ClCG01G001030 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGTGAAGGAGAGAGAAACGACAAGAAACGACGGCGAGAAACGGCGGCGAGCGGTGGCGACGACGACAGAGGTAGCTCTGGGAATGGAAAGAGGCGGCATGAACGCTGGCGTGATGAGAGACGAGAGTTTAGAAGGGTTTTTGCCAAAACAAAGAGTTTTGCAAAAGGGAGAGGAAATGTATACCTTTTTAAAGGTTTAATTTAAATATTAAGTTATTTTGAAAAAAAAAAATAGTTGATTTAATAACCACTCAAAATTGAATTTAAAAGTTAATAGTGTATTTTAAACTGAATTGTTTAAATAAAAATGAATTTTTTAAAAATATTTATTTTTTAAATTAATCCAAACAAACTTTTAGACAGTAAAAATGTGTTTTTGGGTATGATGGTTTTGTGCGGATACTCAAATTGTGGGAAAAAAATGAGATATGTTTTGTTCTTTTTCTTACATATACCTTTTGCTAAGTGAAATTATTAAAAGAGAACTCTGGTGCACTTTTGGATTGGCTCTCTTACTCTCTTGTCTTTCTTTTCATACATAGCTCTCCTCTTTCCTTTTGTTTTCTAGTGCTTGATCTCGCTCTTTATGTTGGGTCTCGCTCTGCAATACAACAAAAAAGAAGGAGAGAAGAAGTCAAACAAAGAAGAAACACGTTGACTCATCAGAGCTGGTCATCTCGTAGAAGCTCGTCGCATGGTCTTGCCCGAGAAGAAAACCAAAACGAGAGGGAAAGTGAGAAAAGAAGAAGGAAGGAAAGAGGAAGAAATTGCAAGGAAGAGGGAAAAACTAAGGGTAATTTTATAAAGTTGCTTGACTAAAATGTAAGCAAAATGTCAAAACTATTAAGTTTTAAAAAATGGGGTTGTACATATCCTAACAATTTTCTAATAAATAAATAAATAAGTAAGAATTGTTATGGTTAAGTTAAGTCACTTTATCAAGAAAAAAGAATTATATATTTAGATTGTTGTATCCTTGAAAACTTCAAACTAATAATTAGATCCATAAAAGTTAAAATGAAACTAGCTCAGTGATAATAGTATGTAGAGATGTCAATTTAAAACTTTTAAAGTTCAAGGAAAAAGGTCATGTTAAATATCGTTGAGCTAAGTTCACTTTGACTAAAAATTACTTCTTTAAACATATAATAGGGAAAACAAATCATTGTAGTTGGTTGAAATTATTATTTAAAAATAATGAAAAATAATTACACGAAACCCATTCCCTACGAATATTTCATGGGAAAATATTTGCTTCTCCCTCCAAATTTAAATGAGGAATTTCATGGAGACGAAGGTTTAAATGGGGACGAGGAGTAGAATGTCGTTCACTGACCCCATGCTATCCAATGAACATCTCTAATTGCATTTACTCCTTTTCTCGAGATTGTATGTTCACATCGCCACTACCTCATTTGTTGTACTCCAGAGAGATATGCAAAAAACAATACATGAAATGCATAAATCGTACTAACTTCAAATTCTAAATTTTGAATCAATTTAGACTTTCCATTAAGGTTCCATTTTAAAATCGTTAATGCACAATTTTCACATGTACATGACTTCTTCAAGTGTAACGAAGATGGAAATTGACGATTAGCTAATGTCCATAAATTGTAATCATTATTTATGAATATTTTCACAATAACTAATGTGTAAATGTTTGTTATGTAAATGAATTTAAGATGTCTTTTGAGGTTAAATAAATGGTAACAACAATTTTAATCTTTTATCAATGTATTTGGATGGACTTTTCAAATGTTTAATTTTGAAAAACGAGTCATTTTAGCAAAATTTGTAATGTTTGGCAACCACTAACTTTTAAAGTCTGAGTATGAAATTGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGAAACACTTGATATTAAATTTTCCCTTTAAAATTTTCACATATATGAGAAGGACTAAAATACTCTTACACTATCCCTCCCAAGTTTCTCCACCTTGACATTCACCATGACTACTGTTTGGCGACCACCATCACCCATCAAAGACCATCGACTTCACTCCACTAGCGTCTTTGTCGACCACTAGTAAGAAGAGAATATGAAAGAAAATACTTACTTGAAGACACATACGGTGTTTATTAATAGTCAATTTTTTAGAGTGATTTGACGTTTGTAGAAACATTTTGAGAGTAGAACGAATCAAACAAAATCATATATAAAAATACTTTTAAAGAAAATATAATCAAATACAACAGCGTTTTAACCTTAAAAAACTTTTATAAAAACAAAAGGTTTGAAAGAAAATGCATTCTTTAAACATTTGTTTAGGCATATTCAAGGATAACCTATATTGTTGTATAAGTAGAATGACATAGTCAACTTTCATCATTTACTTTTATACATATATTTTTAAAAAGTAGTAATAAATATGTGCTACGCGCATCAAATATTGAGGTTTAAATTTGATGTGTAAATGTAGTATTTAATTTAATGAAAGTTTTATGTATGTAATAAATATAATTTTTAAACTTAGTTTTACACTCTTATCATTGTAAACTTTTAAAAATAGTTAAACAAATTATTAAAATAACTTAAAAGTATAATTAATTTAATGTCTTTATATTTACTTTTAGTTCGTTTATCTTAAATTTTTATGTCTCATAGTTCTAACTTTTTCCTTTACAAGAAAATGTCTTTAACTTTTTACTCTATAAAATTTGCTCCTAATTGTTATTTCGATTCTTTTATATTCTCTCAACATTTTTAGCTAGTTTTGGCATGTTGGGAAATATCATTATTGTCGAACCCAATGTCTACATCGCATTTGCAAGTAAAAGAGTAATTAAACAAACATTGTATAAGACAATCCCTTAA ATGGCGGTGAAGGAGAGAGAAACGACAAGAAACGACGGCGAGAAACGGCGGCGAGCGGTGGCGACGACGACAGAGGTAGCTCTGGGAATGGAAAGAGGCGGCATGAACGCTGGCGTGATGAGAGACGAGACTAGTTTTGGCATGTTGGGAAATATCATTATTGTCGAACCCAATGTCTACATCGCATTTGCAAGTAAAAGAGTAATTAAACAAACATTGTATAAGACAATCCCTTAA ATGGCGGTGAAGGAGAGAGAAACGACAAGAAACGACGGCGAGAAACGGCGGCGAGCGGTGGCGACGACGACAGAGGTAGCTCTGGGAATGGAAAGAGGCGGCATGAACGCTGGCGTGATGAGAGACGAGACTAGTTTTGGCATGTTGGGAAATATCATTATTGTCGAACCCAATGTCTACATCGCATTTGCAAGTAAAAGAGTAATTAAACAAACATTGTATAAGACAATCCCTTAA MAVKERETTRNDGEKRRRAVATTTEVALGMERGGMNAGVMRDETSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP
BLAST of ClCG01G001030 vs. Swiss-Prot
Match: ACCD_GOSHI (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Gossypium hirsutum GN=accD PE=3 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08 Identity = 28/34 (82.35%), Postives = 28/34 (82.35%), Query Frame = 1
BLAST of ClCG01G001030 vs. Swiss-Prot
Match: ACCD_GOSBA (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Gossypium barbadense GN=accD PE=3 SV=2) HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08 Identity = 28/34 (82.35%), Postives = 28/34 (82.35%), Query Frame = 1
BLAST of ClCG01G001030 vs. Swiss-Prot
Match: ACCD_ILLOL (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Illicium oligandrum GN=accD PE=3 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08 Identity = 28/34 (82.35%), Postives = 28/34 (82.35%), Query Frame = 1
BLAST of ClCG01G001030 vs. Swiss-Prot
Match: ACCD_ATRBE (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Atropa belladonna GN=accD PE=3 SV=2) HSP 1 Score: 57.8 bits (138), Expect = 6.3e-08 Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 1
BLAST of ClCG01G001030 vs. Swiss-Prot
Match: ACCD_GUIAB (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Guizotia abyssinica GN=accD PE=3 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 6.3e-08 Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 1
BLAST of ClCG01G001030 vs. TrEMBL
Match: A0A151S2B0_CAJCA (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Cajanus cajan GN=KK1_029353 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06 Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 1
BLAST of ClCG01G001030 vs. TrEMBL
Match: A0A068URY7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00002759001 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06 Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 1
BLAST of ClCG01G001030 vs. TrEMBL
Match: A0A0J8DSG0_BETVU (Uncharacterized protein (Fragment) OS=Beta vulgaris subsp. vulgaris GN=BVRB_029130 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06 Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1
BLAST of ClCG01G001030 vs. TrEMBL
Match: A0A0A0UR65_9ASTR (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Lasthenia burkei GN=accD PE=3 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06 Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1
BLAST of ClCG01G001030 vs. TrEMBL
Match: D3WDI2_CORFO (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Cornus florida GN=accD PE=3 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06 Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
BLAST of ClCG01G001030 vs. TAIR10
Match: ATCG00500.1 (ATCG00500.1 acetyl-CoA carboxylase carboxyl transferase subunit beta) HSP 1 Score: 52.8 bits (125), Expect = 1.1e-07 Identity = 25/34 (73.53%), Postives = 26/34 (76.47%), Query Frame = 1
BLAST of ClCG01G001030 vs. NCBI nr
Match: gi|1012337682|gb|KYP48951.1| (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Cajanus cajan]) HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06 Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 1
BLAST of ClCG01G001030 vs. NCBI nr
Match: gi|661878848|emb|CDP17411.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06 Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 1
BLAST of ClCG01G001030 vs. NCBI nr
Match: gi|870819026|gb|KMS93670.1| (hypothetical protein BVRB_029130, partial [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06 Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1
BLAST of ClCG01G001030 vs. NCBI nr
Match: gi|704001789|gb|AIW51854.1| (acetyl-CoA caboxylase beta subunit (chloroplast) [Lasthenia burkei]) HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06 Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1
BLAST of ClCG01G001030 vs. NCBI nr
Match: gi|290490491|gb|ADD31602.1| (acetyl-CoA carboxylase carboxyltransferase beta subunit protein (chloroplast) [Cornus florida]) HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06 Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |