ClCG01G004180 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G004180
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	60S ribosomal protein L15
Location	CG_Chr01 : 4502739 .. 4503421 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTCAAAACTTTCTGGATCGAAGTAACTTCTCTACTACATTCCCCAACAAACAGAAAGCTCATAATAAAAATAACAAAACAGAGAAAAACAATACCAAAATCAACGATAACGACGCAGGGAGAGAGTGTTGTTCCTCTTCCAGGTTGCTCTGCGAGAAGGCCTGGCTTTGTGGTGCAAGTGTCCTTTTCCTCGAAGTCCCCTATACTTCTTTCCGGCGGATGTAAGTCCTCGGAGCTCCCTGTGCTTGTGCACTGGATTGCAGATCCAGTTGATTCTTGGGTCATTGCGAACTGCATTATGGGCGACGTCGACCAAAATCACCTCATAGTATTTGTAGGTAGAATCCTGTTACAATTTCAAGAACAGTTAGAAAAGTAGGTGAGACAGAATAGTATGCAAGGATTTAAAATGCTGTACACTCAATAATTTCAGATGCACTCATTGCTCCTTGCCTCGAGTTATCTAATGAAAATAAGGAGGTATAGTCAATTACCTCATTGATCCAGTACGAGTTGAGAACCCTCAAACCACCCAACTTTCGCCCTGCTCGTTCTTCTGCAACTGATCGCTTGCTGCGCTGGAACTTCAATTGGGTAACACCTTGGTTGGTTGGCTTTCCATACACAATACCCTTGGGAACCGGCCTCTTCCTACCACCACGTCGCACTCGGACCCTGTAA

mRNA sequence

AAGTTCAAAACTTTCTGGATCGAAGTAACTTCTCTACTACATTCCCCAACAAACAGAAAGCTCATAATAAAAATAACAAAACAGAGAAAAACAATACCAAAATCAACGATAACGACGCAGGGAGAGAGTGTTGTTCCTCTTCCAGGTTGCTCTGCGAGAAGGCCTGGCTTTGTGGTGCAAGTGTCCTTTTCCTCGAAGTCCCCTATACTTCTTTCCGGCGGATGTAAGTCCTCGGAGCTCCCTGTGCTTGTGCACTGGATTGCAGATCCAGTTGATTCTTGGGTCATTGCGAACTGCATTATGGGCGACGTCGACCAAAATCACCTCATAGTATTTGTAGGTAGAATCCTGTTACAATTTCAAGAACAGTTAGAAAAAACCCTCAAACCACCCAACTTTCGCCCTGCTCGTTCTTCTGCAACTGATCGCTTGCTGCGCTGGAACTTCAATTGGGTAACACCTTGGTTGGTTGGCTTTCCATACACAATACCCTTGGGAACCGGCCTCTTCCTACCACCACGTCGCACTCGGACCCTGTAA

Coding sequence (CDS)

AAGTTCAAAACTTTCTGGATCGAAGTAACTTCTCTACTACATTCCCCAACAAACAGAAAGCTCATAATAAAAATAACAAAACAGAGAAAAACAATACCAAAATCAACGATAACGACGCAGGGAGAGAGTGTTGTTCCTCTTCCAGGTTGCTCTGCGAGAAGGCCTGGCTTTGTGGTGCAAGTGTCCTTTTCCTCGAAGTCCCCTATACTTCTTTCCGGCGGATGTAAGTCCTCGGAGCTCCCTGTGCTTGTGCACTGGATTGCAGATCCAGTTGATTCTTGGGTCATTGCGAACTGCATTATGGGCGACGTCGACCAAAATCACCTCATAGTATTTGTAGGTAGAATCCTGTTACAATTTCAAGAACAGTTAGAAAAAACCCTCAAACCACCCAACTTTCGCCCTGCTCGTTCTTCTGCAACTGATCGCTTGCTGCGCTGGAACTTCAATTGGGTAACACCTTGGTTGGTTGGCTTTCCATACACAATACCCTTGGGAACCGGCCTCTTCCTACCACCACGTCGCACTCGGACCCTGTAA

Protein sequence

KFKTFWIEVTSLLHSPTNRKLIIKITKQRKTIPKSTITTQGESVVPLPGCSARRPGFVVQVSFSSKSPILLSGGCKSSELPVLVHWIADPVDSWVIANCIMGDVDQNHLIVFVGRILLQFQEQLEKTLKPPNFRPARSSATDRLLRWNFNWVTPWLVGFPYTIPLGTGLFLPPRRTRTL

Homology

[Close]

BLAST of ClCG01G004180 vs. TrEMBL
Match: F5BZL3_EPIBR (60S ribosomal protein L15 (Fragment) OS=Epinephelus bruneus PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.9e-08
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1


Query: 36  TITTQGESVVPLPGCSARRPGFVVQVSFSSKSPILLSGGCKSSELPVLVHWIADPVDSWV 95
           TIT Q + V PLPGC+A      V++   +++  LLS  C+++ L VLVH + DP+  WV
Sbjct: 7   TITVQLQGVAPLPGCTAGASDGQVELVALAQAAALLSCRCQATHLSVLVHSLCDPLGVWV 66

Query: 96  IANCIMGDVDQNHLIVFVGRIL 118
            ++ ++  VDQNHL   VG +L
Sbjct: 67  ASDGLVEGVDQNHLEELVGGVL 88

[Close]

BLAST of ClCG01G004180 vs. TrEMBL
Match: A0A146NWK8_FUNHE (Uncharacterized protein OS=Fundulus heteroclitus PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 36  TITTQGESVVPLPGCSARRPGFVVQVSFSSKSPILLSGGCKSSELPVLVHWIADPVDSWV 95
           T+  Q + V PLPG +AR     V++   +++  LL+   +++ LPVLVH + DP+  WV
Sbjct: 10  TVAVQLQGVAPLPGSAARASDGQVELVTLAQTTALLACRSQAAHLPVLVHILCDPLGIWV 69

Query: 96  IANCIMGDVDQNHLIVFVGRIL 118
            ++ ++  VDQNHL   VG +L
Sbjct: 70  ASDSLVEGVDQNHLEELVGGVL 91

[Close]

BLAST of ClCG01G004180 vs. TrEMBL
Match: A0A146PPW1_FUNHE (Uncharacterized protein OS=Fundulus heteroclitus PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 36  TITTQGESVVPLPGCSARRPGFVVQVSFSSKSPILLSGGCKSSELPVLVHWIADPVDSWV 95
           T+  Q + V PLPG +AR     V++   +++  LL+   +++ LPVLVH + DP+  WV
Sbjct: 11  TVAVQLQGVAPLPGSAARASDGQVELVTLAQTTALLACRSQAAHLPVLVHILCDPLGIWV 70

Query: 96  IANCIMGDVDQNHLIVFVGRIL 118
            ++ ++  VDQNHL   VG +L
Sbjct: 71  ASDSLVEGVDQNHLEELVGGVL 92

[Close]

BLAST of ClCG01G004180 vs. TrEMBL
Match: A0A146V968_FUNHE (Uncharacterized protein OS=Fundulus heteroclitus PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 36  TITTQGESVVPLPGCSARRPGFVVQVSFSSKSPILLSGGCKSSELPVLVHWIADPVDSWV 95
           T+  Q + V PLPG +AR     V++   +++  LL+   +++ LPVLVH + DP+  WV
Sbjct: 10  TVAVQLQGVAPLPGSAARASDGQVELVTLAQTTALLACRSQAAHLPVLVHILCDPLGIWV 69

Query: 96  IANCIMGDVDQNHLIVFVGRIL 118
            ++ ++  VDQNHL   VG +L
Sbjct: 70  ASDSLVEGVDQNHLEELVGGVL 91

[Close]

BLAST of ClCG01G004180 vs. NCBI nr
Match: gi|2245097|emb|CAB10519.1| (hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 66.6 bits (161), Expect = 5.0e-08
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 1


Query: 50  CSARRPGFVVQVSFSSKSPILLSGGCKSSELPVLVHWIADPVDSWVIANCIMGDVDQNHL 109
           C A R   VV V+ S+K+ ILLS G ++SE  VLVH +ADPVD W+I++ I+  V +++L
Sbjct: 438 CPAGRSVLVVVVTLSTKTTILLSFGGETSEFSVLVHRVADPVDPWIISDGIVCRVYKDNL 497

Query: 110 IVFVGRILLQFQEQLEKTLKP 131
           +V VGR+L + + Q    L P
Sbjct: 498 VVLVGRVLRKPENQTITHLIP 518

[Close]

BLAST of ClCG01G004180 vs. NCBI nr
Match: gi|328677101|gb|AEB31273.1| (60S ribosomal protein L15, partial [Epinephelus bruneus])

HSP 1 Score: 65.9 bits (159), Expect = 8.4e-08
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1


Query: 36  TITTQGESVVPLPGCSARRPGFVVQVSFSSKSPILLSGGCKSSELPVLVHWIADPVDSWV 95
           TIT Q + V PLPGC+A      V++   +++  LLS  C+++ L VLVH + DP+  WV
Sbjct: 7   TITVQLQGVAPLPGCTAGASDGQVELVALAQAAALLSCRCQATHLSVLVHSLCDPLGVWV 66

Query: 96  IANCIMGDVDQNHLIVFVGRIL 118
            ++ ++  VDQNHL   VG +L
Sbjct: 67  ASDGLVEGVDQNHLEELVGGVL 88

The following BLAST results are available for this feature:

BLAST of ClCG01G004180 vs. TrEMBL


Match Name	E-value	Identity	Description
F5BZL3_EPIBR	5.9e-08	41.46	60S ribosomal protein L15 (Fragment) OS=Epinephelus bruneus PE=2 SV=1	[more]
A0A146NWK8_FUNHE	1.4e-06	37.80	Uncharacterized protein OS=Fundulus heteroclitus PE=4 SV=1	[more]
A0A146PPW1_FUNHE	1.4e-06	37.80	Uncharacterized protein OS=Fundulus heteroclitus PE=4 SV=1	[more]
A0A146V968_FUNHE	1.4e-06	37.80	Uncharacterized protein OS=Fundulus heteroclitus PE=4 SV=1	[more]

BLAST of ClCG01G004180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|2245097\|emb\|CAB10519.1\|	5.0e-08	45.68	hypothetical protein [Arabidopsis thaliana]	[more]
gi\|328677101\|gb\|AEB31273.1\|	8.4e-08	41.46	60S ribosomal protein L15, partial [Epinephelus bruneus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G004180.1	ClCG01G004180.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G004180	Cucurbita maxima (Rimu)	cmawcgB733
ClCG01G004180	Cucurbita moschata (Rifu)	cmowcgB516
ClCG01G004180	Cucurbita moschata (Rifu)	cmowcgB522
ClCG01G004180	Cucurbita moschata (Rifu)	cmowcgB737
ClCG01G004180	Wild cucumber (PI 183967)	cpiwcgB379
ClCG01G004180	Cucumber (Chinese Long) v2	cuwcgB207
ClCG01G004180	Cucumber (Chinese Long) v2	cuwcgB364
ClCG01G004180	Melon (DHL92) v3.5.1	mewcgB018
ClCG01G004180	Melon (DHL92) v3.5.1	mewcgB418
ClCG01G004180	Watermelon (97103) v1	wcgwmB119
ClCG01G004180	Watermelon (97103) v1	wcgwmB142
ClCG01G004180	Cucurbita pepo (Zucchini)	cpewcgB165
ClCG01G004180	Cucurbita pepo (Zucchini)	cpewcgB637
ClCG01G004180	Cucurbita pepo (Zucchini)	cpewcgB641
ClCG01G004180	Cucurbita pepo (Zucchini)	cpewcgB780
ClCG01G004180	Bottle gourd (USVL1VR-Ls)	lsiwcgB008
ClCG01G004180	Cucumber (Gy14) v2	cgybwcgB332
ClCG01G004180	Melon (DHL92) v3.6.1	medwcgB016
ClCG01G004180	Silver-seed gourd	carwcgB0528
ClCG01G004180	Silver-seed gourd	carwcgB0897
ClCG01G004180	Cucumber (Chinese Long) v3	cucwcgB211
ClCG01G004180	Cucumber (Chinese Long) v3	cucwcgB385
ClCG01G004180	Watermelon (97103) v2	wcgwmbB089
ClCG01G004180	Watermelon (97103) v2	wcgwmbB094
ClCG01G004180	Wax gourd	wcgwgoB193
ClCG01G004180	Cucurbita moschata (Rifu)	cmowcgB247
ClCG01G004180	Cucumber (Gy14) v1	cgywcgB520
ClCG01G004180	Cucumber (Gy14) v1	cgywcgB557
ClCG01G004180	Cucurbita maxima (Rimu)	cmawcgB259
ClCG01G004180	Cucurbita maxima (Rimu)	cmawcgB518
ClCG01G004180	Cucurbita maxima (Rimu)	cmawcgB524