ClCG00G001010 (gene) Watermelon (Charleston Gray)

Overview
NameClCG00G001010
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionGeneral transcription factor IIH subunit 5
LocationCG_Chr00 : 3613647 .. 3616056 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAACCTCTCTCTCTCTCTCTCTCTCTCTTAGCAAACCGCCGGTTTTGGTTCGCCGCTTGCCGCAGCAGTCTGCCGGAGGTAAGGATTCTTTCTCTTTCTCTCTCTAGTTAACTCTCTGTCCGATTCCCTCTTAGTGCCGTCTCTCTTATCATTTGTGGAGCTTCAAGTGAAAATGATCTATTGGCTTCCAATTTCCAATCGGCACTACAACAATAGGCTTTCTCCCATTCCCTGATCTAAGAATAGATTATCAGCCATTAATCTGAAAATTGACCTTAGAATGCTTCTCTAATGCCATCTTTATTATCTTCCAATTGTCGCAAGAAACATTGTAGTTACTTTACTACGATTACTTTTACACAAATTCAAAGTACAAGTCAAACACAGTTTTGCTTTGCTGATTCTCATTCGGATCTTTTTCTTCCTCTTATTCCTCTATGGAAGTTCAAATTTGTTCCGCTGGGCTAACATCGACGATGATTGAATCATTAAGCTCTGAGAATTCAATATTATTGATTAATCACTTGAAATTGGAATGTAGGAACGGACTTTCAGTTCAATTTATTCCGCTGCTGTTTGAGGGTGGACGTTTTTGACATCATGGTTAATGCCATTAAAGGGCTATTCATCTCCTGGTAAACACCTCCTACATTACTTGACAGATAGATATCTATTCAGGGTGCCTGTTTGAATATGGAATCTTTGTTTTCCTCTGTTAGTTGTTTCGTTCTTCTCGTTGGAATTGCTAGGATATTTGAATAACACAGCGACTTCCACTGTGATATTGTCTATTATTTCTCCTGTTTGGTTATGTTCTTTTCTTAAAAAATTTCCCATTTTCCCTGTTTTTCTTGCTGGTCTCTTCTGAACACTGGAATAGAGTCTGTTTTTATCATGACAGTTAAAATGATGGAGCTTCCTATAATTCTCAGAAAATTTCACTGCAAGTCTACTAATACTTGGGACCATTAGATTTTTCCTGCTTTTGTTTTCCTCAATCCTTGCTGGATAATCTCTTTTAAACATTGGAATAGAGTATTTTGAAATTATTGTGGCAATTGAAATGACGTCGCCTTTTAAAAGACTCAAAACTTACATTGTGATATTGTTTGGTTACTTTGGATCTTGTTGGTTTTTTTTTTTCTCTTTTTTGGTGATCTCTTCTAAACATTAGGATAGAGTCTAGCAAGAAGTGGAGTTGTTTAGTTGTGGATATAAAATTAATATTTTTTACTGGTAGGGCTGACAGTAGGTCTAAAAACTCCTTGAGCCAAACTAACTCCGCTCCTCCTAACTCCTAGTCTTTGGTTCAAACATTCCGTTTGTGACCATTATGACATTCTAAATGACAGAGCTTATTAGATATGCAAGTTTCAAGGTGATGTTGTCAACCAATACTTGGGTCATGTTCTTTTCTTCCCCCAAACCAACAAAATTTTTGCTGGATGATCTCTTTTAACACTGTGATAGGTCTTTTGAATTATTAGGGCAATCAAAATGACAACACTTTTAGAAGACTCGAAACTTACTTTGTGATATTGTTTATTACTTGGAACCTTGTTCATTTTTTTCCTGTTTTATTGATGATCTCTTTTAAACATGGGATCATTGGGATGTTGGTATGATTTCTGAGTTATTTTTTCTCATATAAGTAACGAGGCGCAATGACTTTGGCAAATCCCTTAGTTCATGACATTGTAGAAATTTTCATCTACAATTTTGCAATTCACATTGACGTCATAGAATCTGTTATTGGTTGTCGTTCACAAAGCCCGAAGTATCTTTGTGTATTCTATCATATGCCATTCACAAATTGGAATTGATTTGTCAGTCTTTATAACCAAAGCTGATATGCATTTGATGTTGGCTTTCTTTCTTAATCTCAATTCCGAACTTTTGGCGAAACTTCATTCTAGTTTTGATAAGGGAGGGTGATTGATCATGATATACAGATTTTTTTGCTTTTCAGGATGAATAGATTCTTGGAATTTTCTTCTGTTAAGATAAATTATTTTCTTCCTTTATGCAGTGACGTACCTATGGCACAATTTATCATCAATTACAATGCTTCCTTGCCTACATCCCATAGATTTATCATCCATATACTGGATAATACCCACATGTTTGTGCAACCCCATGTAGCCGATATGATTCGAAACGCCATCTCTGAATTTCGAGATCAGATTTCTTATGAGAAACCTACTTGAACCATGTTGGTAATCTAAAGTTCACTGTATAATTGTATTTTTAGAGTTTTAGAAGTTATTTATTTTGCTTCTAAAGCTCATTTTGCATCCAAACGGTTTGACTTTGTATTGGTGTCTCTTCACTATGCAATGTATCTCAACTGACTTGAATATCTAGAATGGTGGAAACTATTGAGCTGCAATTGGTTCTTAACCTGAAAAAA

mRNA sequence

TAACCTCTCTCTCTCTCTCTCTCTCTCTTAGCAAACCGCCGGTTTTGGTTCGCCGCTTGCCGCAGCAGTCTGCCGGAGGAACGGACTTTCAGTTCAATTTATTCCGCTGCTGTTTGAGGGTGGACGTTTTTGACATCATGGTTAATGCCATTAAAGGGCTATTCATCTCCTGTGACGTACCTATGGCACAATTTATCATCAATTACAATGCTTCCTTGCCTACATCCCATAGATTTATCATCCATATACTGGATAATACCCACATGTTTGTGCAACCCCATGTAGCCGATATGATTCGAAACGCCATCTCTGAATTTCGAGATCAGATTTCTTATGAGAAACCTACTTGAACCATGTTGGTAATCTAAAGTTCACTGTATAATTGTATTTTTAGAGTTTTAGAAGTTATTTATTTTGCTTCTAAAGCTCATTTTGCATCCAAACGGTTTGACTTTGTATTGGTGTCTCTTCACTATGCAATGTATCTCAACTGACTTGAATATCTAGAATGGTGGAAACTATTGAGCTGCAATTGGTTCTTAACCTGAAAAAA

Coding sequence (CDS)

ATGGTTAATGCCATTAAAGGGCTATTCATCTCCTGTGACGTACCTATGGCACAATTTATCATCAATTACAATGCTTCCTTGCCTACATCCCATAGATTTATCATCCATATACTGGATAATACCCACATGTTTGTGCAACCCCATGTAGCCGATATGATTCGAAACGCCATCTCTGAATTTCGAGATCAGATTTCTTATGAGAAACCTACTTGA

Protein sequence

MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
Homology
[Close]
BLAST of ClCG00G001010 vs. Swiss-Prot
Match: TFB5_ARATH (RNA polymerase II transcription factor B subunit 5 OS=Arabidopsis thaliana GN=TFB5 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-25
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+F+SCD+PM QFI+N N S+P S +FIIH+LD+TH+FVQPHV  MIR+AIS+F
Sbjct: 1  MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60

Query: 61 RDQISYEKPT 71
          RDQ SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of ClCG00G001010 vs. Swiss-Prot
Match: TF2H5_CHICK (General transcription factor IIH subunit 5 OS=Gallus gallus GN=GTF2H5 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.2e-07
Identity = 25/66 (37.88%), Postives = 36/66 (54.55%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVN +KG+ I CD  M QF++  + S     +FII  LD TH+FV   + + ++  + E 
Sbjct: 1  MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAELVNFLQERVGEL 60

Query: 61 RDQISY 67
           DQ S+
Sbjct: 61 MDQNSF 66

[Close]
BLAST of ClCG00G001010 vs. Swiss-Prot
Match: TF2H5_BOVIN (General transcription factor IIH subunit 5 OS=Bos taurus GN=GTF2H5 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 23/66 (34.85%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   + ++++  + E 
Sbjct: 1  MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60

Query: 61 RDQISY 67
           DQ ++
Sbjct: 61 MDQNAF 66

[Close]
BLAST of ClCG00G001010 vs. Swiss-Prot
Match: TF2H5_HUMAN (General transcription factor IIH subunit 5 OS=Homo sapiens GN=GTF2H5 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 23/66 (34.85%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   + ++++  + E 
Sbjct: 1  MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60

Query: 61 RDQISY 67
           DQ ++
Sbjct: 61 MDQNAF 66

[Close]
BLAST of ClCG00G001010 vs. TrEMBL
Match: A0A0A0L4F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036500 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.6e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+FISCD+PMAQFIINYNASLP SHRFIIHILDNTHMFVQPHVADMIRNAISEF
Sbjct: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 61 RDQISYEKPT 71
          R+QISYEKPT
Sbjct: 61 REQISYEKPT 70

[Close]
BLAST of ClCG00G001010 vs. TrEMBL
Match: A0A059C1G8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00483 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-26
Identity = 57/70 (81.43%), Postives = 66/70 (94.29%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNA KGLFISCD+PMAQFIIN+NASLP S +FIIH+LDNTH+FVQPH+ADM+RNAI+EF
Sbjct: 1  MVNATKGLFISCDIPMAQFIINFNASLPASQKFIIHVLDNTHLFVQPHMADMLRNAIAEF 60

Query: 61 RDQISYEKPT 71
          R+Q SYEKPT
Sbjct: 61 REQNSYEKPT 70

[Close]
BLAST of ClCG00G001010 vs. TrEMBL
Match: A0A0D9ZT96_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-25
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKGLFISCDVPMAQFI+N NAS+P S +FI+H+LD THMFVQPHVADMIR+ ISEF
Sbjct: 1  MVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVADMIRSKISEF 60

Query: 61 RDQISYEKPT 71
          RDQ SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of ClCG00G001010 vs. TrEMBL
Match: B9N3L1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08090g PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-25
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNA KGLFISCD+PMAQFIIN NASLP S +FIIHILD+THMFVQPHV+DMIR+AIS+F
Sbjct: 1  MVNATKGLFISCDIPMAQFIINLNASLPASQKFIIHILDSTHMFVQPHVSDMIRSAISDF 60

Query: 61 RDQISYEKPT 71
          R+Q SYEKP+
Sbjct: 61 REQNSYEKPS 70

[Close]
BLAST of ClCG00G001010 vs. TrEMBL
Match: A0A061GBT2_THECC (Nucleotide excision repair, TFIIH, subunit TTDA isoform 1 OS=Theobroma cacao GN=TCM_047020 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.5e-25
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNA KGLFISCD+PMAQFI+N NAS+P S +FIIH+LDNTH FVQPH A+MIR+AISEF
Sbjct: 1  MVNATKGLFISCDIPMAQFIVNLNASMPASQKFIIHVLDNTHFFVQPHAAEMIRSAISEF 60

Query: 61 RDQISYEKPT 71
          RDQ SY+KPT
Sbjct: 61 RDQNSYDKPT 70

[Close]
BLAST of ClCG00G001010 vs. TAIR10
Match: AT1G12400.1 (AT1G12400.1 Nucleotide excision repair, TFIIH, subunit TTDA)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-26
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+F+SCD+PM QFI+N N S+P S +FIIH+LD+TH+FVQPHV  MIR+AIS+F
Sbjct: 1  MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60

Query: 61 RDQISYEKPT 71
          RDQ SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of ClCG00G001010 vs. TAIR10
Match: AT1G62886.1 (AT1G62886.1 Nucleotide excision repair, TFIIH, subunit TTDA)

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-18
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHI--LDNTHMFVQPHVADMIRNAIS 60
          MVN+IKG+FISCDVPMAQFI + N SLP S +FII +  LD T MFV+P+  +MIR+A+ 
Sbjct: 1  MVNSIKGVFISCDVPMAQFIAHLNNSLPASQKFIIQVLKLDTTSMFVKPYAEEMIRDAVI 60

Query: 61 EFRDQISYEK 69
          +FRD+ SY K
Sbjct: 61 KFRDENSYAK 70

[Close]
BLAST of ClCG00G001010 vs. NCBI nr
Match: gi|659096083|ref|XP_008448918.1| (PREDICTED: general transcription factor IIH subunit 5 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+FISCDVPMAQFIINYNASLP SHRFIIHILDNTHMFVQPHVADMIRNAISEF
Sbjct: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 61 RDQISYEKPT 71
          RDQISYEKPT
Sbjct: 61 RDQISYEKPT 70

[Close]
BLAST of ClCG00G001010 vs. NCBI nr
Match: gi|449460439|ref|XP_004147953.1| (PREDICTED: uncharacterized protein LOC101204877 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 8.1e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+FISCD+PMAQFIINYNASLP SHRFIIHILDNTHMFVQPHVADMIRNAISEF
Sbjct: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 61 RDQISYEKPT 71
          R+QISYEKPT
Sbjct: 61 REQISYEKPT 70

[Close]
BLAST of ClCG00G001010 vs. NCBI nr
Match: gi|702336459|ref|XP_010055551.1| (PREDICTED: uncharacterized protein LOC104443736 [Eucalyptus grandis])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 57/70 (81.43%), Postives = 66/70 (94.29%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNA KGLFISCD+PMAQFIIN+NASLP S +FIIH+LDNTH+FVQPH+ADM+RNAI+EF
Sbjct: 1  MVNATKGLFISCDIPMAQFIINFNASLPASQKFIIHVLDNTHLFVQPHMADMLRNAIAEF 60

Query: 61 RDQISYEKPT 71
          R+Q SYEKPT
Sbjct: 61 REQNSYEKPT 70

[Close]
BLAST of ClCG00G001010 vs. NCBI nr
Match: gi|694392126|ref|XP_009371553.1| (PREDICTED: general transcription factor IIH subunit 5-like [Pyrus x bretschneideri])

HSP 1 Score: 125.2 bits (313), Expect = 4.6e-26
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNA+KGLFISCD+PMAQFIINY+ SLP S RFIIH+LD+TH+FVQPH A+MIRNAI+EF
Sbjct: 1  MVNAVKGLFISCDIPMAQFIINYDNSLPASQRFIIHVLDSTHLFVQPHAAEMIRNAIAEF 60

Query: 61 RDQISYEKPT 71
          RDQ SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of ClCG00G001010 vs. NCBI nr
Match: gi|657958612|ref|XP_008370834.1| (PREDICTED: general transcription factor IIH subunit 5-like [Malus domestica])

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 1 

Query: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNA+KGLFISCD+PMAQFIINY+ SLP S RFIIH+LD+TH+FVQPH A+MIR+AI+EF
Sbjct: 1  MVNAVKGLFISCDIPMAQFIINYDNSLPASQRFIIHVLDSTHLFVQPHAAEMIRSAIAEF 60

Query: 61 RDQISYEKPT 71
          RDQ SYEKPT
Sbjct: 61 RDQNSYEKPT 70

The following BLAST results are available for this feature:
BLAST of ClCG00G001010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TFB5_ARATH2.3e-2572.86RNA polymerase II transcription factor B subunit 5 OS=Arabidopsis thaliana GN=TF... [more]
TF2H5_CHICK6.2e-0737.88General transcription factor IIH subunit 5 OS=Gallus gallus GN=GTF2H5 PE=3 SV=1[more]
TF2H5_BOVIN1.8e-0634.85General transcription factor IIH subunit 5 OS=Bos taurus GN=GTF2H5 PE=3 SV=1[more]
TF2H5_HUMAN1.8e-0634.85General transcription factor IIH subunit 5 OS=Homo sapiens GN=GTF2H5 PE=1 SV=1[more]
BLAST of ClCG00G001010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4F5_CUCSA5.6e-3194.29Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036500 PE=4 SV=1[more]
A0A059C1G8_EUCGR1.1e-2681.43Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00483 PE=4 SV=1[more]
A0A0D9ZT96_9ORYZ1.2e-2582.86Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1[more]
B9N3L1_POPTR2.7e-2581.43Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08090g PE=4 SV=1[more]
A0A061GBT2_THECC3.5e-2578.57Nucleotide excision repair, TFIIH, subunit TTDA isoform 1 OS=Theobroma cacao GN=... [more]
BLAST of ClCG00G001010 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G12400.11.3e-2672.86 Nucleotide excision repair, TFIIH, subunit TTDA[more]
AT1G62886.12.9e-1861.43 Nucleotide excision repair, TFIIH, subunit TTDA[more]
BLAST of ClCG00G001010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096083|ref|XP_008448918.1|2.1e-3197.14PREDICTED: general transcription factor IIH subunit 5 [Cucumis melo][more]
gi|449460439|ref|XP_004147953.1|8.1e-3194.29PREDICTED: uncharacterized protein LOC101204877 [Cucumis sativus][more]
gi|702336459|ref|XP_010055551.1|1.6e-2681.43PREDICTED: uncharacterized protein LOC104443736 [Eucalyptus grandis][more]
gi|694392126|ref|XP_009371553.1|4.6e-2681.43PREDICTED: general transcription factor IIH subunit 5-like [Pyrus x bretschneide... [more]
gi|657958612|ref|XP_008370834.1|1.7e-2580.00PREDICTED: general transcription factor IIH subunit 5-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009400TFIIH_TTDA/Tfb5
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0000439 core TFIIH complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG00G001010.1ClCG00G001010.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009400TFIIH subunit TTDA/Tfb5GENE3DG3DSA:3.30.70.1220coord: 1..68
score: 1.1
IPR009400TFIIH subunit TTDA/Tfb5PFAMPF06331Tfb5coord: 1..67
score: 2.7
IPR009400TFIIH subunit TTDA/Tfb5SMARTSM01395Tbf5_2coord: 1..68
score: 6.8
IPR009400TFIIH subunit TTDA/Tfb5unknownSSF142897TFB5-likecoord: 6..69
score: 4.97
NoneNo IPR availablePANTHERPTHR28580FAMILY NOT NAMEDcoord: 1..69
score: 6.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG00G001010Melon (DHL92) v3.6.1medwcgB397
ClCG00G001010Silver-seed gourdcarwcgB0015
ClCG00G001010Silver-seed gourdcarwcgB0841
ClCG00G001010Cucumber (Chinese Long) v3cucwcgB180
ClCG00G001010Watermelon (97103) v2wcgwmbB001
ClCG00G001010Wax gourdwcgwgoB002
ClCG00G001010Watermelon (Charleston Gray)wcgwcgB001
ClCG00G001010Cucumber (Gy14) v1cgywcgB016
ClCG00G001010Cucurbita maxima (Rimu)cmawcgB277
ClCG00G001010Cucurbita maxima (Rimu)cmawcgB715
ClCG00G001010Cucurbita moschata (Rifu)cmowcgB269
ClCG00G001010Cucurbita moschata (Rifu)cmowcgB719
ClCG00G001010Wild cucumber (PI 183967)cpiwcgB176
ClCG00G001010Cucumber (Chinese Long) v2cuwcgB173
ClCG00G001010Melon (DHL92) v3.5.1mewcgB408
ClCG00G001010Watermelon (97103) v1wcgwmB002
ClCG00G001010Cucurbita pepo (Zucchini)cpewcgB186
ClCG00G001010Cucurbita pepo (Zucchini)cpewcgB760
ClCG00G001010Bottle gourd (USVL1VR-Ls)lsiwcgB384
ClCG00G001010Cucumber (Gy14) v2cgybwcgB160