ClCG01G001030 (gene) Watermelon (Charleston Gray)

NameClCG01G001030
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic
LocationCG_Chr01 : 905114 .. 907978 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTGAAGGAGAGAGAAACGACAAGAAACGACGGCGAGAAACGGCGGCGAGCGGTGGCGACGACGACAGAGGTAGCTCTGGGAATGGAAAGAGGCGGCATGAACGCTGGCGTGATGAGAGACGAGAGTTTAGAAGGGTTTTTGCCAAAACAAAGAGTTTTGCAAAAGGGAGAGGAAATGTATACCTTTTTAAAGGTTTAATTTAAATATTAAGTTATTTTGAAAAAAAAAAATAGTTGATTTAATAACCACTCAAAATTGAATTTAAAAGTTAATAGTGTATTTTAAACTGAATTGTTTAAATAAAAATGAATTTTTTAAAAATATTTATTTTTTAAATTAATCCAAACAAACTTTTAGACAGTAAAAATGTGTTTTTGGGTATGATGGTTTTGTGCGGATACTCAAATTGTGGGAAAAAAATGAGATATGTTTTGTTCTTTTTCTTACATATACCTTTTGCTAAGTGAAATTATTAAAAGAGAACTCTGGTGCACTTTTGGATTGGCTCTCTTACTCTCTTGTCTTTCTTTTCATACATAGCTCTCCTCTTTCCTTTTGTTTTCTAGTGCTTGATCTCGCTCTTTATGTTGGGTCTCGCTCTGCAATACAACAAAAAAGAAGGAGAGAAGAAGTCAAACAAAGAAGAAACACGTTGACTCATCAGAGCTGGTCATCTCGTAGAAGCTCGTCGCATGGTCTTGCCCGAGAAGAAAACCAAAACGAGAGGGAAAGTGAGAAAAGAAGAAGGAAGGAAAGAGGAAGAAATTGCAAGGAAGAGGGAAAAACTAAGGGTAATTTTATAAAGTTGCTTGACTAAAATGTAAGCAAAATGTCAAAACTATTAAGTTTTAAAAAATGGGGTTGTACATATCCTAACAATTTTCTAATAAATAAATAAATAAGTAAGAATTGTTATGGTTAAGTTAAGTCACTTTATCAAGAAAAAAGAATTATATATTTAGATTGTTGTATCCTTGAAAACTTCAAACTAATAATTAGATCCATAAAAGTTAAAATGAAACTAGCTCAGTGATAATAGTATGTAGAGATGTCAATTTAAAACTTTTAAAGTTCAAGGAAAAAGGTCATGTTAAATATCGTTGAGCTAAGTTCACTTTGACTAAAAATTACTTCTTTAAACATATAATAGGGAAAACAAATCATTGTAGTTGGTTGAAATTATTATTTAAAAATAATGAAAAATAATTACACGAAACCCATTCCCTACGAATATTTCATGGGAAAATATTTGCTTCTCCCTCCAAATTTAAATGAGGAATTTCATGGAGACGAAGGTTTAAATGGGGACGAGGAGTAGAATGTCGTTCACTGACCCCATGCTATCCAATGAACATCTCTAATTGCATTTACTCCTTTTCTCGAGATTGTATGTTCACATCGCCACTACCTCATTTGTTGTACTCCAGAGAGATATGCAAAAAACAATACATGAAATGCATAAATCGTACTAACTTCAAATTCTAAATTTTGAATCAATTTAGACTTTCCATTAAGGTTCCATTTTAAAATCGTTAATGCACAATTTTCACATGTACATGACTTCTTCAAGTGTAACGAAGATGGAAATTGACGATTAGCTAATGTCCATAAATTGTAATCATTATTTATGAATATTTTCACAATAACTAATGTGTAAATGTTTGTTATGTAAATGAATTTAAGATGTCTTTTGAGGTTAAATAAATGGTAACAACAATTTTAATCTTTTATCAATGTATTTGGATGGACTTTTCAAATGTTTAATTTTGAAAAACGAGTCATTTTAGCAAAATTTGTAATGTTTGGCAACCACTAACTTTTAAAGTCTGAGTATGAAATTGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGAAACACTTGATATTAAATTTTCCCTTTAAAATTTTCACATATATGAGAAGGACTAAAATACTCTTACACTATCCCTCCCAAGTTTCTCCACCTTGACATTCACCATGACTACTGTTTGGCGACCACCATCACCCATCAAAGACCATCGACTTCACTCCACTAGCGTCTTTGTCGACCACTAGTAAGAAGAGAATATGAAAGAAAATACTTACTTGAAGACACATACGGTGTTTATTAATAGTCAATTTTTTAGAGTGATTTGACGTTTGTAGAAACATTTTGAGAGTAGAACGAATCAAACAAAATCATATATAAAAATACTTTTAAAGAAAATATAATCAAATACAACAGCGTTTTAACCTTAAAAAACTTTTATAAAAACAAAAGGTTTGAAAGAAAATGCATTCTTTAAACATTTGTTTAGGCATATTCAAGGATAACCTATATTGTTGTATAAGTAGAATGACATAGTCAACTTTCATCATTTACTTTTATACATATATTTTTAAAAAGTAGTAATAAATATGTGCTACGCGCATCAAATATTGAGGTTTAAATTTGATGTGTAAATGTAGTATTTAATTTAATGAAAGTTTTATGTATGTAATAAATATAATTTTTAAACTTAGTTTTACACTCTTATCATTGTAAACTTTTAAAAATAGTTAAACAAATTATTAAAATAACTTAAAAGTATAATTAATTTAATGTCTTTATATTTACTTTTAGTTCGTTTATCTTAAATTTTTATGTCTCATAGTTCTAACTTTTTCCTTTACAAGAAAATGTCTTTAACTTTTTACTCTATAAAATTTGCTCCTAATTGTTATTTCGATTCTTTTATATTCTCTCAACATTTTTAGCTAGTTTTGGCATGTTGGGAAATATCATTATTGTCGAACCCAATGTCTACATCGCATTTGCAAGTAAAAGAGTAATTAAACAAACATTGTATAAGACAATCCCTTAA

mRNA sequence

ATGGCGGTGAAGGAGAGAGAAACGACAAGAAACGACGGCGAGAAACGGCGGCGAGCGGTGGCGACGACGACAGAGGTAGCTCTGGGAATGGAAAGAGGCGGCATGAACGCTGGCGTGATGAGAGACGAGACTAGTTTTGGCATGTTGGGAAATATCATTATTGTCGAACCCAATGTCTACATCGCATTTGCAAGTAAAAGAGTAATTAAACAAACATTGTATAAGACAATCCCTTAA

Coding sequence (CDS)

ATGGCGGTGAAGGAGAGAGAAACGACAAGAAACGACGGCGAGAAACGGCGGCGAGCGGTGGCGACGACGACAGAGGTAGCTCTGGGAATGGAAAGAGGCGGCATGAACGCTGGCGTGATGAGAGACGAGACTAGTTTTGGCATGTTGGGAAATATCATTATTGTCGAACCCAATGTCTACATCGCATTTGCAAGTAAAAGAGTAATTAAACAAACATTGTATAAGACAATCCCTTAA

Protein sequence

MAVKERETTRNDGEKRRRAVATTTEVALGMERGGMNAGVMRDETSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP
BLAST of ClCG01G001030 vs. Swiss-Prot
Match: ACCD_GOSHI (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Gossypium hirsutum GN=accD PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08
Identity = 28/34 (82.35%), Postives = 28/34 (82.35%), Query Frame = 1

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL KTIP
Sbjct: 418 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTIP 451

BLAST of ClCG01G001030 vs. Swiss-Prot
Match: ACCD_GOSBA (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Gossypium barbadense GN=accD PE=3 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08
Identity = 28/34 (82.35%), Postives = 28/34 (82.35%), Query Frame = 1

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL KTIP
Sbjct: 418 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTIP 451

BLAST of ClCG01G001030 vs. Swiss-Prot
Match: ACCD_ILLOL (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Illicium oligandrum GN=accD PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08
Identity = 28/34 (82.35%), Postives = 28/34 (82.35%), Query Frame = 1

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL KTIP
Sbjct: 400 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLKKTIP 433

BLAST of ClCG01G001030 vs. Swiss-Prot
Match: ACCD_ATRBE (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Atropa belladonna GN=accD PE=3 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 6.3e-08
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 1

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL KT+P
Sbjct: 406 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVP 439

BLAST of ClCG01G001030 vs. Swiss-Prot
Match: ACCD_GUIAB (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Guizotia abyssinica GN=accD PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.3e-08
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 1

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL KT+P
Sbjct: 407 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVP 440

BLAST of ClCG01G001030 vs. TrEMBL
Match: A0A151S2B0_CAJCA (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Cajanus cajan GN=KK1_029353 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 1

Query: 36 NAGVMRDETSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
          N GV    TSFGMLG+III EPN YIAFA KRVIKQTL K +P
Sbjct: 28 NGGVT---TSFGMLGDIIIAEPNAYIAFAGKRVIKQTLNKAVP 67

BLAST of ClCG01G001030 vs. TrEMBL
Match: A0A068URY7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00002759001 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 1

Query: 13 GEKRRRAVATTTE----VALGMERGGMNAGVMRDETSFGMLGNIIIVEPNVYIAFASKRV 72
          GEK  R V   T     + L    GG     M++ + FGMLG+III EPN YIAFA KRV
Sbjct: 6  GEKITRLVEYATNPFGPLILVCASGGAR---MQEGSDFGMLGDIIIAEPNAYIAFAGKRV 65

Query: 73 IKQTLYKTIP 79
          I+QTL KT+P
Sbjct: 66 IEQTLNKTVP 72

BLAST of ClCG01G001030 vs. TrEMBL
Match: A0A0J8DSG0_BETVU (Uncharacterized protein (Fragment) OS=Beta vulgaris subsp. vulgaris GN=BVRB_029130 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1

Query: 44  TSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           TSFGMLG+III EPN YIAFA KRVI+QTL KT+P
Sbjct: 122 TSFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVP 156

BLAST of ClCG01G001030 vs. TrEMBL
Match: A0A0A0UR65_9ASTR (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Lasthenia burkei GN=accD PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+IIIVEPN YIAFA KRVI+QTL KT+P
Sbjct: 405 SFGMLGDIIIVEPNAYIAFAGKRVIEQTLNKTVP 438

BLAST of ClCG01G001030 vs. TrEMBL
Match: D3WDI2_CORFO (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Cornus florida GN=accD PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL+KT+P
Sbjct: 430 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLHKTVP 463

BLAST of ClCG01G001030 vs. TAIR10
Match: ATCG00500.1 (ATCG00500.1 acetyl-CoA carboxylase carboxyl transferase subunit beta)

HSP 1 Score: 52.8 bits (125), Expect = 1.1e-07
Identity = 25/34 (73.53%), Postives = 26/34 (76.47%), Query Frame = 1

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EP  YIAFA KRVI+QTL K +P
Sbjct: 412 SFGMLGDIIIAEPYAYIAFAGKRVIEQTLKKAVP 445

BLAST of ClCG01G001030 vs. NCBI nr
Match: gi|1012337682|gb|KYP48951.1| (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Cajanus cajan])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 1

Query: 36 NAGVMRDETSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
          N GV    TSFGMLG+III EPN YIAFA KRVIKQTL K +P
Sbjct: 28 NGGVT---TSFGMLGDIIIAEPNAYIAFAGKRVIKQTLNKAVP 67

BLAST of ClCG01G001030 vs. NCBI nr
Match: gi|661878848|emb|CDP17411.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 1

Query: 13 GEKRRRAVATTTE----VALGMERGGMNAGVMRDETSFGMLGNIIIVEPNVYIAFASKRV 72
          GEK  R V   T     + L    GG     M++ + FGMLG+III EPN YIAFA KRV
Sbjct: 6  GEKITRLVEYATNPFGPLILVCASGGAR---MQEGSDFGMLGDIIIAEPNAYIAFAGKRV 65

Query: 73 IKQTLYKTIP 79
          I+QTL KT+P
Sbjct: 66 IEQTLNKTVP 72

BLAST of ClCG01G001030 vs. NCBI nr
Match: gi|870819026|gb|KMS93670.1| (hypothetical protein BVRB_029130, partial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1

Query: 44  TSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           TSFGMLG+III EPN YIAFA KRVI+QTL KT+P
Sbjct: 122 TSFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVP 156

BLAST of ClCG01G001030 vs. NCBI nr
Match: gi|704001789|gb|AIW51854.1| (acetyl-CoA caboxylase beta subunit (chloroplast) [Lasthenia burkei])

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+IIIVEPN YIAFA KRVI+QTL KT+P
Sbjct: 405 SFGMLGDIIIVEPNAYIAFAGKRVIEQTLNKTVP 438

BLAST of ClCG01G001030 vs. NCBI nr
Match: gi|290490491|gb|ADD31602.1| (acetyl-CoA carboxylase carboxyltransferase beta subunit protein (chloroplast) [Cornus florida])

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL+KT+P
Sbjct: 430 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLHKTVP 463

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ACCD_GOSHI4.8e-0882.35Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
ACCD_GOSBA4.8e-0882.35Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
ACCD_ILLOL4.8e-0882.35Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
ACCD_ATRBE6.3e-0879.41Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
ACCD_GUIAB6.3e-0879.41Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
Match NameE-valueIdentityDescription
A0A151S2B0_CAJCA1.8e-0672.09Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Cajanus cajan... [more]
A0A068URY7_COFCA1.8e-0651.43Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00002759001 PE=4 SV=1[more]
A0A0J8DSG0_BETVU1.8e-0680.00Uncharacterized protein (Fragment) OS=Beta vulgaris subsp. vulgaris GN=BVRB_0291... [more]
A0A0A0UR65_9ASTR2.4e-0682.35Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
D3WDI2_CORFO2.4e-0679.41Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
Match NameE-valueIdentityDescription
ATCG00500.11.1e-0773.53ATCG00500.1 acetyl-CoA carboxylase carboxyl transferase subunit beta[more]
Match NameE-valueIdentityDescription
gi|1012337682|gb|KYP48951.1|2.6e-0672.09Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Cajanus cajan][more]
gi|661878848|emb|CDP17411.1|2.6e-0651.43unnamed protein product [Coffea canephora][more]
gi|870819026|gb|KMS93670.1|2.6e-0680.00hypothetical protein BVRB_029130, partial [Beta vulgaris subsp. vulgaris][more]
gi|704001789|gb|AIW51854.1|3.4e-0682.35acetyl-CoA caboxylase beta subunit (chloroplast) [Lasthenia burkei][more]
gi|290490491|gb|ADD31602.1|3.4e-0679.41acetyl-CoA carboxylase carboxyltransferase beta subunit protein (chloroplast) [C... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0006090 pyruvate metabolic process
cellular_component GO:0009317 acetyl-CoA carboxylase complex
cellular_component GO:0009507 chloroplast
molecular_function GO:0003989 acetyl-CoA carboxylase activity
molecular_function GO:0016740 transferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G001030.1ClCG01G001030.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22855ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATEDcoord: 45..78
score: 1.1
NoneNo IPR availablePANTHERPTHR22855:SF15ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA, CHLOROPLASTICcoord: 45..78
score: 1.1

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None