ClCG01G004200 (gene) Watermelon (Charleston Gray)

NameClCG01G004200
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 4522038 .. 4524548 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCATACTTCCTAGTTCCTAAGAGTAAGACTAGCTAAATTGAACTATATCAGTCACCATTCACCAACCATGCAAATTCTCTTCCTATAAATCTTGCTTTTGTCAAGGTCCAATACATTTCATGCTTCTTAATTATTATTATTTGTCCCAGAAGTACTAGGTCATTAATATTCTTTTTTTTTTTTAATTTCATTGATTTTCATTTCTCTATTAAAAAAGTTTAAATTTGTAGTCTCATCTTGCAAAGTTACTAATCCATTCTTAGTATTGCTAATGAATGGTATTGAAGAGTCTCCCTCCATGCATATATGTCACTACAAAGAAAATTTAGTTCTGCCGACACAAAAAAAATGTATAGACAAAAATGCACTTTGTCGACAGCAAAAATTGCAATGCAAAAAGAGCTATGTGAATATTGTTGATTATTTTATAAATGGATATTGTTTTATAGGTTATTTTCTATATTATTTTATAGGTTATTTTCTATCTTTATAGATGAATATTGTCGATTAATATCATTGTTATTGTTGTGTATGTTGGAGTAAATTTTTTTTGTTGTATTAGATTTATATTTAAAATTATAGAAATGGAGTTATTGATTTGATAGTTTATTTATAAGTTTAAGATTTATATATATGTGTTATATAAAGTCTTAAATGTGGGGTAAAGTGCATGCAAGTTGAGATATTATTTGTCTTAAATTTAGTGTAAGATGTTGTTTGATGGTTTATTTATTAAATTTAGATTTATGTTGCATATTCGTCTTAAATATATGGGTGATAAACTCGAGTGAGATCGTTTCAATATTTAAAATTATTGTTGCTCTTCTATAAACTAGTGTTTTTCCTCGTGTAGTTTTCTTTAAAAGAAATGAAATACATCCATTTTCAATAATCTGGATAAACTACAATGTAATAGATTTATTTTAAATTTTAGTTAGATTAATTGTATATATTTTTACAATATATTAATATTTATTTTGTAACATGATATAGTTATTGTGGGTATAATTTTAATCTAACTAATTTAATAATTATTTTCTAATAATGGTTTAACTAAATGTTTTTTTAGTACATATTAAATATATGTGGGAAGATCTCACTTTTAAATGGATAAAAATAAATTTATTATTTAATTTTCAAGTACATTTTTGTTTAACAACTTTATCGCTGTGTTGCACATTATGTATATTTTTACTTTATTTTATATTATAAAAAGAAATTGTAGTTTCATTTACTATGAGTGTTGCGAATTTTTTTTTAAAATAATGGTTTTTTAAAAAAGAATTCGAAAAATAGGGTGGGGGAGAAAGAATTTGGAAAAATAGGGTGGGGGAGAAAGAATTTTGAAGAATAGGGTTGTGAAATCGTGGACCCGGTCCACGATTTTGTGAAATCGTGGACCGGGTCCACGATTTCCAGGGTACGCTGACACCGGCAGTCTGCATGCATTGACCGAACTCGTGGACGGGGTCCACGAGTTCCTCACTTTAAAATCCGACCGGCAGCCTCTCATTTCCACCTCCTTCCTCTCATTTCCACCTCCACCATCTTCATTTCTCTCTTTTCATTCTTCATTTCTCTCCTCATCTCTCTCCTTTCACTCTTCATTTCTTTCCTCCTTTCTCTCCTTTCTCTTATTTCAGTTCTCGTTTGTCATTGTCGCTGTCAATTTTCTTCTTCTTTTCGTTCCGCCGCCGCCGCCGCCTCCACTGCCGCCGCCGCCGCCATATACGTATGCATATACATTTTCCTTTCTAATTATCTTATAAATATGCAATAGTTATATACGTTTTGTTTTGCATGAATGAATAAATTTGTATATGTATACGTTTTGTTTTGCATGAATGAACAAATTTAAATATGTATACCCTATTTTTCGAATTTTTTTTTTAGAATAACATTATTCTTTAAAATACCCCTTTTGCATGCATGAATAAATTTAAAAAATTAAGGTTTTAGTATTGATTATTATTCGGCGTTTATTGTTATAAGAATAATTATTGGTAAATAATATGGTGGAAAATTAGTTATATTGGGTAGTAAACTCGTGGACCGGGTCCACGAGTTTATAATTTTGGGTAGATTTGGACTAATTTTTCTTTTTAACCTTTACAGTTGTAAACGAATTTAAATATGTCGTTTCGTCCAGAAGATTTAGTTATTATTGAAGCTGGAAATTGTGCGGATAGTGACATTGATGTAGAAATTGATGAATTGTTTGGAGAAGAAGGAAATATAGAAAATGAAAATGAGTTGGTTCAGTCGGAGATATTTACACAGATAGAATGGGAAATTACTGATTCAGTTTGTGAACAAGGATCAACCTTGGAGGAAAGGGAAAAATGTACAGATAACTCTAGTATAATACAAAAAGGAATGTTATTTGATACGAAAGAAGACCTACAAATGGCAGTAAAAAAATATTGTGTGACTGAACACTACCAAATATCTGTGGTAGAATCGAACCAAGATATTTGGTATGTGCGATGCAAGCAATGGGATGAA

mRNA sequence

ATGATTGCATACTTCCTAGTTCCTAAGAGGTACGCTGACACCGGCAGTCTGCATGCATTGACCGAACTCGTGGACGGGTTCTCGTTTGTCATTGTCGCTGTCAATTTTCTTCTTCTTTTCGTTCCGCCGCCGCCGCCGCCTCCACTGCCGCCGCCGCCGCCATATACTGACATTGATGTAGAAATTGATGAATTGTTTGGAGAAGAAGGAAATATAGAAAATGAAAATGAGTTGGTTCAGTCGGAGATATTTACACAGATAGAATGGGAAATTACTGATTCAGTTTGTGAACAAGGATCAACCTTGGAGGAAAGGGAAAAATGTACAGATAACTCTAGTATAATACAAAAAGGAATGTTATTTGATACGAAAGAAGACCTACAAATGGCAGTAAAAAAATATTGTGTGACTGAACACTACCAAATATCTGTGGTAGAATCGAACCAAGATATTTGGTATGTGCGATGCAAGCAATGGGATGAA

Coding sequence (CDS)

ATGATTGCATACTTCCTAGTTCCTAAGAGGTACGCTGACACCGGCAGTCTGCATGCATTGACCGAACTCGTGGACGGGTTCTCGTTTGTCATTGTCGCTGTCAATTTTCTTCTTCTTTTCGTTCCGCCGCCGCCGCCGCCTCCACTGCCGCCGCCGCCGCCATATACTGACATTGATGTAGAAATTGATGAATTGTTTGGAGAAGAAGGAAATATAGAAAATGAAAATGAGTTGGTTCAGTCGGAGATATTTACACAGATAGAATGGGAAATTACTGATTCAGTTTGTGAACAAGGATCAACCTTGGAGGAAAGGGAAAAATGTACAGATAACTCTAGTATAATACAAAAAGGAATGTTATTTGATACGAAAGAAGACCTACAAATGGCAGTAAAAAAATATTGTGTGACTGAACACTACCAAATATCTGTGGTAGAATCGAACCAAGATATTTGGTATGTGCGATGCAAGCAATGGGATGAA

Protein sequence

MIAYFLVPKRYADTGSLHALTELVDGFSFVIVAVNFLLLFVPPPPPPPLPPPPPYTDIDVEIDELFGEEGNIENENELVQSEIFTQIEWEITDSVCEQGSTLEEREKCTDNSSIIQKGMLFDTKEDLQMAVKKYCVTEHYQISVVESNQDIWYVRCKQWDE
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004332Transposase_MuDR
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G004200.1ClCG01G004200.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004332Transposase, MuDR, plantPFAMPF03108DBD_Tnp_Mutcoord: 115..159
score: 7.
NoneNo IPR availableunknownSSF101447Formin homology 2 domain (FH2 domain)coord: 43..54
score: 1.36E-5coord: 87..100
score: 1.3

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G004200Silver-seed gourdcarwcgB0528
ClCG01G004200Silver-seed gourdcarwcgB0897
ClCG01G004200Cucumber (Chinese Long) v3cucwcgB211
ClCG01G004200Cucumber (Chinese Long) v3cucwcgB385
ClCG01G004200Watermelon (97103) v2wcgwmbB089
ClCG01G004200Watermelon (97103) v2wcgwmbB094
ClCG01G004200Wax gourdwcgwgoB193
ClCG01G004200Wax gourdwcgwgoB213
ClCG01G004200Cucurbita moschata (Rifu)cmowcgB247
ClCG01G004200Cucumber (Gy14) v1cgywcgB211
ClCG01G004200Cucumber (Gy14) v1cgywcgB557
ClCG01G004200Cucurbita maxima (Rimu)cmawcgB259
ClCG01G004200Cucurbita maxima (Rimu)cmawcgB518
ClCG01G004200Cucurbita maxima (Rimu)cmawcgB524
ClCG01G004200Cucurbita maxima (Rimu)cmawcgB733
ClCG01G004200Cucurbita moschata (Rifu)cmowcgB516
ClCG01G004200Cucurbita moschata (Rifu)cmowcgB522
ClCG01G004200Cucurbita moschata (Rifu)cmowcgB737
ClCG01G004200Wild cucumber (PI 183967)cpiwcgB209
ClCG01G004200Wild cucumber (PI 183967)cpiwcgB379
ClCG01G004200Cucumber (Chinese Long) v2cuwcgB207
ClCG01G004200Cucumber (Chinese Long) v2cuwcgB364
ClCG01G004200Melon (DHL92) v3.5.1mewcgB018
ClCG01G004200Melon (DHL92) v3.5.1mewcgB418
ClCG01G004200Watermelon (97103) v1wcgwmB119
ClCG01G004200Watermelon (97103) v1wcgwmB154
ClCG01G004200Cucurbita pepo (Zucchini)cpewcgB165
ClCG01G004200Cucurbita pepo (Zucchini)cpewcgB637
ClCG01G004200Cucurbita pepo (Zucchini)cpewcgB641
ClCG01G004200Cucurbita pepo (Zucchini)cpewcgB780
ClCG01G004200Bottle gourd (USVL1VR-Ls)lsiwcgB008
ClCG01G004200Cucumber (Gy14) v2cgybwcgB332
ClCG01G004200Melon (DHL92) v3.6.1medwcgB016