ClCG01G003830 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G003830
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Monocopper oxidase-like protein SKU5
Location	CG_Chr01 : 4064490 .. 4065035 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTTTCCTTACTTCTTATCGGTTTTTCTCCTTCCTATTTGCTTGTTTGTGACATTCTCCTCCGCCGCAGATCCGTTCGCTTTCTTTGATTTTGAAGTCTCTTACATCACTGCTTCTCCTCTGGGAGTCCCTCAACAGGTCTGTTTTCTTTGGATCTTGTTTTCCTCTTCCATTTTTCTTTTTTCCACTTCTGGGGGCTTTCTGTAGTTGCATGCTCAGATGGGTTAGTGTTGGATTTTAAGAATGTTTCGATTTTTTTTAGCTCTAGATCTTTTCCCTGTGTTGCTATGTTTTTGAGAAACAGAGTACATTGTTGGAATTGAGCTGAGAGGAAGTGANATTATGATCATTTTAGTAATTTATTTAATTTTTAATTCTTTTCACATTTTCACTTTAGTTATTTGTGTATTAATTTAAGATGGTTGGGTGGTTTCTTGTTTTAGTTTCTAAATATTGTCTAAAAATTTATTTATTTTTCATCATTTATTTTTATAGAGATTTGAACCTCAAGCTTATCATATATTACTTTGTGTCAATTAA

mRNA sequence

ATGGCTTCCTTTCCTTACTTCTTATCGGTTTTTCTCCTTCCTATTTGCTTGTTTGTGACATTCTCCTCCGCCGCAGATCCGTTCGCTTTCTTTGATTTTGAAGTCTCTTACATCACTGCTTCTCCTCTGGGAGTCCCTCAACAGAGATTTGAACCTCAAGCTTATCATATATTACTTTGTGTCAATTAA

Coding sequence (CDS)

ATGGCTTCCTTTCCTTACTTCTTATCGGTTTTTCTCCTTCCTATTTGCTTGTTTGTGACATTCTCCTCCGCCGCAGATCCGTTCGCTTTCTTTGATTTTGAAGTCTCTTACATCACTGCTTCTCCTCTGGGAGTCCCTCAACAGAGATTTGAACCTCAAGCTTATCATATATTACTTTGTGTCAATTAA

Protein sequence

MASFPYFLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQRFEPQAYHILLCVN

Homology

[Close]

BLAST of ClCG01G003830 vs. Swiss-Prot
Match: SKS1_ARATH (Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.2e-07
Identity = 28/48 (58.33%), Postives = 30/48 (62.50%), Query Frame = 1


Query: 1  MASFPYFLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          MA+    L+ FLL   L    S AADPF  +DF VSY+TASPLGVPQQ
Sbjct: 1  MAATCSLLASFLLCFALLSAVSFAADPFVSYDFRVSYLTASPLGVPQQ 48

[Close]

BLAST of ClCG01G003830 vs. Swiss-Prot
Match: SKU5_ARATH (Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.2e-07
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 10 VFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          + LL   + ++F  AADP++F++FEVSYITASPLGVPQQ
Sbjct: 6  ILLLVFFVNISFCFAADPYSFYNFEVSYITASPLGVPQQ 44

[Close]

BLAST of ClCG01G003830 vs. Swiss-Prot
Match: SKS2_ARATH (Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana GN=SKS2 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.0e-06
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 1


Query: 1  MASFPYFLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          MA+  +F + F+    L   FS A DP+  +DF +SYITASPLGVPQQ
Sbjct: 1  MAATDFFFA-FVFSFALIFGFSFAGDPYVSYDFTLSYITASPLGVPQQ 47

[Close]

BLAST of ClCG01G003830 vs. TrEMBL
Match: A0A0A0KMU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G160220 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-14
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 1  MASFPYFLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          MASF Y LS+FLLP CLF+TFSSAADPFAFFDFEVSYITASPLGVPQQ
Sbjct: 2  MASFGY-LSLFLLPFCLFLTFSSAADPFAFFDFEVSYITASPLGVPQQ 48

[Close]

BLAST of ClCG01G003830 vs. TrEMBL
Match: M5WT60_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003224mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-08
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1


Query: 7  FLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          FL+VFL+ ICLF +FSSA DP  + +FEVSYITASPLGVPQQ
Sbjct: 6  FLAVFLVHICLFASFSSAEDPNIYHEFEVSYITASPLGVPQQ 47

[Close]

BLAST of ClCG01G003830 vs. TrEMBL
Match: W9QU48_9ROSA (Monocopper oxidase-like protein SKU5 OS=Morus notabilis GN=L484_019025 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-08
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1


Query: 8  LSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          LSV ++ ICL V+FS AADP+ F++FEVSYITASPLGVPQQ
Sbjct: 7  LSVVVIHICLLVSFSFAADPYVFYNFEVSYITASPLGVPQQ 47

[Close]

BLAST of ClCG01G003830 vs. TrEMBL
Match: B9N3P9_POPTR (Monocopper oxidase family protein OS=Populus trichocarpa GN=POPTR_0001s00250g PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.7e-08
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 1  MASFPYFLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          MA    FL++FL+ ICL ++   AADPF  +DFEVSYITASPLGVPQQ
Sbjct: 1  MALRSKFLALFLIHICLLLSLCLAADPFVSYDFEVSYITASPLGVPQQ 48

[Close]

BLAST of ClCG01G003830 vs. TrEMBL
Match: B9GVI3_POPTR (Monocopper oxidase family protein OS=Populus trichocarpa GN=POPTR_0003s11220g PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-07
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 1


Query: 1  MASFPYFLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          MA    FL++FL+  CL +   SAADPF  +DFEVSYITASPLGVPQQ
Sbjct: 1  MALCSKFLALFLIHTCLLLGLCSAADPFVSYDFEVSYITASPLGVPQQ 48

[Close]

BLAST of ClCG01G003830 vs. TAIR10
Match: AT4G12420.1 (AT4G12420.1 Cupredoxin superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 4.1e-08
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 10 VFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          + LL   + ++F  AADP++F++FEVSYITASPLGVPQQ
Sbjct: 6  ILLLVFFVNISFCFAADPYSFYNFEVSYITASPLGVPQQ 44

[Close]

BLAST of ClCG01G003830 vs. TAIR10
Match: AT4G25240.1 (AT4G25240.1 SKU5 similar 1)

HSP 1 Score: 53.9 bits (128), Expect = 4.1e-08
Identity = 28/48 (58.33%), Postives = 30/48 (62.50%), Query Frame = 1


Query: 1  MASFPYFLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          MA+    L+ FLL   L    S AADPF  +DF VSY+TASPLGVPQQ
Sbjct: 1  MAATCSLLASFLLCFALLSAVSFAADPFVSYDFRVSYLTASPLGVPQQ 48

[Close]

BLAST of ClCG01G003830 vs. TAIR10
Match: AT5G51480.1 (AT5G51480.1 SKU5 similar 2)

HSP 1 Score: 50.4 bits (119), Expect = 4.5e-07
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 1


Query: 1  MASFPYFLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          MA+  +F + F+    L   FS A DP+  +DF +SYITASPLGVPQQ
Sbjct: 1  MAATDFFFA-FVFSFALIFGFSFAGDPYVSYDFTLSYITASPLGVPQQ 47

[Close]

BLAST of ClCG01G003830 vs. TAIR10
Match: AT5G48450.1 (AT5G48450.1 SKU5 similar 3)

HSP 1 Score: 46.2 bits (108), Expect = 8.5e-06
Identity = 25/48 (52.08%), Postives = 29/48 (60.42%), Query Frame = 1


Query: 1  MASFPYFLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          M  FP  L    L + L VT + AADP+ FFD+ VSY++ASPLG  QQ
Sbjct: 1  MRCFPPPLWCTSLVVFLSVTGALAADPYVFFDWTVSYLSASPLGTRQQ 48

[Close]

BLAST of ClCG01G003830 vs. NCBI nr
Match: gi|659073560|ref|XP_008437127.1| (PREDICTED: monocopper oxidase-like protein SKU5 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-15
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 1


Query: 1  MASFPYFLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          MASF Y LS+FLLPICLFVTFSSAADPFAFFDFEVSYITASPLG+PQQ
Sbjct: 2  MASFGY-LSLFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGIPQQ 48

[Close]

BLAST of ClCG01G003830 vs. NCBI nr
Match: gi|449459706|ref|XP_004147587.1| (PREDICTED: monocopper oxidase-like protein SKU5 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 2.7e-14
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 1  MASFPYFLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          MASF Y LS+FLLP CLF+TFSSAADPFAFFDFEVSYITASPLGVPQQ
Sbjct: 2  MASFGY-LSLFLLPFCLFLTFSSAADPFAFFDFEVSYITASPLGVPQQ 48

[Close]

BLAST of ClCG01G003830 vs. NCBI nr
Match: gi|657978431|ref|XP_008381156.1| (PREDICTED: monocopper oxidase-like protein SKU5 [Malus domestica])

HSP 1 Score: 67.8 bits (164), Expect = 7.7e-09
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1


Query: 7  FLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          FL+V L+ ICLFV+FSSA DP  F+ FEVSYITASPLGVPQQ
Sbjct: 6  FLTVLLIHICLFVSFSSAEDPNVFYQFEVSYITASPLGVPQQ 47

[Close]

BLAST of ClCG01G003830 vs. NCBI nr
Match: gi|694423830|ref|XP_009339705.1| (PREDICTED: monocopper oxidase-like protein SKU5 [Pyrus x bretschneideri])

HSP 1 Score: 67.8 bits (164), Expect = 7.7e-09
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1


Query: 7  FLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          FL+V L+ ICLFV+FSSA DP  F+ FEVSYITASPLGVPQQ
Sbjct: 6  FLTVLLIHICLFVSFSSAEDPNVFYQFEVSYITASPLGVPQQ 47

[Close]

BLAST of ClCG01G003830 vs. NCBI nr
Match: gi|645266448|ref|XP_008238616.1| (PREDICTED: monocopper oxidase-like protein SKU5 [Prunus mume])

HSP 1 Score: 65.9 bits (159), Expect = 2.9e-08
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1


Query: 7  FLSVFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGVPQQ 49
          FL+VFL+ ICLF +FSSA DP  + +FEVSYITASPLGVPQQ
Sbjct: 6  FLAVFLVHICLFASFSSAEDPNIYHEFEVSYITASPLGVPQQ 47

The following BLAST results are available for this feature:

BLAST of ClCG01G003830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKS1_ARATH	7.2e-07	58.33	Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1	[more]
SKU5_ARATH	7.2e-07	61.54	Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1	[more]
SKS2_ARATH	8.0e-06	52.08	Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana GN=SKS2 PE=1 SV=1	[more]

BLAST of ClCG01G003830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMU3_CUCSA	1.9e-14	89.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G160220 PE=4 SV=1	[more]
M5WT60_PRUPE	2.0e-08	73.81	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003224mg PE=4 SV=1	[more]
W9QU48_9ROSA	3.5e-08	73.17	Monocopper oxidase-like protein SKU5 OS=Morus notabilis GN=L484_019025 PE=4 SV=1	[more]
B9N3P9_POPTR	7.7e-08	64.58	Monocopper oxidase family protein OS=Populus trichocarpa GN=POPTR_0001s00250g PE...	[more]
B9GVI3_POPTR	1.0e-07	64.58	Monocopper oxidase family protein OS=Populus trichocarpa GN=POPTR_0003s11220g PE...	[more]

BLAST of ClCG01G003830 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12420.1	4.1e-08	61.54	Cupredoxin superfamily protein	[more]
AT4G25240.1	4.1e-08	58.33	SKU5 similar 1	[more]
AT5G51480.1	4.5e-07	52.08	SKU5 similar 2	[more]
AT5G48450.1	8.5e-06	52.08	SKU5 similar 3	[more]

BLAST of ClCG01G003830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073560\|ref\|XP_008437127.1\|	5.5e-15	91.67	PREDICTED: monocopper oxidase-like protein SKU5 [Cucumis melo]	[more]
gi\|449459706\|ref\|XP_004147587.1\|	2.7e-14	89.58	PREDICTED: monocopper oxidase-like protein SKU5 [Cucumis sativus]	[more]
gi\|657978431\|ref\|XP_008381156.1\|	7.7e-09	76.19	PREDICTED: monocopper oxidase-like protein SKU5 [Malus domestica]	[more]
gi\|694423830\|ref\|XP_009339705.1\|	7.7e-09	76.19	PREDICTED: monocopper oxidase-like protein SKU5 [Pyrus x bretschneideri]	[more]
gi\|645266448\|ref\|XP_008238616.1\|	2.9e-08	73.81	PREDICTED: monocopper oxidase-like protein SKU5 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G003830.1	ClCG01G003830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11709	MULTI-COPPER OXIDASE	coord: 1..44 score: 2.7
None	No IPR available	PANTHER	PTHR11709:SF82	MONOCOPPER OXIDASE-LIKE PROTEIN SKU5	coord: 1..44 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G003830	Silver-seed gourd	carwcgB0172
ClCG01G003830	Silver-seed gourd	carwcgB0756
ClCG01G003830	Silver-seed gourd	carwcgB0843
ClCG01G003830	Silver-seed gourd	carwcgB0899
ClCG01G003830	Cucumber (Chinese Long) v3	cucwcgB211
ClCG01G003830	Cucumber (Chinese Long) v3	cucwcgB385
ClCG01G003830	Watermelon (97103) v2	wcgwmbB089
ClCG01G003830	Watermelon (97103) v2	wcgwmbB094
ClCG01G003830	Wax gourd	wcgwgoB193
ClCG01G003830	Watermelon (Charleston Gray)	wcgwcgB041
ClCG01G003830	Cucurbita moschata (Rifu)	cmowcgB247
ClCG01G003830	Cucumber (Gy14) v1	cgywcgB520
ClCG01G003830	Cucumber (Gy14) v1	cgywcgB557
ClCG01G003830	Cucurbita maxima (Rimu)	cmawcgB259
ClCG01G003830	Cucurbita maxima (Rimu)	cmawcgB518
ClCG01G003830	Cucurbita maxima (Rimu)	cmawcgB524
ClCG01G003830	Cucurbita maxima (Rimu)	cmawcgB733
ClCG01G003830	Cucurbita moschata (Rifu)	cmowcgB283
ClCG01G003830	Cucurbita moschata (Rifu)	cmowcgB516
ClCG01G003830	Cucurbita moschata (Rifu)	cmowcgB522
ClCG01G003830	Cucurbita moschata (Rifu)	cmowcgB737
ClCG01G003830	Wild cucumber (PI 183967)	cpiwcgB211
ClCG01G003830	Wild cucumber (PI 183967)	cpiwcgB379
ClCG01G003830	Cucumber (Chinese Long) v2	cuwcgB207
ClCG01G003830	Cucumber (Chinese Long) v2	cuwcgB364
ClCG01G003830	Melon (DHL92) v3.5.1	mewcgB018
ClCG01G003830	Melon (DHL92) v3.5.1	mewcgB418
ClCG01G003830	Watermelon (97103) v1	wcgwmB119
ClCG01G003830	Watermelon (97103) v1	wcgwmB142
ClCG01G003830	Cucurbita pepo (Zucchini)	cpewcgB165
ClCG01G003830	Cucurbita pepo (Zucchini)	cpewcgB200
ClCG01G003830	Cucurbita pepo (Zucchini)	cpewcgB637
ClCG01G003830	Cucurbita pepo (Zucchini)	cpewcgB780
ClCG01G003830	Bottle gourd (USVL1VR-Ls)	lsiwcgB008
ClCG01G003830	Bottle gourd (USVL1VR-Ls)	lsiwcgB394
ClCG01G003830	Cucumber (Gy14) v2	cgybwcgB192
ClCG01G003830	Cucumber (Gy14) v2	cgybwcgB332
ClCG01G003830	Melon (DHL92) v3.6.1	medwcgB016
ClCG01G003830	Melon (DHL92) v3.6.1	medwcgB409