLAEQVRCKSGNKFFSM 264

[Close]

BLAST of ClCG01G004820 vs. Swiss-Prot
Match: USB1_BOVIN (U6 snRNA phosphodiesterase OS=Bos taurus GN=USB1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-17
Identity = 80/292 (27.40%), Postives = 128/292 (43.84%), Query Frame = 1


Query: 6   VSYGGSSSDEEVDT---VSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLH-FPNSSC 65
           V Y  S S++E +    V P +   S   S P P   +       P P S+LH FP++  
Sbjct: 7   VGYSSSGSEDEAEAGARVRPGAEGRSRGQS-PLPGQRL-------PVPDSVLHMFPST-- 66

Query: 66  TVLDELPIDQVT----RVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPAL 125
              +E P+D       RVR+FPH +GN+A H    VY+P  AR+E              L
Sbjct: 67  ---EEGPVDDSAKHGGRVRTFPHERGNWATH----VYIPYEAREEF-------------L 126

Query: 126 HLVDIDVPLDVLCKDDLKLEQALTRE-FHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRY 185
            L+D      +LC     + + +  E FH+SLS+++ +R H I   V  L+ ++ S  R+
Sbjct: 127 DLLDA-----LLCHAQTYVPRLVRMEAFHLSLSQSVVLRHHWILPFVQALKDRVASFHRF 186

Query: 186 WIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHIS 245
                + + + N + +RTF+ +E +T G       +  V+ V +  +L  FY++   HIS
Sbjct: 187 CFTTDQVKIYTNQEKTRTFVGLE-VTSGHAHFLDLVAEVDRVMEEFDLSTFYQDPSFHIS 246

Query: 246 FVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKI 289
             W +GD    +      EL+    +      +       I CK G K + +
Sbjct: 247 LAWCVGDARLQMEGPCLQELQGIVDEFEDSEMLLRAYAEQIRCKSGNKFFSM 262

[Close]

BLAST of ClCG01G004820 vs. Swiss-Prot
Match: USB1_XENLA (U6 snRNA phosphodiesterase OS=Xenopus laevis GN=usb1 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.3e-17
Identity = 86/292 (29.45%), Postives = 128/292 (43.84%), Query Frame = 1


Query: 6   VSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSSCTVLD 65
           VSY  S  DE         G TS       P        PLPPP   L  F +       
Sbjct: 4   VSYSSSEEDE---------GETSEPPGRRLP--------PLPPPTTVLRMFQDME----G 63

Query: 66  ELPIDQVT----RVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLVD 125
           +  +D+ T    R+RSF H +GN+A ++YIP + P         FL  +  LV       
Sbjct: 64  DEDLDENTKHEGRIRSFKHERGNWATYVYIP-FQPQEE------FLDLLDELV------- 123

Query: 126 IDVPLDVLCKDDLKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDFS 185
                 V  ++ + L +    EFHIS S+T+ +R H I+  V  L+ KL    R+     
Sbjct: 124 -----SVAAENGVLLTKM--SEFHISQSQTVVLRHHWINPFVESLKDKLHCMYRFLCIAE 183

Query: 186 KWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEV---YKLHNLPEFYKEARPHISFV 245
           + + + N + +RTFL +E+  G    +   ++VV+EV    +  NL  FY+E   H+S  
Sbjct: 184 RIKVYTNQEKTRTFLGLEVSVG----MEHLLEVVSEVDRSLQEFNLQTFYQEPSFHVSLA 243

Query: 246 WALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNG--IECKIGKKLYKI 289
           W +GD  + L  +   EL++  V +  +     T+FN   I CK G K + I
Sbjct: 244 WCVGDKYEKLKGSCLLELQK--VIDRFEDSDTLTRFNAEEIRCKAGNKTFCI 247

[Close]

BLAST of ClCG01G004820 vs. TrEMBL
Match: A0A0A0KPH5_CUCSA (U6 snRNA phosphodiesterase OS=Cucumis sativus GN=Csa_5G167730 PE=3 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 1.0e-142
Identity = 257/294 (87.41%), Postives = 271/294 (92.18%), Query Frame = 1


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           MDALR SYGGSSSDEEVDTVSP S STS     PQ  DE V+FLPLPPPPLSLL+FPNS+
Sbjct: 1   MDALRASYGGSSSDEEVDTVSPPSASTSA----PQFLDETVTFLPLPPPPLSLLNFPNST 60

Query: 61  CTVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLV 120
           C VLD+LPIDQ TRVRSFPHVQGNYALH+YIPVYVPTNARKEVALF+KK+SSLVPALHLV
Sbjct: 61  C-VLDDLPIDQATRVRSFPHVQGNYALHVYIPVYVPTNARKEVALFMKKISSLVPALHLV 120

Query: 121 DIDVPLDVLCKDDLKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDF 180
           DID+PLDVLCKDD KLEQA  REFHISLSRT+ IRVHQIDSIVTMLRQKLQS RRYWIDF
Sbjct: 121 DIDIPLDVLCKDDQKLEQAWAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSPRRYWIDF 180

Query: 181 SKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVWA 240
           SKWETFVNDDLSRTFLSMEIITGGLMEIR+QIQVVNEVYKLHNLPEFYKEARPHIS  WA
Sbjct: 181 SKWETFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNLPEFYKEARPHISVAWA 240

Query: 241 LGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPDE 295
           LGD+S+L SQAVHNELKRSAVKE  KRCIF+TKFNGIECKIGKK+YKICKFPDE
Sbjct: 241 LGDVSQLSSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKKMYKICKFPDE 289

[Close]

BLAST of ClCG01G004820 vs. TrEMBL
Match: A0A067JR57_JATCU (U6 snRNA phosphodiesterase OS=Jatropha curcas GN=JCGZ_26321 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.5e-96
Identity = 184/296 (62.16%), Postives = 226/296 (76.35%), Query Frame = 1


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTS-TSTSTPQPFDEIVSFLPLPPPPLSLLHFPNS 60
           M+AL  SYG +SSD + DT  P++ +T     S  Q   EIV+   LPPPP+SLL  PNS
Sbjct: 1   MEALIASYGDASSDSDSDTALPTTATTELVPISNAQA--EIVA---LPPPPISLLTPPNS 60

Query: 61  SCTVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHL 120
               LD L   Q +R+RSFPHV+GNYALH+YIPVY+P  ++KE+  FLK+VSSLV  LH+
Sbjct: 61  -IGALDYLQAGQSSRLRSFPHVEGNYALHVYIPVYIPPASKKEIVRFLKRVSSLVSGLHV 120

Query: 121 VDIDVPLDVLCKDDLKLEQ-ALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWI 180
           VD DVPLD+LCKDD KLEQ AL REFHISL RT+ IRVHQIDS++TML Q+LQ Q+RYWI
Sbjct: 121 VDADVPLDILCKDDQKLEQVALGREFHISLGRTVPIRVHQIDSVITMLHQRLQFQKRYWI 180

Query: 181 DFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFV 240
           DFSKW  FVNDD +R+FLS+E++TGGL EI +QIQ VNEVYKLHNLPEFYK+ RPHIS  
Sbjct: 181 DFSKWAVFVNDDQTRSFLSIEVVTGGLTEITKQIQSVNEVYKLHNLPEFYKDPRPHISLA 240

Query: 241 WALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPDE 295
           WALGD+S  L + V  E+KR  +  S+++ IF+ KF+GI+C+IG K YKICKF DE
Sbjct: 241 WALGDISDSLKRVVEEEIKRPGIGGSVQKRIFTCKFSGIDCRIGNKTYKICKFYDE 290

[Close]

BLAST of ClCG01G004820 vs. TrEMBL
Match: B9ICF1_POPTR (U6 snRNA phosphodiesterase OS=Populus trichocarpa GN=POPTR_0015s12330g PE=3 SV=2)

HSP 1 Score: 354.8 bits (909), Expect = 1.0e-94
Identity = 179/295 (60.68%), Postives = 221/295 (74.92%), Query Frame = 1


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           M+ LR SYG +SSD + D+ SP +  +    S P+        + LPPPPL+LL  PN  
Sbjct: 1   MEILRASYGDASSDSDSDSSSPPTTKSVPPVSNPK-----AEAIALPPPPLALLTPPNP- 60

Query: 61  CTVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLV 120
              LD +   Q +R+RSFPHVQGNYALH+YIPV +P   +KEV  FL ++S +VP LH+V
Sbjct: 61  LGALDSMLNGQSSRIRSFPHVQGNYALHVYIPVNIPPALKKEVVQFLNRISLVVPGLHVV 120

Query: 121 DIDVPLDVLCKDDLKLEQ-ALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWID 180
           D DVPLD+LCKDD KLEQ AL R+FHISL RT+ IRVHQIDS+V MLRQKLQ Q+ YWID
Sbjct: 121 DADVPLDILCKDDHKLEQVALGRDFHISLGRTVPIRVHQIDSVVAMLRQKLQFQKGYWID 180

Query: 181 FSKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVW 240
           F+KWE FVNDD +RTFLS+E++TGGL EI +QIQ VN+VYKLHNLPEFYK+ RPHIS  W
Sbjct: 181 FNKWEVFVNDDKTRTFLSLEVVTGGLAEITKQIQSVNDVYKLHNLPEFYKDPRPHISLAW 240

Query: 241 ALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPDE 295
           ALGD+S +L + V NE+KRS+   S+ + +FS KF+GIEC+IGKK YKI KF DE
Sbjct: 241 ALGDVSDVLKREVVNEMKRSSAGGSILKRVFSCKFSGIECRIGKKTYKISKFLDE 289

[Close]

BLAST of ClCG01G004820 vs. TrEMBL
Match: M5X1N9_PRUPE (U6 snRNA phosphodiesterase OS=Prunus persica GN=PRUPE_ppa009680mg PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.0e-94
Identity = 182/294 (61.90%), Postives = 222/294 (75.51%), Query Frame = 1


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           M+AL  SYG SSSD + ++ +P     ++  S+            LPPPPLSLL+ PNS 
Sbjct: 1   MEALIASYGDSSSDSDSESPAPRPELKNSEESSSA----------LPPPPLSLLNSPNSF 60

Query: 61  CTVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLV 120
              LD  P  Q +RVR+FPHV+GNYA+H+YIPVY+P   RKE+ALFL K++SLVP LH V
Sbjct: 61  -GFLDFSPSAQPSRVRNFPHVEGNYAVHVYIPVYIPPAPRKEMALFLNKLASLVPGLHAV 120

Query: 121 DIDVPLDVLCKDDLKLEQ-ALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWID 180
           D+DVPL++LCKD+ KLEQ AL REFHISL RT+ IRVHQIDS+VTMLRQKLQ QRRYWID
Sbjct: 121 DVDVPLEILCKDEHKLEQVALGREFHISLGRTVPIRVHQIDSLVTMLRQKLQIQRRYWID 180

Query: 181 FSKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVW 240
           FSKWE FVNDD +RTF+S+E+I  GL EI +QIQ VNEVYKLHNLPEFYK+ RPHIS  W
Sbjct: 181 FSKWEVFVNDDHTRTFVSIEVIAAGLAEITKQIQAVNEVYKLHNLPEFYKDPRPHISVAW 240

Query: 241 ALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPD 294
           A  D+S  L QAV  E +R  V  SL++C+F++KFNGIEC+IG K +KICKF +
Sbjct: 241 ASDDISSSLKQAVEEE-RRCTVGGSLQKCLFTSKFNGIECRIGSKTHKICKFSE 282

[Close]

BLAST of ClCG01G004820 vs. TrEMBL
Match: A5BG02_VITVI (U6 snRNA phosphodiesterase OS=Vitis vinifera GN=VIT_16s0039g02680 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.3e-94
Identity = 183/298 (61.41%), Postives = 221/298 (74.16%), Query Frame = 1


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           MDALR SY  S SD E D+ +P   + +   S P           LPPPPL+LL  PNS 
Sbjct: 1   MDALRASYANSCSDSESDSDTPRPTNENHQASGP-----------LPPPPLALLSPPNS- 60

Query: 61  CTVLDELPIDQVT---RVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPAL 120
              L EL   Q     RVRSFPHV+GNYALH++IPVY+P++ +KE+  +LKKV SLVP L
Sbjct: 61  ---LGELNYSQTAQSGRVRSFPHVEGNYALHVFIPVYIPSSPKKELVQYLKKVMSLVPGL 120

Query: 121 HLVDIDVPLDVLCKDDLKLEQ-ALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRY 180
           H+VD+D+PL++LCKDD KLEQ AL REFHISL RT+ IRVHQIDSIVTMLRQKLQ QRRY
Sbjct: 121 HVVDVDIPLNILCKDDNKLEQVALGREFHISLGRTVPIRVHQIDSIVTMLRQKLQFQRRY 180

Query: 181 WIDFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHIS 240
           WIDF+KWE FVNDD +R+FLS+E+I GGL EI RQIQ VNEVY+LHNLPEFY++ RPHIS
Sbjct: 181 WIDFNKWEVFVNDDQTRSFLSVEVIAGGLAEITRQIQAVNEVYRLHNLPEFYEDPRPHIS 240

Query: 241 FVWALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPDE 295
            VWALG++S  L +AV    +   V  S+++ IF+ KFNGIECKIG K YKICKF ++
Sbjct: 241 LVWALGNISDSLKRAVEEMRRHINVGGSVQKRIFTCKFNGIECKIGNKTYKICKFSED 283

[Close]

BLAST of ClCG01G004820 vs. TAIR10
Match: AT5G51170.1 (AT5G51170.1 unknown protein)

HSP 1 Score: 332.8 bits (852), Expect = 2.1e-91
Identity = 170/294 (57.82%), Postives = 210/294 (71.43%), Query Frame = 1


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           M+ALR SYG SSSD + D +SP+S  T+ S             + LPPPPL+LL    S+
Sbjct: 1   MEALRASYGDSSSDSDTDDLSPASPVTANSGEKDS--------ISLPPPPLALLDSIVST 60

Query: 61  CTVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLV 120
            + LD    +   RVR+FPHV GNYALH+Y+PV +P   +KE+  FLKKV+S+VP LHLV
Sbjct: 61  GS-LDFFSTEPGVRVRNFPHVDGNYALHVYVPVCIPPLPKKEIVCFLKKVASVVPHLHLV 120

Query: 121 DIDVPLDVLCKDDLKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDF 180
           + DVPL +LCKDD K E+AL REFHISL R + +RVHQI+S+++MLRQKLQ Q+RY IDF
Sbjct: 121 EADVPLSILCKDDQKFERALGREFHISLGRNVPLRVHQINSVISMLRQKLQLQKRYLIDF 180

Query: 181 SKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVWA 240
           +KWE FVNDD +R+FLS+EI T GL EI +QI  VNEVYKLHNLPEFYK+ RPHIS VWA
Sbjct: 181 NKWEVFVNDDHTRSFLSLEITTSGLSEISKQIDAVNEVYKLHNLPEFYKDPRPHISLVWA 240

Query: 241 LGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPDE 295
           LGD+   L  AV  EL++      ++  IF++KF GIECKIG K +KICK PDE
Sbjct: 241 LGDIRTSLKGAVDVELRKLRAGGCVQNRIFTSKFCGIECKIGNKTHKICKLPDE 285

[Close]

BLAST of ClCG01G004820 vs. NCBI nr
Match: gi|659073246|ref|XP_008467330.1| (PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo])

HSP 1 Score: 516.9 bits (1330), Expect = 2.3e-143
Identity = 259/294 (88.10%), Postives = 273/294 (92.86%), Query Frame = 1


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           MDALR SYGGSSSDEEVDTVSPSS STST    PQ FDE VS LPLPPPPLSLL+FPNS+
Sbjct: 1   MDALRASYGGSSSDEEVDTVSPSSASTST----PQFFDETVSSLPLPPPPLSLLNFPNST 60

Query: 61  CTVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLV 120
           C VLD+LPIDQ TRVRSFPHVQGNYALH+YIPVYVPTNARKEVALF+KK+SSLVPALHLV
Sbjct: 61  C-VLDDLPIDQATRVRSFPHVQGNYALHVYIPVYVPTNARKEVALFMKKISSLVPALHLV 120

Query: 121 DIDVPLDVLCKDDLKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDF 180
           DID+PLDVLCKDD KLEQAL REFHISLSRT+ IRVHQIDSIVTMLRQKLQS RRYWIDF
Sbjct: 121 DIDIPLDVLCKDDHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSPRRYWIDF 180

Query: 181 SKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVWA 240
           SKWETFVNDDLSRTFLSMEIITGGLMEIR+QIQVVNEVYKLHNLPEFYKEARPHIS  WA
Sbjct: 181 SKWETFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNLPEFYKEARPHISLAWA 240

Query: 241 LGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPDE 295
           LGD+S++ SQAVHNELKRSAVKE  KRCIF+TKFNGIECKIGKK+YKICKF DE
Sbjct: 241 LGDVSQISSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKKMYKICKFADE 289

[Close]

BLAST of ClCG01G004820 vs. NCBI nr
Match: gi|449451850|ref|XP_004143673.1| (PREDICTED: U6 snRNA phosphodiesterase [Cucumis sativus])

HSP 1 Score: 514.2 bits (1323), Expect = 1.5e-142
Identity = 257/294 (87.41%), Postives = 271/294 (92.18%), Query Frame = 1


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           MDALR SYGGSSSDEEVDTVSP S STS     PQ  DE V+FLPLPPPPLSLL+FPNS+
Sbjct: 1   MDALRASYGGSSSDEEVDTVSPPSASTSA----PQFLDETVTFLPLPPPPLSLLNFPNST 60

Query: 61  CTVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLV 120
           C VLD+LPIDQ TRVRSFPHVQGNYALH+YIPVYVPTNARKEVALF+KK+SSLVPALHLV
Sbjct: 61  C-VLDDLPIDQATRVRSFPHVQGNYALHVYIPVYVPTNARKEVALFMKKISSLVPALHLV 120

Query: 121 DIDVPLDVLCKDDLKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDF 180
           DID+PLDVLCKDD KLEQA  REFHISLSRT+ IRVHQIDSIVTMLRQKLQS RRYWIDF
Sbjct: 121 DIDIPLDVLCKDDQKLEQAWAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSPRRYWIDF 180

Query: 181 SKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVWA 240
           SKWETFVNDDLSRTFLSMEIITGGLMEIR+QIQVVNEVYKLHNLPEFYKEARPHIS  WA
Sbjct: 181 SKWETFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNLPEFYKEARPHISVAWA 240

Query: 241 LGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPDE 295
           LGD+S+L SQAVHNELKRSAVKE  KRCIF+TKFNGIECKIGKK+YKICKFPDE
Sbjct: 241 LGDVSQLSSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKKMYKICKFPDE 289

[Close]

BLAST of ClCG01G004820 vs. NCBI nr
Match: gi|568863134|ref|XP_006485013.1| (PREDICTED: U6 snRNA phosphodiesterase [Citrus sinensis])

HSP 1 Score: 366.7 bits (940), Expect = 3.8e-98
Identity = 183/295 (62.03%), Postives = 227/295 (76.95%), Query Frame = 1


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           M+AL  SYG SSSD + +  +PS+   ++S+S P+  +     LPLPPPPLSL++ PNS 
Sbjct: 11  MEALLASYGDSSSDSDTERGNPSNSGINSSSSQPETTN-----LPLPPPPLSLVNPPNSL 70

Query: 61  CTVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLV 120
            ++   LP  Q +RVR+FPHV+GNYALH+YIPV +P   +KE+A FLK+VSS++P +++V
Sbjct: 71  GSIDHHLPTGQPSRVRNFPHVEGNYALHVYIPVLIPLAPKKELAQFLKRVSSILPGIYVV 130

Query: 121 DIDVPLDVLCKDDLKLEQ-ALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWID 180
           D+DVP   L KDD +LEQ A  REFHISL RT+ IRVHQIDSIV MLRQ+LQSQRRYWID
Sbjct: 131 DVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWID 190

Query: 181 FSKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVW 240
           FSKWE FVNDD +RTFLS+E+ITGGL+EI +QIQVVNEVY+LHNLPEFYK+ RPHIS  W
Sbjct: 191 FSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAW 250

Query: 241 ALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPDE 295
            LGD+S  L + V  E+KR +V+ SL +  FS KF GI CKIGKK YKICKF  E
Sbjct: 251 LLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKFSGE 300

[Close]

BLAST of ClCG01G004820 vs. NCBI nr
Match: gi|729406920|ref|XP_010555597.1| (PREDICTED: U6 snRNA phosphodiesterase [Tarenaya hassleriana])

HSP 1 Score: 360.5 bits (924), Expect = 2.7e-96
Identity = 179/294 (60.88%), Postives = 222/294 (75.51%), Query Frame = 1


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTSTSTSTPQPFDEIVSFLPLPPPPLSLLHFPNSS 60
           M+AL  SYG +SS+ + D +SP  G  ST        DE  S   LPPPPLSLL+ PNSS
Sbjct: 1   MEALIASYGDASSESDSDDLSPHPGGKSTVGK-----DETESSFSLPPPPLSLLNPPNSS 60

Query: 61  CTVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHLV 120
            ++ D LP +   RVRSFPHV+GNYALH+YIPV +P+ A+KE+A FLK+V+S VP LHLV
Sbjct: 61  VSI-DFLPAESAIRVRSFPHVEGNYALHVYIPVSLPSTAKKEIACFLKRVASAVPDLHLV 120

Query: 121 DIDVPLDVLCKDDLKLEQALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWIDF 180
           + DVP+ +LCKD+ KLE AL REFHISL RT+ IRVHQI+S+V++LRQKLQ Q+RYW+DF
Sbjct: 121 EADVPVSILCKDEHKLEHALGREFHISLGRTVPIRVHQINSVVSLLRQKLQFQKRYWMDF 180

Query: 181 SKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFVWA 240
           SKWE FVNDD +R+FLS+EI T G+ EI +QI  VN+VYKLHNLPEFYK+ RPHIS +WA
Sbjct: 181 SKWEVFVNDDCTRSFLSLEITTAGVAEITKQIHAVNDVYKLHNLPEFYKDPRPHISLLWA 240

Query: 241 LGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPDE 295
           LGD+S  L  AV  ELK+      ++  IF++KF GIEC+IG K YKIC FPDE
Sbjct: 241 LGDISNSLKGAVEGELKKLKAGACVQNRIFTSKFCGIECRIGNKAYKICSFPDE 288

[Close]

BLAST of ClCG01G004820 vs. NCBI nr
Match: gi|802770042|ref|XP_012090524.1| (PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas])

HSP 1 Score: 360.1 bits (923), Expect = 3.6e-96
Identity = 184/296 (62.16%), Postives = 226/296 (76.35%), Query Frame = 1


Query: 1   MDALRVSYGGSSSDEEVDTVSPSSGSTS-TSTSTPQPFDEIVSFLPLPPPPLSLLHFPNS 60
           M+AL  SYG +SSD + DT  P++ +T     S  Q   EIV+   LPPPP+SLL  PNS
Sbjct: 1   MEALIASYGDASSDSDSDTALPTTATTELVPISNAQA--EIVA---LPPPPISLLTPPNS 60

Query: 61  SCTVLDELPIDQVTRVRSFPHVQGNYALHLYIPVYVPTNARKEVALFLKKVSSLVPALHL 120
               LD L   Q +R+RSFPHV+GNYALH+YIPVY+P  ++KE+  FLK+VSSLV  LH+
Sbjct: 61  -IGALDYLQAGQSSRLRSFPHVEGNYALHVYIPVYIPPASKKEIVRFLKRVSSLVSGLHV 120

Query: 121 VDIDVPLDVLCKDDLKLEQ-ALTREFHISLSRTMAIRVHQIDSIVTMLRQKLQSQRRYWI 180
           VD DVPLD+LCKDD KLEQ AL REFHISL RT+ IRVHQIDS++TML Q+LQ Q+RYWI
Sbjct: 121 VDADVPLDILCKDDQKLEQVALGREFHISLGRTVPIRVHQIDSVITMLHQRLQFQKRYWI 180

Query: 181 DFSKWETFVNDDLSRTFLSMEIITGGLMEIRRQIQVVNEVYKLHNLPEFYKEARPHISFV 240
           DFSKW  FVNDD +R+FLS+E++TGGL EI +QIQ VNEVYKLHNLPEFYK+ RPHIS  
Sbjct: 181 DFSKWAVFVNDDQTRSFLSIEVVTGGLTEITKQIQSVNEVYKLHNLPEFYKDPRPHISLA 240

Query: 241 WALGDLSKLLSQAVHNELKRSAVKESLKRCIFSTKFNGIECKIGKKLYKICKFPDE 295
           WALGD+S  L + V  E+KR  +  S+++ IF+ KF+GI+C+IG K YKICKF DE
Sbjct: 241 WALGDISDSLKRVVEEEIKRPGIGGSVQKRIFTCKFSGIDCRIGNKTYKICKFYDE 290

The following BLAST results are available for this feature:

BLAST of ClCG01G004820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
USB1_MOUSE	7.6e-22	26.12	U6 snRNA phosphodiesterase OS=Mus musculus GN=Usb1 PE=2 SV=1	[more]
USB1_DANRE	4.2e-20	29.35	U6 snRNA phosphodiesterase OS=Danio rerio GN=usb1 PE=2 SV=1	[more]
USB1_RAT	2.3e-18	24.66	U6 snRNA phosphodiesterase OS=Rattus norvegicus GN=Usb1 PE=2 SV=1	[more]
USB1_BOVIN	3.3e-17	27.40	U6 snRNA phosphodiesterase OS=Bos taurus GN=USB1 PE=2 SV=1	[more]
USB1_XENLA	4.3e-17	29.45	U6 snRNA phosphodiesterase OS=Xenopus laevis GN=usb1 PE=2 SV=1	[more]

BLAST of ClCG01G004820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPH5_CUCSA	1.0e-142	87.41	U6 snRNA phosphodiesterase OS=Cucumis sativus GN=Csa_5G167730 PE=3 SV=1	[more]
A0A067JR57_JATCU	2.5e-96	62.16	U6 snRNA phosphodiesterase OS=Jatropha curcas GN=JCGZ_26321 PE=3 SV=1	[more]
B9ICF1_POPTR	1.0e-94	60.68	U6 snRNA phosphodiesterase OS=Populus trichocarpa GN=POPTR_0015s12330g PE=3 SV=2	[more]
M5X1N9_PRUPE	1.0e-94	61.90	U6 snRNA phosphodiesterase OS=Prunus persica GN=PRUPE_ppa009680mg PE=3 SV=1	[more]
A5BG02_VITVI	2.3e-94	61.41	U6 snRNA phosphodiesterase OS=Vitis vinifera GN=VIT_16s0039g02680 PE=3 SV=1	[more]

BLAST of ClCG01G004820 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51170.1	2.1e-91	57.82	unknown protein	[more]

BLAST of ClCG01G004820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073246\|ref\|XP_008467330.1\|	2.3e-143	88.10	PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo]	[more]
gi\|449451850\|ref\|XP_004143673.1\|	1.5e-142	87.41	PREDICTED: U6 snRNA phosphodiesterase [Cucumis sativus]	[more]
gi\|568863134\|ref\|XP_006485013.1\|	3.8e-98	62.03	PREDICTED: U6 snRNA phosphodiesterase [Citrus sinensis]	[more]
gi\|729406920\|ref\|XP_010555597.1\|	2.7e-96	60.88	PREDICTED: U6 snRNA phosphodiesterase [Tarenaya hassleriana]	[more]
gi\|802770042\|ref\|XP_012090524.1\|	3.6e-96	62.16	PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027521	Usb1

Vocabulary: **Molecular Function**
Term	Definition
GO:0004518	nuclease activity

Vocabulary: **Biological Process**
Term	Definition
GO:0034477	U6 snRNA 3'-end processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0008380	RNA splicing
biological_process	GO:0034477	U6 snRNA 3'-end processing
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0000175	3'-5'-exoribonuclease activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G004820.1	ClCG01G004820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027521	U6 snRNA phosphodiesterase Usb1	HAMAP	MF_03040	USB1	coord: 3..291 score: 27
IPR027521	U6 snRNA phosphodiesterase Usb1	PANTHER	PTHR13522	UNCHARACTERIZED	coord: 2..293 score: 2.2
IPR027521	U6 snRNA phosphodiesterase Usb1	PFAM	PF09749	HVSL	coord: 47..288 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G004820	Csa5G167730	Cucumber (Chinese Long) v2	cuwcgB364
ClCG01G004820	MELO3C005454	Melon (DHL92) v3.5.1	mewcgB019
ClCG01G004820	Cla003606	Watermelon (97103) v1	wcgwmB154
ClCG01G004820	Cla97C01G005030	Watermelon (97103) v2	wcgwmbB089
ClCG01G004820	CSPI05G07590	Wild cucumber (PI 183967)	cpiwcgB379
ClCG01G004820	Cucsa.129190	Cucumber (Gy14) v1	cgywcgB211
ClCG01G004820	CmaCh15G013680	Cucurbita maxima (Rimu)	cmawcgB256
ClCG01G004820	CmoCh15G014300	Cucurbita moschata (Rifu)	cmowcgB244
ClCG01G004820	Lsi09G005040	Bottle gourd (USVL1VR-Ls)	lsiwcgB008
ClCG01G004820	Cp4.1LG13g00810	Cucurbita pepo (Zucchini)	cpewcgB168
ClCG01G004820	CsGy5G005060	Cucumber (Gy14) v2	cgybwcgB332
ClCG01G004820	MELO3C005454.2	Melon (DHL92) v3.6.1	medwcgB017
ClCG01G004820	Carg20821	Silver-seed gourd	carwcgB1008
ClCG01G004820	CsaV3_5G005020	Cucumber (Chinese Long) v3	cucwcgB385

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G004820	Melon (DHL92) v3.6.1	medwcgB010
ClCG01G004820	Melon (DHL92) v3.6.1	medwcgB464
ClCG01G004820	Silver-seed gourd	carwcgB0367
ClCG01G004820	Silver-seed gourd	carwcgB0688
ClCG01G004820	Cucumber (Chinese Long) v3	cucwcgB297
ClCG01G004820	Watermelon (97103) v2	wcgwmbB117
ClCG01G004820	Wax gourd	wcgwgoB193
ClCG01G004820	Wax gourd	wcgwgoB212
ClCG01G004820	Watermelon (Charleston Gray)	wcgwcgB108
ClCG01G004820	Cucumber (Gy14) v1	cgywcgB115
ClCG01G004820	Cucurbita maxima (Rimu)	cmawcgB519
ClCG01G004820	Cucurbita maxima (Rimu)	cmawcgB637
ClCG01G004820	Cucurbita moschata (Rifu)	cmowcgB287
ClCG01G004820	Cucurbita moschata (Rifu)	cmowcgB517
ClCG01G004820	Cucurbita moschata (Rifu)	cmowcgB639
ClCG01G004820	Wild cucumber (PI 183967)	cpiwcgB298
ClCG01G004820	Cucumber (Chinese Long) v2	cuwcgB287
ClCG01G004820	Melon (DHL92) v3.5.1	mewcgB470
ClCG01G004820	Watermelon (97103) v1	wcgwmB128
ClCG01G004820	Cucurbita pepo (Zucchini)	cpewcgB372
ClCG01G004820	Cucurbita pepo (Zucchini)	cpewcgB640
ClCG01G004820	Bottle gourd (USVL1VR-Ls)	lsiwcgB393
ClCG01G004820	Cucumber (Gy14) v2	cgybwcgB266