ClCG01G003240 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G003240
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionVery similar to retrotransposon reverse transcriptase
LocationCG_Chr01 : 3301391 .. 3301789 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGTGAATTTGGGGTCTTTAAGAAAAAGATTATAAGTCAACTTCAGGACAATGTGTAAACTTTGCGGCATTGTTATTCTGTATGAATATGCCAGAAGTTTGTAGATCCTTCCTTGAAGATGTTATCAATATTGAATAGGCTGATAATCCATTGGTTGAGATGTGAAAACTTGTGTTTGCGAAAGAAACTAGGAAGGCTAAATTTAAGAGAGTTAGAATTATTTAACCAAGCTTTGTTAGCAAAACAGGCTTGCATAATTCTTCTAAATCCTTTTTCTTTAGTTTGTAAGGTTTTAAAGGGTGATATTTCCCTTTATGCTCTATTTTAGAGTATGCTTGTTCAAAATCTGATTCCTTTTTCTAGAAGGGGCTTTAATGGGGGAAAGAGCTTTTAA

mRNA sequence

ATGGCTCGTGAATTTGGGGTCTTTAAGAAAAAGATTATAAGTCAACTTCAGGACAATAAGTTTGTAGATCCTTCCTTGAAGATGTTATCAATATTGAATAGGCTGATAATCCATTGGTTGAGATGTGAAAACTTGTGTTTGCGAAAGAAACTAGGAAGGCTAAATTTAAGAGAGTTAGAATTATTTAACCAAGCTTTGTTAGCAAAACAGGCTTGCATAATTCTTCTAAATCCTTTTTCTTTAGTTTGTAAGAGTATGCTTGTTCAAAATCTGATTCCTTTTTCTAGAAGGGGCTTTAATGGGGGAAAGAGCTTTTAA

Coding sequence (CDS)

ATGGCTCGTGAATTTGGGGTCTTTAAGAAAAAGATTATAAGTCAACTTCAGGACAATAAGTTTGTAGATCCTTCCTTGAAGATGTTATCAATATTGAATAGGCTGATAATCCATTGGTTGAGATGTGAAAACTTGTGTTTGCGAAAGAAACTAGGAAGGCTAAATTTAAGAGAGTTAGAATTATTTAACCAAGCTTTGTTAGCAAAACAGGCTTGCATAATTCTTCTAAATCCTTTTTCTTTAGTTTGTAAGAGTATGCTTGTTCAAAATCTGATTCCTTTTTCTAGAAGGGGCTTTAATGGGGGAAAGAGCTTTTAA

Protein sequence

MAREFGVFKKKIISQLQDNKFVDPSLKMLSILNRLIIHWLRCENLCLRKKLGRLNLRELELFNQALLAKQACIILLNPFSLVCKSMLVQNLIPFSRRGFNGGKSF
Homology
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BLAST of ClCG01G003240 vs. NCBI nr
Match: gi|685297068|ref|XP_009139360.1| (PREDICTED: uncharacterized protein LOC103863362 [Brassica rapa])

HSP 1 Score: 58.9 bits (141), Expect = 6.1e-06
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1 

Query: 37  IHWLRCENLCLRKKLGRLNLRELELFNQALLAKQACIILLNPFSLVCKSMLVQNLIPFSR 96
           +HW+  E LCL KKLG +  R+LE FNQALLAKQA  IL +P SL+ + +          
Sbjct: 386 VHWVAWEKLCLPKKLGGMGFRDLECFNQALLAKQAWKILTHPQSLLARFL--------ES 444

Query: 97  RGFNGGK 104
           R F GG+
Sbjct: 446 RYFKGGE 444

The following BLAST results are available for this feature:
BLAST of ClCG01G003240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|685297068|ref|XP_009139360.1|6.1e-0647.76PREDICTED: uncharacterized protein LOC103863362 [Brassica rapa][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G003240.1ClCG01G003240.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G003240Wax gourdwcgwgoB207
ClCG01G003240Watermelon (Charleston Gray)wcgwcgB041
ClCG01G003240Watermelon (Charleston Gray)wcgwcgB101
ClCG01G003240Cucurbita moschata (Rifu)cmowcgB247
ClCG01G003240Cucumber (Gy14) v1cgywcgB445
ClCG01G003240Cucumber (Gy14) v1cgywcgB520
ClCG01G003240Cucumber (Gy14) v1cgywcgB557
ClCG01G003240Cucurbita maxima (Rimu)cmawcgB259
ClCG01G003240Cucurbita maxima (Rimu)cmawcgB292
ClCG01G003240Cucurbita maxima (Rimu)cmawcgB352
ClCG01G003240Cucurbita maxima (Rimu)cmawcgB518
ClCG01G003240Cucurbita maxima (Rimu)cmawcgB733
ClCG01G003240Cucurbita moschata (Rifu)cmowcgB285
ClCG01G003240Cucurbita moschata (Rifu)cmowcgB348
ClCG01G003240Cucurbita moschata (Rifu)cmowcgB516
ClCG01G003240Cucurbita moschata (Rifu)cmowcgB737
ClCG01G003240Wild cucumber (PI 183967)cpiwcgB210
ClCG01G003240Wild cucumber (PI 183967)cpiwcgB211
ClCG01G003240Wild cucumber (PI 183967)cpiwcgB379
ClCG01G003240Cucumber (Chinese Long) v2cuwcgB207
ClCG01G003240Cucumber (Chinese Long) v2cuwcgB208
ClCG01G003240Cucumber (Chinese Long) v2cuwcgB364
ClCG01G003240Melon (DHL92) v3.5.1mewcgB018
ClCG01G003240Melon (DHL92) v3.5.1mewcgB418
ClCG01G003240Melon (DHL92) v3.5.1mewcgB422
ClCG01G003240Watermelon (97103) v1wcgwmB137
ClCG01G003240Watermelon (97103) v1wcgwmB142
ClCG01G003240Cucurbita pepo (Zucchini)cpewcgB023
ClCG01G003240Cucurbita pepo (Zucchini)cpewcgB165
ClCG01G003240Cucurbita pepo (Zucchini)cpewcgB202
ClCG01G003240Cucurbita pepo (Zucchini)cpewcgB639
ClCG01G003240Bottle gourd (USVL1VR-Ls)lsiwcgB008
ClCG01G003240Bottle gourd (USVL1VR-Ls)lsiwcgB322
ClCG01G003240Cucumber (Gy14) v2cgybwcgB192
ClCG01G003240Cucumber (Gy14) v2cgybwcgB191
ClCG01G003240Cucumber (Gy14) v2cgybwcgB332
ClCG01G003240Melon (DHL92) v3.6.1medwcgB016
ClCG01G003240Melon (DHL92) v3.6.1medwcgB408
ClCG01G003240Melon (DHL92) v3.6.1medwcgB409
ClCG01G003240Silver-seed gourdcarwcgB0471
ClCG01G003240Silver-seed gourdcarwcgB0843
ClCG01G003240Silver-seed gourdcarwcgB0898
ClCG01G003240Silver-seed gourdcarwcgB0912
ClCG01G003240Cucumber (Chinese Long) v3cucwcgB209
ClCG01G003240Cucumber (Chinese Long) v3cucwcgB211
ClCG01G003240Cucumber (Chinese Long) v3cucwcgB212
ClCG01G003240Cucumber (Chinese Long) v3cucwcgB385
ClCG01G003240Watermelon (97103) v2wcgwmbB089
ClCG01G003240Watermelon (97103) v2wcgwmbB094
ClCG01G003240Watermelon (97103) v2wcgwmbB109