ClCG00G000970 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG00G000970
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr00 : 3344421 .. 3347581 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTTCTCGACCTCTGTGGAAAGTCCTAAGTGATCCCAAGTCCAACTCCCCTTCCAATAACGACAAAAAGAAGGTTAAATAACCCAAGAATCATCGCAATGTCGTGGTGCTACGTTATAATTGCAGCTCCGAAGTGCCACATTTCCATGATGCACTAACAATGACAGATGGTAATTAGAAGCTTTTAATGATGCACTAAAGATGACCGATGACAGAAAATCTACACAAAAATGTCTCAGGTCTATGGCATCGTGGTGCCTTTGCTCCGGATTTTTAAGCATTCTTTTCGCTTATCTTTTGCCCTAGGTCAAAGTTTGACCTTTCTAAAAGGTATTTTGGTTCTTTTACCTAAAATTTAGCTCATTTTACTCCAATTGCTCATTTCCTACAAAAAAGATGAGTAAAGCATCTAAGAACTCAATTATGCAATAAAACCAACAAAAATCTAAACCTAAGAATGCACCTTTTAGCTACGTTTCACTGACCATCCTAGCAGCTCGAGTCTAGAACTTCACTAGAGGATGTGTTCAAGTCCTTAGCTGAACACTTGATGAAATTCCAAAAAGATGTCATGACCTTCCAACAAGAGACCACAAAGATCCAAGAAGAAAATCTATTGTTTCAGAAGGAACGAGGATGAGCATGCAACACTTAGCCAACCAAATTTCCCAATTGGCCACCTTCGTGAACAAATTGGACAGCCAAAATGGTAAGCTCTCGGTCCAGCTCGAGCCCTAGGTGAGAAACGTTAGTGCTTTGACAACGGTAAGTTCCCCTGAATTTTCAAGGCTTATGACTGAAGAAGAATTTAATGAAGTATTTGAGTTCATTGAAAAGTCTAACAAGAAAGATGTAAGACCCCAACACCGAGGAGCTCTGAACAGGTTTGTACTGATTCCTTGAAGCAATCTGATTTATACACTTATGTGTCTGTTGCTCCTTTTCCAAACAGATTTCTCAATCTTGAGACAAATAAAAATAAAGAAGATGTTAAAACAATTGGAATAGTGTTTGCTAGCTCTCTTGAAAAAAGCAAAATGGACTAGGTGAAGAAAGAAGAAAAGCTTAAGGTAGAAAAGACAATCACCATTTTGCTAGGTAACCTCCCAATCAAACATAATGACCCATGTATGTTTTGTTTACTGGTGTGTACAACCCAAGTGCACGGGTCAAGTTATAGTAAAACGGTCAAAGAAACCGAGTATTCTTCCATTGGAGATCAAATGCACGAATTGTGTTTAGCTATTCTAAAGCCTTTTAGATTTTATTCAAGGGTTGGTATTGTGATGACAATTTTTAAATAACTAACTAAAGAAAACAAATAAATGGGCAGATGAAATTCAAGTCATAAAGGTGCCCTAGGGTGTTGAATCCCCTTATTACTTCATTAAGTCATGCAAATATTTTCTATGGATTATTATGTTAATGATATACTTAAGTCTAGAAACTAAATTTCAGATTATTATCTTCCAATAACAATCTTTTCTCATGCAAACCTAATTAATTACTAATCACGTGAAATCAAATCAAGAAGCATGACATTAAGAAAAGTCATGATCCAACTTTCACTAACAACCTAACTATTTGCATGATAGGTTAGCTAATAATTCAATATTATAGACCCAGTTAAACATGCAATCTTTCCAATTGAACATTCAACCTAACATTCATCTATGATCAATTGATGAGATAAAACACAATAATATTGAAAAGTAATTACTAATACATATCACTACTACAAAATTGAGTTTCAATGACACAATGGTATAACCAAATTAAGGTTGGAGAGTATAAAAAGTATCATACATGTGAAAAATGCTCGTTTTTTTGCAAAAAAAAACGCAAATTTTCGAACATCAATATTTCATGACAGTTTTTAAATGTCACAAATTCATGACATTTATTAATTGTTATTAAATAAAATTATTTATTTATTATTTAATAAAAATAAGAATATATGATTGGAAAAACCCTAACCATGTGCAATTAAATAAAAAAAAATCCTTATATTTTCTCTTTTCCCCTTCCTCTTTTTCGATGGTACAACCTTCTGCACATTTTCACAGCTCTTTTCCCTCAGTGAAGTGCATTTAGGTGACTATTGGAAACCTTGAACTTCAAGCTCTAGGAAGAAGAAGAAGAAAAGTTATGGAAAAAGAAGAAAGTGCCTCCAAAAAGATGAGAATTTATGTTGGAGCACTGGGTACCGCCATGACTAAAGACAATCTCAAAAAGGTTTCTCAGAGCGTCGGTGGTGTGATGGAGGTCGTTCATTTCGTTCGTACCAAATCTCGCAACTTTGCTTATTTCTACTGATCTACGCCTTTTATCGTCGCTCGTAAAAGACTAAAAATCAAATAAAATTTATAATACCAAATCCTACTCCTATTACAACGATGGCATAGCAATAGTGCTAAGTTCAGGTCGATTTGCAAGGAAGCGCTAGTATGAGTTTTTTGTAAAGCTAATTAACTAATTAGAGCGGTAAATGGGGGAGGGGGCGTAAACCCTACTTTCATTTATAAGCACCTAACTTAAGTGTGTAATATTGTTGTGGACTTATACACATTTTCTTGTTTAGATTGAAAGGAAGAGTGGAGGAGAAGTCGTGGAAGGTAGGCTTGCAGATTAAGCCGAGAGTACTTTTGGTATGCCTAATCTTAAATCCTTATGAGATTTACCAAGTTTCAAATTTATTTTGACAAGCTCATTAGAATGTAAAAGACTTAAGGGGATTGTCACCATTTGAACCAAGGTGGAATGATGCTATTAAGGATTATTATTATTAGTAGTATTAGTATTATTATGTTGTTAATAATTAAAAAGAGAATTTGGAATTTAATTGAGTTAGTGGATATAATAATTAAAGAAAAAAAGAAAAAAAGAGAGAGAAGAAAAAGAAGAAAAGGAAGTTGGTGGGGAGGCTAAGTACGAAAAAGGGAAAAGCATTTTTTTTCATATCATTGCCGACTTTCATTCTCCTCCAAACCTAAGCAAGTTCATGGTTCTTCAGCTAGACATCGAAAGGGAGAAGAAGGAGAAGATTTAGGTTGATTGAAACGGAATTTTGAAGAAAACCTTGATGAAATTCGAATAGAAACTGAAGCTGGTCTGGAATTCATGCAATCTGAACAGATTGTGGTGTTCAAAGGATAA

mRNA sequence

ATGGAAGTTTCTCGACCTCTGTGGAAAGTCCTAAGTGATCCCAAGTCCAACTCCCCTTCCAATAACGACAAAAAGAAGAGACCACAAAGATCCAAGAAGAAAATCTATTGTTTCAGAAGGAACGAGGATGAGCATGCAACACTTAGCCAACCAAATTTCCCAATTGGCCACCTTCGTGAACAAATTGGACAGCCAAAATGTGCTTTGACAACGGTAAGTTCCCCTGAATTTTCAAGGCTTATGACTGAAGAAGAATTTAATGAAGTATTTGAGTTCATTGAAAAGTCTAACAAGAAAGATGTAAGACCCCAACACCGAGGAGCTCTGAACAGGTTTGTGACTATTGGAAACCTTGAACTTCAAGCTCTAGGAAGAAGAAGAAGAAAAGTTATGGAAAAAGAAGAAAGTGCCTCCAAAAAGATGAGAATTTATGTTGGAGCACTGGGTACCGCCATGACTAAAGACAATCTCAAAAAGGTTTCTCAGAGCGTCGGTGGTGTGATGGAGGTCGTTCATTTCGTTCAAAACCTTGATGAAATTCGAATAGAAACTGAAGCTGGTCTGGAATTCATGCAATCTGAACAGATTGTGGTGTTCAAAGGATAA

Coding sequence (CDS)

ATGGAAGTTTCTCGACCTCTGTGGAAAGTCCTAAGTGATCCCAAGTCCAACTCCCCTTCCAATAACGACAAAAAGAAGAGACCACAAAGATCCAAGAAGAAAATCTATTGTTTCAGAAGGAACGAGGATGAGCATGCAACACTTAGCCAACCAAATTTCCCAATTGGCCACCTTCGTGAACAAATTGGACAGCCAAAATGTGCTTTGACAACGGTAAGTTCCCCTGAATTTTCAAGGCTTATGACTGAAGAAGAATTTAATGAAGTATTTGAGTTCATTGAAAAGTCTAACAAGAAAGATGTAAGACCCCAACACCGAGGAGCTCTGAACAGGTTTGTGACTATTGGAAACCTTGAACTTCAAGCTCTAGGAAGAAGAAGAAGAAAAGTTATGGAAAAAGAAGAAAGTGCCTCCAAAAAGATGAGAATTTATGTTGGAGCACTGGGTACCGCCATGACTAAAGACAATCTCAAAAAGGTTTCTCAGAGCGTCGGTGGTGTGATGGAGGTCGTTCATTTCGTTCAAAACCTTGATGAAATTCGAATAGAAACTGAAGCTGGTCTGGAATTCATGCAATCTGAACAGATTGTGGTGTTCAAAGGATAA

Protein sequence

MEVSRPLWKVLSDPKSNSPSNNDKKKRPQRSKKKIYCFRRNEDEHATLSQPNFPIGHLREQIGQPKCALTTVSSPEFSRLMTEEEFNEVFEFIEKSNKKDVRPQHRGALNRFVTIGNLELQALGRRRRKVMEKEESASKKMRIYVGALGTAMTKDNLKKVSQSVGGVMEVVHFVQNLDEIRIETEAGLEFMQSEQIVVFKG

Homology

[Close]

BLAST of ClCG00G000970 vs. TrEMBL
Match: A0A0A0LXQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651690 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.5e-07
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 131 MEKEESASKKMRIYVGALGTAMTKDNLKKVSQSVGGVMEVVHFVQNLDEIRIETEAGLEF 190
           MEK +SAS+ MRIYVG LG AMT+D+L+KV  SVGGV+E V FV+     +  + A ++F
Sbjct: 1   MEKGQSASENMRIYVGGLGAAMTEDDLRKVFHSVGGVVEAVDFVRT----KSRSFAYVDF 60

Query: 191 MQSEQ 196
             S Q
Sbjct: 61  FPSSQ 61

[Close]

BLAST of ClCG00G000970 vs. NCBI nr
Match: gi|659085871|ref|XP_008443653.1| (PREDICTED: uncharacterized protein LOC103487200 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 8.0e-07
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 131 MEKEESASKKMRIYVGALGTAMTKDNLKKVSQSVGGVMEVVHFVQNLDEIRIETEAGLEF 190
           ME+ +SAS+KMRIYVG LG AMT+D+L+KV  SVGGV+E V FV+     +  + A ++F
Sbjct: 1   MERGQSASEKMRIYVGGLGAAMTEDDLRKVFHSVGGVVEAVDFVRT----KSRSFAYVDF 60

Query: 191 MQSEQ 196
             S Q
Sbjct: 61  FPSSQ 61

[Close]

BLAST of ClCG00G000970 vs. NCBI nr
Match: gi|778664026|ref|XP_004139156.2| (PREDICTED: uncharacterized protein LOC101203716 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 131 MEKEESASKKMRIYVGALGTAMTKDNLKKVSQSVGGVMEVVHFVQNLDEIRIETEAGLEF 190
           MEK +SAS+ MRIYVG LG AMT+D+L+KV  SVGGV+E V FV+     +  + A ++F
Sbjct: 1   MEKGQSASENMRIYVGGLGAAMTEDDLRKVFHSVGGVVEAVDFVRT----KSRSFAYVDF 60

Query: 191 MQSEQ 196
             S Q
Sbjct: 61  FPSSQ 61

The following BLAST results are available for this feature:

BLAST of ClCG00G000970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXQ1_CUCSA	9.5e-07	52.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651690 PE=4 SV=1	[more]

BLAST of ClCG00G000970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085871\|ref\|XP_008443653.1\|	8.0e-07	52.31	PREDICTED: uncharacterized protein LOC103487200 [Cucumis melo]	[more]
gi\|778664026\|ref\|XP_004139156.2\|	1.4e-06	52.31	PREDICTED: uncharacterized protein LOC101203716 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG00G000970.1	ClCG00G000970.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG00G000970	Watermelon (Charleston Gray)	wcgwcgB001
ClCG00G000970	Cucumber (Gy14) v1	cgywcgB016
ClCG00G000970	Cucurbita maxima (Rimu)	cmawcgB277
ClCG00G000970	Cucurbita maxima (Rimu)	cmawcgB715
ClCG00G000970	Cucurbita moschata (Rifu)	cmowcgB269
ClCG00G000970	Cucurbita moschata (Rifu)	cmowcgB719
ClCG00G000970	Wild cucumber (PI 183967)	cpiwcgB176
ClCG00G000970	Cucumber (Chinese Long) v2	cuwcgB173
ClCG00G000970	Melon (DHL92) v3.5.1	mewcgB408
ClCG00G000970	Watermelon (97103) v1	wcgwmB002
ClCG00G000970	Cucurbita pepo (Zucchini)	cpewcgB186
ClCG00G000970	Cucurbita pepo (Zucchini)	cpewcgB760
ClCG00G000970	Bottle gourd (USVL1VR-Ls)	lsiwcgB384
ClCG00G000970	Cucumber (Gy14) v2	cgybwcgB160
ClCG00G000970	Melon (DHL92) v3.6.1	medwcgB397
ClCG00G000970	Silver-seed gourd	carwcgB0015
ClCG00G000970	Silver-seed gourd	carwcgB0841
ClCG00G000970	Cucumber (Chinese Long) v3	cucwcgB180
ClCG00G000970	Watermelon (97103) v2	wcgwmbB001
ClCG00G000970	Wax gourd	wcgwgoB002