Carg28059 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg28059
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal L24
Location	Cucurbita_argyrosperma_scaffold_764 : 16786 .. 18175 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGGAAGGCTGCTGAAAAGCTTATTAGGCACTGGAAAATTCTTAGAGGAGATAATGTGAGGGAAACATTTTAAAGATAGATACCTTACTTTCTCCTATTTATGTGTTAGGTCTCCCTCTGACGATCGTGTTTGTTGGTATTTTTCATAGGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTTATTAAGCGTGTCATTCGCACTCAAAATCGGGTTATTGTTGAGGGTAAAAACTTGGTAAGAAAATCTTTGCCAAAATGGACAATTTGAGGTTTAGAGTTGAGCTTTCTCGTGTTCAATTGCTGTGCTTGGGCCCTCTTGCACTTGTCTGATAATGTAGCTATGCAGGCATTTAAGTCTTGCAAATGATTTGCTTGGTCGTTTTGATTTAGGGTTAAGCCTTTTCCCCCTCCTCATATCCTTCTCTCTCTCTGCATTGAGGTCTTTCCATCACATGATTATCTGTAAAGTTAACTCACTTTCATCTTCAAGGTTCAGAAAGGGGCTGAATATTGAATTCAAGTAATGGCCTATGAAACTGACTTTGTGCTTGCCAATTCAAATGGAACTAAAGAATGGCAGCATTATGCTTTATGTTTATGAAACTAGAGAAGCATTTTCCCCAACACTTGCCACTCAATCAATGTCTATAGTCCACTGATATTCAAGGGTAGTAGGATATCATTAAGTTGAAAATCGTGTTATTATTTCACTTTCCGTTTATTTTACCAGCATGTATAATCTACAGCTGCAGCTGCTCTGATGAATGCTATTTTATGGTTCTAGAAGTTTTGTTTATAAATCCTGTTGTTTGTATGTTTCCCTTCATTGATTTTGAATCTCTATCATTTTTATGATTTCAGCAGTTGCACATGACATGAGTGTGTCAGATTTATTTTGTCATTCACTTTTCTATGCTTCATACAGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCACTCCATGTATCCAATGTTCAAGTTGTTGATCCAGCAACAGGGTTTGGACACTATCCATGACTGCTAATAGGTTGTGATGTTTTCCTTGTGCTAGAGCATTGTCAAACATTATTCTTTTGCAGGAAGCCTTGTAAGGTTGGTGTTCGATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGAGCCTCGGGATCTATAATCCCTCGTCCAGAAATCTTAAAGATAAGGACTACTCCCAGACCTACAGTTGGTACTGATCTAAACTCTATTACCCCTTTTGTTTTTATCTATTCACTTTGCTGTTATTTAGATTTTTTTTTTTTTGTTCTTTGCTAAACTTACATGTTCTGATGTGCTTCCATCGCAATTCTGTGTAGT

mRNA sequence

ATGGGTTGGAAGGCTGCTGAAAAGCTTATTAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTTATTAAGCGTGTCATTCGCACTCAAAATCGGGTTATTGTTGAGGGTAAAAACTTGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCACTCCATGTATCCAATGTTCAAGTTGTTGATCCAGCAACAGGGAAGCCTTGTAAGGTTGGTGTTCGATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGAGCCTCGGGATCTATAATCCCTCGTCCAGAAATCTTAAAGATAAGGACTACTCCCAGACCTACAGTTGGTACTGATCTAAACTCTATTACCCCTTTTGTTTTTATCTATTCACTTTGCTGTTATTTAGATTTTTTTTTTTTTGTTCTTTGCTAAACTTACATGTTCTGATGTGCTTCCATCGCAATTCTGTGTAGT

Coding sequence (CDS)

ATGGGTTGGAAGGCTGCTGAAAAGCTTATTAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTTATTAAGCGTGTCATTCGCACTCAAAATCGGGTTATTGTTGAGGGTAAAAACTTGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCACTCCATGTATCCAATGTTCAAGTTGTTGATCCAGCAACAGGGAAGCCTTGTAAGGTTGGTGTTCGATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGAGCCTCGGGATCTATAATCCCTCGTCCAGAAATCTTAAAGATAAGGACTACTCCCAGACCTACAGTTGGTACTGATCTAAACTCTATTACCCCTTTTGTTTTTATCTATTCACTTTGCTGTTATTTAGATTTTTTTTTTTTTGTTCTTTGCTAA

Protein sequence

MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPEILKIRTTPRPTVGTDLNSITPFVFIYSLCCYLDFFFFVLC

Homology

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BLAST of Carg28059 vs. NCBI nr
Match: XP_022931187.1 (uncharacterized protein LOC111437445 [Cucurbita moschata] >XP_022931188.1 uncharacterized protein LOC111437445 [Cucurbita moschata] >XP_022996037.1 uncharacterized protein LOC111491363 [Cucurbita maxima] >XP_022996038.1 uncharacterized protein LOC111491363 [Cucurbita maxima] >XP_023534268.1 uncharacterized protein LOC111795875 [Cucurbita pepo subsp. pepo] >XP_023534269.1 uncharacterized protein LOC111795875 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.2 bits (687), Expect = 8.7e-69
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

[Close]

BLAST of Carg28059 vs. NCBI nr
Match: XP_022146016.1 (uncharacterized protein LOC111015327 [Momordica charantia] >XP_022146017.1 uncharacterized protein LOC111015327 [Momordica charantia])

HSP 1 Score: 266.2 bits (679), Expect = 7.4e-68
Identity = 129/132 (97.73%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGLIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVG+RYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

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BLAST of Carg28059 vs. NCBI nr
Match: XP_007050544.1 (PREDICTED: 50S ribosomal protein L24 [Theobroma cacao] >XP_017984244.1 PREDICTED: 50S ribosomal protein L24 [Theobroma cacao] >EOX94701.1 KOW domain-containing protein [Theobroma cacao])

HSP 1 Score: 260.4 bits (664), Expect = 4.1e-66
Identity = 125/132 (94.70%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWK+LRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
            GHEGGIFTVEAPLH SNVQVVDP TGKPCKVGVRYLEDG+KVRVSRGIGASGSIIPRPE
Sbjct: 61  PGHEGGIFTVEAPLHASNVQVVDPVTGKPCKVGVRYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

[Close]

BLAST of Carg28059 vs. NCBI nr
Match: CDP14938.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 260.4 bits (664), Expect = 4.1e-66
Identity = 124/132 (93.94%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLI HWKILRGDNVMIIRGKDKGETG++KRVIR+QNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIHHWKILRGDNVMIIRGKDKGETGLVKRVIRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDP TGKPCKVG+RYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

[Close]

BLAST of Carg28059 vs. NCBI nr
Match: KHG24949.1 (50S ribosomal L24 [Gossypium arboreum])

HSP 1 Score: 260.4 bits (664), Expect = 4.1e-66
Identity = 124/132 (93.94%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVM+IRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMVIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLH SNVQV+DP TGKPCKVGV+YLEDG+KVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHASNVQVLDPVTGKPCKVGVKYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

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BLAST of Carg28059 vs. TAIR10
Match: AT5G23535.1 (KOW domain-containing protein)

HSP 1 Score: 244.6 bits (623), Expect = 4.2e-65
Identity = 119/146 (81.51%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG IKRVIR+QNRVIVEGKNL+KKHIK G
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
             HEGGIFTVEAPLH SNVQVVDP TG+PCKVGV+YLEDG+KVRV+RG G SGSIIPRPE
Sbjct: 61  PDHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTGTSGSIIPRPE 120

Query: 121 ILKIRTTPRPTVGTDLNSITPFVFIY 147
           ILKIR TPRPT     +  TP  F++
Sbjct: 121 ILKIRATPRPTTAGPKD--TPMEFVW 144

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BLAST of Carg28059 vs. TAIR10
Match: AT5G54600.1 (Translation protein SH3-like family protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-12
Identity = 37/107 (34.58%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 18  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHV 77
           GD V +I G+DKG+ G + ++    + ++++  NL  KH+K + +G  G I  +EAP+H 
Sbjct: 76  GDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREEGEPGQIVKIEAPIHS 135

Query: 78  SNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPEILK 124
           SNV +         +VG + LEDG KVR     G     I + ++LK
Sbjct: 136 SNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLK 182

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BLAST of Carg28059 vs. Swiss-Prot
Match: sp|Q4UMR8|RL24_RICFE (50S ribosomal protein L24 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=rplX PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.4e-23
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNLVKKHTKPNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]

BLAST of Carg28059 vs. Swiss-Prot
Match: sp|Q9ZCR6|RL24_RICPR (50S ribosomal protein L24 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=rplX PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V+II GK KG+ G + +V   +N V+V G NLVKKH K  +  EGGI T E+P
Sbjct: 5   KVKKGDEVVIITGKYKGKKGKVLKVFPEENTVVVSGVNLVKKHTKPNKMSEGGIITQESP 64

Query: 74  LHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]

BLAST of Carg28059 vs. Swiss-Prot
Match: sp|C3PP96|RL24_RICAE (50S ribosomal protein L24 OS=Rickettsia africae (strain ESF-5) OX=347255 GN=rplX PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-22
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]

BLAST of Carg28059 vs. Swiss-Prot
Match: sp|Q92GX7|RL24_RICCN (50S ribosomal protein L24 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=rplX PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-22
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]

BLAST of Carg28059 vs. Swiss-Prot
Match: sp|A8F2D6|RL24_RICM5 (50S ribosomal protein L24 OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=rplX PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-22
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVFGVNLVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSII 117
           +H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG II
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]

BLAST of Carg28059 vs. TrEMBL
Match: tr|W9QWA0|W9QWA0_9ROSA (50S ribosomal protein L24 OS=Morus notabilis OX=981085 GN=L484_002433 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.7e-66
Identity = 123/132 (93.18%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETG++KRVIR+QNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGIVKRVIRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQV+DP TGKPCKVG+RYLEDG+KVR SRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVLDPVTGKPCKVGIRYLEDGTKVRASRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

[Close]

BLAST of Carg28059 vs. TrEMBL
Match: tr|A0A068V4X6|A0A068V4X6_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00042440001 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.7e-66
Identity = 124/132 (93.94%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLI HWKILRGDNVMIIRGKDKGETG++KRVIR+QNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIHHWKILRGDNVMIIRGKDKGETGLVKRVIRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDP TGKPCKVG+RYLEDGSKVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

[Close]

BLAST of Carg28059 vs. TrEMBL
Match: tr|A0A061DRL4|A0A061DRL4_THECC (KOW domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_004312 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.7e-66
Identity = 125/132 (94.70%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWK+LRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
            GHEGGIFTVEAPLH SNVQVVDP TGKPCKVGVRYLEDG+KVRVSRGIGASGSIIPRPE
Sbjct: 61  PGHEGGIFTVEAPLHASNVQVVDPVTGKPCKVGVRYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

[Close]

BLAST of Carg28059 vs. TrEMBL
Match: tr|A0A0B0PKJ5|A0A0B0PKJ5_GOSAR (50S ribosomal L24 OS=Gossypium arboreum OX=29729 GN=F383_07711 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.7e-66
Identity = 124/132 (93.94%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVM+IRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMVIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLH SNVQV+DP TGKPCKVGV+YLEDG+KVRVSRGIGASGSIIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHASNVQVLDPVTGKPCKVGVKYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 121 ILKIRTTPRPTV 132

[Close]

BLAST of Carg28059 vs. TrEMBL
Match: tr|A0A2P5XWP4|A0A2P5XWP4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA12904 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.7e-66
Identity = 124/132 (93.94%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAEKLIRHWKILRGDNVM+IRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 247 MGWKAAEKLIRHWKILRGDNVMVIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 306

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPATGKPCKVGVRYLEDGSKVRVSRGIGASGSIIPRPE 120
           QGHEGGIFTVEAPLH SNVQV+DP TGKPCKVGV+YLEDG+KVRVSRGIGASGSIIPRPE
Sbjct: 307 QGHEGGIFTVEAPLHASNVQVLDPVTGKPCKVGVKYLEDGTKVRVSRGIGASGSIIPRPE 366

Query: 121 ILKIRTTPRPTV 133
           ILKIRTTPRPTV
Sbjct: 367 ILKIRTTPRPTV 378

The following BLAST results are available for this feature:

BLAST of Carg28059 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931187.1	8.7e-69	100.00	uncharacterized protein LOC111437445 [Cucurbita moschata] >XP_022931188.1 unchar...	[more]
XP_022146016.1	7.4e-68	97.73	uncharacterized protein LOC111015327 [Momordica charantia] >XP_022146017.1 uncha...	[more]
XP_007050544.1	4.1e-66	94.70	PREDICTED: 50S ribosomal protein L24 [Theobroma cacao] >XP_017984244.1 PREDICTED...	[more]
CDP14938.1	4.1e-66	93.94	unnamed protein product [Coffea canephora]	[more]
KHG24949.1	4.1e-66	93.94	50S ribosomal L24 [Gossypium arboreum]	[more]

BLAST of Carg28059 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23535.1	4.2e-65	81.51	KOW domain-containing protein	[more]
AT5G54600.1	1.8e-12	34.58	Translation protein SH3-like family protein	[more]

BLAST of Carg28059 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q4UMR8\|RL24_RICFE	8.4e-23	52.43	50S ribosomal protein L24 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) ...	[more]
sp\|Q9ZCR6\|RL24_RICPR	1.1e-22	51.46	50S ribosomal protein L24 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 G...	[more]
sp\|C3PP96\|RL24_RICAE	1.4e-22	51.46	50S ribosomal protein L24 OS=Rickettsia africae (strain ESF-5) OX=347255 GN=rplX...	[more]
sp\|Q92GX7\|RL24_RICCN	1.4e-22	51.46	50S ribosomal protein L24 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) ...	[more]
sp\|A8F2D6\|RL24_RICM5	1.4e-22	52.43	50S ribosomal protein L24 OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=rpl...	[more]

BLAST of Carg28059 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W9QWA0\|W9QWA0_9ROSA	2.7e-66	93.18	50S ribosomal protein L24 OS=Morus notabilis OX=981085 GN=L484_002433 PE=3 SV=1	[more]
tr\|A0A068V4X6\|A0A068V4X6_COFCA	2.7e-66	93.94	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00042440001 PE=3 ...	[more]
tr\|A0A061DRL4\|A0A061DRL4_THECC	2.7e-66	94.70	KOW domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_004312 PE=3 SV=1	[more]
tr\|A0A0B0PKJ5\|A0A0B0PKJ5_GOSAR	2.7e-66	93.94	50S ribosomal L24 OS=Gossypium arboreum OX=29729 GN=F383_07711 PE=3 SV=1	[more]
tr\|A0A2P5XWP4\|A0A2P5XWP4_GOSBA	2.7e-66	93.94	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA12904 PE=3 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR008991	Translation_prot_SH3-like_sf
IPR005825	Ribosomal_L24/26_CS
IPR014722	Rib_L2_dom2
IPR003256	Ribosomal_L24
IPR005824	KOW

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28059-RA	Carg28059-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 14..41 e-value: 3.4E-6 score: 36.6
IPR005824	KOW	PFAM	PF00467	KOW	coord: 17..48 e-value: 7.4E-9 score: 35.2
IPR003256	Ribosomal protein L24	TIGRFAM	TIGR01079	TIGR01079	coord: 14..107 e-value: 4.7E-30 score: 102.1
IPR003256	Ribosomal protein L24	PFAM	PF17136	ribosomal_L24	coord: 51..108 e-value: 3.0E-22 score: 78.7
IPR003256	Ribosomal protein L24	PANTHER	PTHR12903	MITOCHONDRIAL RIBOSOMAL PROTEIN L24	coord: 1..143
IPR003256	Ribosomal protein L24	HAMAP	MF_01326_B	Ribosomal_L24_B	coord: 13..107 score: 18.414
IPR014722	Ribosomal protein L2, domain 2	GENE3D	G3DSA:2.30.30.30		coord: 4..111 e-value: 9.5E-35 score: 121.1
None	No IPR available	PANTHER	PTHR12903:SF6	50S RIBOSOMAL PROTEIN L24	coord: 1..143
None	No IPR available	CDD	cd06089	KOW_RPL26	coord: 18..81 e-value: 5.89836E-23 score: 86.4145
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 18..35
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	SSF50104	Translation proteins SH3-like domain	coord: 10..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg28059	CmaCh02G017900	Cucurbita maxima (Rimu)	carcmaB0823
Carg28059	CmoCh02G018360	Cucurbita moschata (Rifu)	carcmoB0801

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None