ClCG01G001970 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G001970
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionMyb family transcription factor
LocationCG_Chr01 : 1943669 .. 1944140 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCCGAAGCTAAGAAGACTGCAAAACAGCCACGAAAACAGTCCAAGAGCAGGAACTCGAGCTCGGAAGGTGTCTTGATTTTTCTGGTTTTTCTGCCATGGCTACTGAGAAGTGAGAACTTTTTTGGTTGGTAAAGGAAGTTGTTATAGCTGTTTTTCATTTTTAATGTGTTTGTTTTGTAGAAGTTACCAGTTTGGAATGGGAGGTCGTTCAAATCAGTGAGCAGGAGGAGGATCTCATTCATAGAATGCACAGACTTGTTGGAGACAGGTTCTATGTCTCTCTCTTTCAAATGGCTCTCTCTTTTTCTACGAAAAATTCGATGATTCTCCGCCATCAACATTCTCGTTCTGAACATGTTTTATTACTGTTACATTGAACTTCAGGTGGGATTTGATCGCGGGACGAATTCCAGGACGAACTGCAGTAGAAATTGAGAGGTTTTGGATATTGAAACATGGTTCCTGA

mRNA sequence

ATGGAATCCGAAGCTAAGAAGACTGCAAAACAGCCACGAAAACAGTCCAAGAGCAGGAACTCGAGCTCGGAAGGTGTCTTGATTTTTCTGGTTTTTCTGCCATGGCTACTGAGAAAAGTTACCAGTTTGGAATGGGAGGTCGTTCAAATCAGTGAGCAGGAGGAGGATCTCATTCATAGAATGCACAGACTTGTTGGAGACAGGTGGGATTTGATCGCGGGACGAATTCCAGGACGAACTGCAGTAGAAATTGAGAGGTTTTGGATATTGAAACATGGTTCCTGA

Coding sequence (CDS)

ATGGAATCCGAAGCTAAGAAGACTGCAAAACAGCCACGAAAACAGTCCAAGAGCAGGAACTCGAGCTCGGAAGGTGTCTTGATTTTTCTGGTTTTTCTGCCATGGCTACTGAGAAAAGTTACCAGTTTGGAATGGGAGGTCGTTCAAATCAGTGAGCAGGAGGAGGATCTCATTCATAGAATGCACAGACTTGTTGGAGACAGGTGGGATTTGATCGCGGGACGAATTCCAGGACGAACTGCAGTAGAAATTGAGAGGTTTTGGATATTGAAACATGGTTCCTGA

Protein sequence

MESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS
Homology
[Close]
BLAST of ClCG01G001970 vs. Swiss-Prot
Match: CPC_ARATH (Transcription factor CPC OS=Arabidopsis thaliana GN=CPC PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-20
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1 

Query: 4  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHR 63
          +A+K  K+ R+QSK++ S SE              +V+S+EWE V++SE+EEDLI RM++
Sbjct: 6  KAEKMDKRRRRQSKAKASCSE--------------EVSSIEWEAVKMSEEEEDLISRMYK 65

Query: 64 LVGDRWDLIAGRIPGRTAVEIERFWILKHG 94
          LVGDRW+LIAGRIPGRT  EIER+W++KHG
Sbjct: 66 LVGDRWELIAGRIPGRTPEEIERYWLMKHG 81

[Close]
BLAST of ClCG01G001970 vs. Swiss-Prot
Match: ETC3_ARATH (MYB-like transcription factor ETC3 OS=Arabidopsis thaliana GN=ETC3 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-18
Identity = 40/54 (74.07%), Postives = 50/54 (92.59%), Query Frame = 1 

Query: 39 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 93
          +V+SLEWEVV +S++EEDL+ RMH+LVGDRW+LIAGRIPGRTA EIERFW++K+
Sbjct: 22 EVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGRIPGRTAGEIERFWVMKN 75

[Close]
BLAST of ClCG01G001970 vs. Swiss-Prot
Match: ETC1_ARATH (MYB-like transcription factor ETC1 OS=Arabidopsis thaliana GN=ETC1 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-16
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 39 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 93
          +V+SLEWE + ++++EEDLI RM++LVG+RWDLIAGRIPGRTA EIERFW++K+
Sbjct: 23 EVSSLEWEEIAMAQEEEDLICRMYKLVGERWDLIAGRIPGRTAEEIERFWVMKN 76

[Close]
BLAST of ClCG01G001970 vs. Swiss-Prot
Match: TRY_ARATH (Transcription factor TRY OS=Arabidopsis thaliana GN=TRY PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-16
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 39 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 93
          +V+S+EWE + ++EQEEDLI RM+RLVGDRWDLIAGR+PGR   EIER+WI+++
Sbjct: 22 EVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQPEEIERYWIMRN 75

[Close]
BLAST of ClCG01G001970 vs. Swiss-Prot
Match: TCL2_ARATH (MYB-like transcription factor TCL2 OS=Arabidopsis thaliana GN=TCL2 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-15
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 39 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 93
          +V S++WE + ++EQEEDLI RMHRLVGDRWDLIAGR+ GR A +IER+WI+++
Sbjct: 25 EVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDIERYWIMRN 78

[Close]
BLAST of ClCG01G001970 vs. TrEMBL
Match: A0A061G715_THECC (Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_016428 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 47/84 (55.95%), Postives = 65/84 (77.38%), Query Frame = 1 

Query: 10 KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRW 69
          ++P+KQ+K   S+SE              +V+S+EWE ++++EQEEDL++R++RLVGDRW
Sbjct: 3  ERPQKQAKILKSTSE--------------EVSSIEWEFIKMTEQEEDLVYRIYRLVGDRW 62

Query: 70 DLIAGRIPGRTAVEIERFWILKHG 94
          DLIAGRIPGRTA EIERFWI++HG
Sbjct: 63 DLIAGRIPGRTAEEIERFWIMRHG 72

[Close]
BLAST of ClCG01G001970 vs. TrEMBL
Match: B9I543_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01420g PE=4 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-18
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 1  MESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHR 60
          MES  ++  ++ RKQ+K  NS SE              +V+S+EWE + +SEQEEDLI+R
Sbjct: 1  MESMDRRRRRR-RKQAKINNSESE--------------EVSSIEWEFIDMSEQEEDLIYR 60

Query: 61 MHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 93
          M+RLVG+RWDLIAGRIPGR A EIERFWI+KH
Sbjct: 61 MYRLVGERWDLIAGRIPGRKAEEIERFWIMKH 77

[Close]
BLAST of ClCG01G001970 vs. TrEMBL
Match: B9N984_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s02310g PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-18
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1 

Query: 10 KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRW 69
          ++ RKQ K  +S SE              +V+S+EWE + +SEQEEDLI+RMHRLVG+RW
Sbjct: 7  RRRRKQPKINSSESE--------------EVSSIEWEFINMSEQEEDLIYRMHRLVGERW 66

Query: 70 DLIAGRIPGRTAVEIERFWILKH 93
          DLIAGRIPGR A EIERFWI+KH
Sbjct: 67 DLIAGRIPGRKAEEIERFWIMKH 75

[Close]
BLAST of ClCG01G001970 vs. TrEMBL
Match: R0FYS9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10024406mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-18
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1 

Query: 4  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHR 63
          + +K  K+ R+QSK++ S SE              +V+S+EWE V++SE+EEDLI RM++
Sbjct: 6  KTEKMDKRRRRQSKAKASCSE--------------EVSSIEWEAVKMSEEEEDLISRMYK 65

Query: 64 LVGDRWDLIAGRIPGRTAVEIERFWILKHG 94
          LVGDRW+LIAGRIPGRT  EIER+W++KHG
Sbjct: 66 LVGDRWELIAGRIPGRTPEEIERYWLMKHG 81

[Close]
BLAST of ClCG01G001970 vs. TrEMBL
Match: A0A0C4ZP98_9ROSI (R3 MYB repressor protein OS=Populus tremula x Populus tremuloides GN=MYB179 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.3e-18
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 1 

Query: 10 KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRW 69
          ++ RKQ K  +S SE              +V+S+EWE + +SEQEEDLI+RMH+LVG+RW
Sbjct: 7  RRRRKQPKINSSESE--------------EVSSIEWEFINMSEQEEDLIYRMHKLVGERW 66

Query: 70 DLIAGRIPGRTAVEIERFWILKH 93
          DLIAGRIPGR A EIERFWI+KH
Sbjct: 67 DLIAGRIPGRKAEEIERFWIMKH 75

[Close]
BLAST of ClCG01G001970 vs. TAIR10
Match: AT2G46410.1 (AT2G46410.1 Homeodomain-like superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 5.7e-22
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1 

Query: 4  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHR 63
          +A+K  K+ R+QSK++ S SE              +V+S+EWE V++SE+EEDLI RM++
Sbjct: 6  KAEKMDKRRRRQSKAKASCSE--------------EVSSIEWEAVKMSEEEEDLISRMYK 65

Query: 64 LVGDRWDLIAGRIPGRTAVEIERFWILKHG 94
          LVGDRW+LIAGRIPGRT  EIER+W++KHG
Sbjct: 66 LVGDRWELIAGRIPGRTPEEIERYWLMKHG 81

[Close]
BLAST of ClCG01G001970 vs. TAIR10
Match: AT4G01060.1 (AT4G01060.1 CAPRICE-like MYB3)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-20
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 1 

Query: 7  KTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVG 66
          +  KQP+  S    SSSEG             +V+SLEWEVV +S++EEDL+ RMH+LVG
Sbjct: 5  RRTKQPKTNSIV-TSSSEGT------------EVSSLEWEVVNMSQEEEDLVSRMHKLVG 64

Query: 67 DRWDLIAGRIPGRTAVEIERFWILKH 93
          DRW+LIAGRIPGRTA EIERFW++K+
Sbjct: 65 DRWELIAGRIPGRTAGEIERFWVMKN 77

[Close]
BLAST of ClCG01G001970 vs. TAIR10
Match: AT1G01380.1 (AT1G01380.1 Homeodomain-like superfamily protein)

HSP 1 Score: 86.7 bits (213), Expect = 8.6e-18
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 39 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 93
          +V+SLEWE + ++++EEDLI RM++LVG+RWDLIAGRIPGRTA EIERFW++K+
Sbjct: 23 EVSSLEWEEIAMAQEEEDLICRMYKLVGERWDLIAGRIPGRTAEEIERFWVMKN 76

[Close]
BLAST of ClCG01G001970 vs. TAIR10
Match: AT5G53200.1 (AT5G53200.1 Homeodomain-like superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-17
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 39 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 93
          +V+S+EWE + ++EQEEDLI RM+RLVGDRWDLIAGR+PGR   EIER+WI+++
Sbjct: 22 EVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQPEEIERYWIMRN 75

[Close]
BLAST of ClCG01G001970 vs. TAIR10
Match: AT2G30424.1 (AT2G30424.1 Homeodomain-like superfamily protein)

HSP 1 Score: 83.2 bits (204), Expect = 9.5e-17
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 39 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 93
          +V S++WE + ++EQEEDLI RMHRLVGDRWDLIAGR+ GR A +IER+WI+++
Sbjct: 25 EVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDIERYWIMRN 78

[Close]
BLAST of ClCG01G001970 vs. NCBI nr
Match: gi|15225977|ref|NP_182164.1| (transcription factor CPC [Arabidopsis thaliana])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 1 

Query: 4  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHR 63
          +A+K  K+ R+QSK++ S SE              +V+S+EWE V++SE+EEDLI RM++
Sbjct: 6  KAEKMDKRRRRQSKAKASCSE--------------EVSSIEWEAVKMSEEEEDLISRMYK 65

Query: 64 LVGDRWDLIAGRIPGRTAVEIERFWILKHG 94
          LVGDRW+LIAGRIPGRT  EIER+W++KHG
Sbjct: 66 LVGDRWELIAGRIPGRTPEEIERYWLMKHG 81

[Close]
BLAST of ClCG01G001970 vs. NCBI nr
Match: gi|590679086|ref|XP_007040481.1| (Homeodomain-like superfamily protein [Theobroma cacao])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 47/84 (55.95%), Postives = 65/84 (77.38%), Query Frame = 1 

Query: 10 KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRW 69
          ++P+KQ+K   S+SE              +V+S+EWE ++++EQEEDL++R++RLVGDRW
Sbjct: 3  ERPQKQAKILKSTSE--------------EVSSIEWEFIKMTEQEEDLVYRIYRLVGDRW 62

Query: 70 DLIAGRIPGRTAVEIERFWILKHG 94
          DLIAGRIPGRTA EIERFWI++HG
Sbjct: 63 DLIAGRIPGRTAEEIERFWIMRHG 72

[Close]
BLAST of ClCG01G001970 vs. NCBI nr
Match: gi|566196230|ref|XP_002317748.2| (hypothetical protein POPTR_0012s01420g [Populus trichocarpa])

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-18
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 1  MESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHR 60
          MES  ++  ++ RKQ+K  NS SE              +V+S+EWE + +SEQEEDLI+R
Sbjct: 1  MESMDRRRRRR-RKQAKINNSESE--------------EVSSIEWEFIDMSEQEEDLIYR 60

Query: 61 MHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 93
          M+RLVG+RWDLIAGRIPGR A EIERFWI+KH
Sbjct: 61 MYRLVGERWDLIAGRIPGRKAEEIERFWIMKH 77

[Close]
BLAST of ClCG01G001970 vs. NCBI nr
Match: gi|566205533|ref|XP_006374132.1| (hypothetical protein POPTR_0015s02310g [Populus trichocarpa])

HSP 1 Score: 99.0 bits (245), Expect = 4.7e-18
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1 

Query: 10 KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRW 69
          ++ RKQ K  +S SE              +V+S+EWE + +SEQEEDLI+RMHRLVG+RW
Sbjct: 7  RRRRKQPKINSSESE--------------EVSSIEWEFINMSEQEEDLIYRMHRLVGERW 66

Query: 70 DLIAGRIPGRTAVEIERFWILKH 93
          DLIAGRIPGR A EIERFWI+KH
Sbjct: 67 DLIAGRIPGRKAEEIERFWIMKH 75

[Close]
BLAST of ClCG01G001970 vs. NCBI nr
Match: gi|743927497|ref|XP_011007923.1| (PREDICTED: MYB-like transcription factor ETC3 [Populus euphratica])

HSP 1 Score: 99.0 bits (245), Expect = 4.7e-18
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1 

Query: 10 KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRW 69
          ++ RKQ K  +S SE              +V+S+EWE + +SEQEEDLI+RMHRLVG+RW
Sbjct: 7  RRRRKQPKINSSESE--------------EVSSIEWEFINMSEQEEDLIYRMHRLVGERW 66

Query: 70 DLIAGRIPGRTAVEIERFWILKH 93
          DLIAGRIPGR A EIERFWI+KH
Sbjct: 67 DLIAGRIPGRKAEEIERFWIMKH 75

The following BLAST results are available for this feature:
BLAST of ClCG01G001970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CPC_ARATH1.0e-2054.44Transcription factor CPC OS=Arabidopsis thaliana GN=CPC PE=1 SV=1[more]
ETC3_ARATH1.6e-1874.07MYB-like transcription factor ETC3 OS=Arabidopsis thaliana GN=ETC3 PE=2 SV=1[more]
ETC1_ARATH1.5e-1668.52MYB-like transcription factor ETC1 OS=Arabidopsis thaliana GN=ETC1 PE=2 SV=1[more]
TRY_ARATH2.6e-1666.67Transcription factor TRY OS=Arabidopsis thaliana GN=TRY PE=1 SV=1[more]
TCL2_ARATH1.7e-1564.81MYB-like transcription factor TCL2 OS=Arabidopsis thaliana GN=TCL2 PE=1 SV=1[more]
BLAST of ClCG01G001970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061G715_THECC1.1e-1855.95Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_016428 PE=4 SV=1[more]
B9I543_POPTR1.5e-1856.52Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01420g PE=4 SV=2[more]
B9N984_POPTR3.3e-1859.04Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s02310g PE=4 SV=1[more]
R0FYS9_9BRAS3.3e-1853.33Uncharacterized protein OS=Capsella rubella GN=CARUB_v10024406mg PE=4 SV=1[more]
A0A0C4ZP98_9ROSI7.3e-1857.83R3 MYB repressor protein OS=Populus tremula x Populus tremuloides GN=MYB179 PE=2... [more]
BLAST of ClCG01G001970 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46410.15.7e-2254.44 Homeodomain-like superfamily protein[more]
AT4G01060.11.8e-2056.98 CAPRICE-like MYB3[more]
AT1G01380.18.6e-1868.52 Homeodomain-like superfamily protein[more]
AT5G53200.11.5e-1766.67 Homeodomain-like superfamily protein[more]
AT2G30424.19.5e-1764.81 Homeodomain-like superfamily protein[more]
BLAST of ClCG01G001970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|15225977|ref|NP_182164.1|1.6e-1854.44transcription factor CPC [Arabidopsis thaliana][more]
gi|590679086|ref|XP_007040481.1|1.6e-1855.95Homeodomain-like superfamily protein [Theobroma cacao][more]
gi|566196230|ref|XP_002317748.2|2.1e-1856.52hypothetical protein POPTR_0012s01420g [Populus trichocarpa][more]
gi|566205533|ref|XP_006374132.1|4.7e-1859.04hypothetical protein POPTR_0015s02310g [Populus trichocarpa][more]
gi|743927497|ref|XP_011007923.1|4.7e-1859.04PREDICTED: MYB-like transcription factor ETC3 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0030154 cell differentiation
biological_process GO:0007275 multicellular organism development
biological_process GO:0050794 regulation of cellular process
biological_process GO:0001101 response to acid chemical
biological_process GO:0010033 response to organic substance
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0009888 tissue development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G001970.1ClCG01G001970.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 51..88
score: 9.
IPR001005SANT/Myb domainSMARTSM00717santcoord: 46..94
score: 1.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 50..89
score: 4.5
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 51..89
score: 1.5
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 26..92
score: 3.4
NoneNo IPR availablePANTHERPTHR10641:SF620SUBFAMILY NOT NAMEDcoord: 26..92
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G001970Cla011379Watermelon (97103) v1wcgwmB142
ClCG01G001970Cla004910Watermelon (97103) v1wcgwmB152
ClCG01G001970Bhi12G000140Wax gourdwcgwgoB192
ClCG01G001970Lsi09G001820Bottle gourd (USVL1VR-Ls)lsiwcgB008
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
ClCG01G001970ClCG01G000590Watermelon (Charleston Gray)wcgwcgB084
The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G001970Cucurbita pepo (Zucchini)cpewcgB165
ClCG01G001970Bottle gourd (USVL1VR-Ls)lsiwcgB397
ClCG01G001970Cucumber (Gy14) v2cgybwcgB267
ClCG01G001970Cucumber (Gy14) v2cgybwcgB332
ClCG01G001970Melon (DHL92) v3.6.1medwcgB016
ClCG01G001970Melon (DHL92) v3.6.1medwcgB461
ClCG01G001970Silver-seed gourdcarwcgB0044
ClCG01G001970Silver-seed gourdcarwcgB0352
ClCG01G001970Silver-seed gourdcarwcgB0575
ClCG01G001970Silver-seed gourdcarwcgB0898
ClCG01G001970Cucumber (Chinese Long) v3cucwcgB299
ClCG01G001970Cucumber (Chinese Long) v3cucwcgB385
ClCG01G001970Watermelon (97103) v2wcgwmbB089
ClCG01G001970Watermelon (97103) v2wcgwmbB119
ClCG01G001970Wax gourdwcgwgoB211
ClCG01G001970Watermelon (Charleston Gray)wcgwcgB105
ClCG01G001970Watermelon (Charleston Gray)wcgwcgB111
ClCG01G001970Cucurbita moschata (Rifu)cmowcgB247
ClCG01G001970Cucumber (Gy14) v1cgywcgB147
ClCG01G001970Cucumber (Gy14) v1cgywcgB520
ClCG01G001970Cucurbita maxima (Rimu)cmawcgB259
ClCG01G001970Cucurbita maxima (Rimu)cmawcgB290
ClCG01G001970Cucurbita maxima (Rimu)cmawcgB518
ClCG01G001970Cucurbita maxima (Rimu)cmawcgB635
ClCG01G001970Cucurbita moschata (Rifu)cmowcgB284
ClCG01G001970Cucurbita moschata (Rifu)cmowcgB516
ClCG01G001970Cucurbita moschata (Rifu)cmowcgB637
ClCG01G001970Wild cucumber (PI 183967)cpiwcgB299
ClCG01G001970Wild cucumber (PI 183967)cpiwcgB379
ClCG01G001970Cucumber (Chinese Long) v2cuwcgB289
ClCG01G001970Cucumber (Chinese Long) v2cuwcgB364
ClCG01G001970Cucumber (Chinese Long) v2cuwcgB434
ClCG01G001970Melon (DHL92) v3.5.1mewcgB018
ClCG01G001970Melon (DHL92) v3.5.1mewcgB085
ClCG01G001970Melon (DHL92) v3.5.1mewcgB467
ClCG01G001970Watermelon (97103) v1wcgwmB127