Carg27930 (gene) Silver-seed gourd

Overview
NameCarg27930
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionnuclear inhibitor of protein phosphatase 1
LocationCucurbita_argyrosperma_scaffold_538 : 10258 .. 10614 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTTAAAGAAGGAAGTCTAGTTGGAAAATATGAGTCTCTTGTACAGACTACCATAATACCTAAAGGCAAGGAGCAGTCTTCTTTGAGGGGAGATAACATTTTTCCAAAAGGCGTGACTGGTAAATTACAAGAAATCTTGAATAGGGTAAAAAATCCATCGAAAAGTGAAATATATGATGACCTTTATGGAGAATCATTTTCGGGAAATGTGGGTACGTCGTGGGCATATTCTCCTAGTACTGCTAATAACCCGTCTTCCCCTCCTAAAGACTTGATTGGTAAAGCTTCAAGTGGGAACCATGAAGTAGATAACAGGACCAATATGAATAATGACAGTGATGATGATTTGTTT

mRNA sequence

ATGGGGGTTAAAGAAGGAAGTCTAGTTGGAAAATATGAGTCTCTTGTACAGACTACCATAATACCTAAAGGCAAGGAGCAGTCTTCTTTGAGGGGAGATAACATTTTTCCAAAAGGCGTGACTGGTAAATTACAAGAAATCTTGAATAGGGTAAAAAATCCATCGAAAAGTGAAATATATGATGACCTTTATGGAGAATCATTTTCGGGAAATGTGGGTACGTCGTGGGCATATTCTCCTAGTACTGCTAATAACCCGTCTTCCCCTCCTAAAGACTTGATTGGTAAAGCTTCAAGTGGGAACCATGAAGTAGATAACAGGACCAATATGAATAATGACAGTGATGATGATTTGTTT

Coding sequence (CDS)

ATGGGGGTTAAAGAAGGAAGTCTAGTTGGAAAATATGAGTCTCTTGTACAGACTACCATAATACCTAAAGGCAAGGAGCAGTCTTCTTTGAGGGGAGATAACATTTTTCCAAAAGGCGTGACTGGTAAATTACAAGAAATCTTGAATAGGGTAAAAAATCCATCGAAAAGTGAAATATATGATGACCTTTATGGAGAATCATTTTCGGGAAATGTGGGTACGTCGTGGGCATATTCTCCTAGTACTGCTAATAACCCGTCTTCCCCTCCTAAAGACTTGATTGGTAAAGCTTCAAGTGGGAACCATGAAGTAGATAACAGGACCAATATGAATAATGACAGTGATGATGATTTGTTT

Protein sequence

MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIYDDLYGESFSGNVGTSWAYSPSTANNPSSPPKDLIGKASSGNHEVDNRTNMNNDSDDDLF
Homology
[Close]
BLAST of Carg27930 vs. NCBI nr
Match: XP_022142477.1 (nuclear inhibitor of protein phosphatase 1 [Momordica charantia])

HSP 1 Score: 199.5 bits (506), Expect = 6.3e-48
Identity = 102/120 (85.00%), Postives = 109/120 (90.83%), Query Frame = 0 

Query: 1   MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIY 60
           +GVKEGSLVGKYESLVQTTIIP+GKEQSSLRGD I PKGVTGKLQEILNRVKNPSK  +Y
Sbjct: 311 IGVKEGSLVGKYESLVQTTIIPRGKEQSSLRGDGISPKGVTGKLQEILNRVKNPSKGGMY 370

Query: 61  DDLYGESFSGNVGTSWAYSPS-TANNPSSPPKDLIGKASSGNHEVDNRTNMNNDSDDDLF 120
           DDLYGESFSGNVG+SWAYS + TAN P SPP D IGKASSGNHE +NRTN+NNDSDDDLF
Sbjct: 371 DDLYGESFSGNVGSSWAYSSAVTANKPPSPPNDSIGKASSGNHEENNRTNINNDSDDDLF 430

[Close]
BLAST of Carg27930 vs. NCBI nr
Match: XP_023519780.1 (protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.8 bits (499), Expect = 4.1e-47
Identity = 105/120 (87.50%), Postives = 110/120 (91.67%), Query Frame = 0 

Query: 1   MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIY 60
           +GVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNI PKGVTGKLQEILNRVKNPSKS IY
Sbjct: 309 IGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNICPKGVTGKLQEILNRVKNPSKSGIY 368

Query: 61  DDLYGESFSGNVGTSWAYSPS-TANNPSSPPKDLIGKASSGNHEVDNRTNMNNDSDDDLF 120
           DDLYGESFSGNVG+SWAYS S TAN PSSPPK  IGKAS+ NHE +NRTN+ NDSDDDLF
Sbjct: 369 DDLYGESFSGNVGSSWAYSSSGTANKPSSPPKVSIGKASTENHEENNRTNI-NDSDDDLF 427

[Close]
BLAST of Carg27930 vs. NCBI nr
Match: XP_022973135.1 (protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog [Cucurbita maxima])

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 104/120 (86.67%), Postives = 110/120 (91.67%), Query Frame = 0 

Query: 1   MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIY 60
           +GVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNI PKGVTGKLQEILNRVKNPSKS IY
Sbjct: 309 IGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNICPKGVTGKLQEILNRVKNPSKSGIY 368

Query: 61  DDLYGESFSGNVGTSWAYSPS-TANNPSSPPKDLIGKASSGNHEVDNRTNMNNDSDDDLF 120
           DDLYGESFSGNVG+SWAYS S TAN PSSPP+  IGKAS+ NHE +NRTN+ NDSDDDLF
Sbjct: 369 DDLYGESFSGNVGSSWAYSSSGTANKPSSPPEVSIGKASTENHEENNRTNI-NDSDDDLF 427

[Close]
BLAST of Carg27930 vs. NCBI nr
Match: XP_022927131.1 (protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog [Cucurbita moschata])

HSP 1 Score: 194.9 bits (494), Expect = 1.6e-46
Identity = 104/120 (86.67%), Postives = 109/120 (90.83%), Query Frame = 0 

Query: 1   MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIY 60
           +GVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNI PKGVTGKLQEILNRVKNPSKS IY
Sbjct: 309 IGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNICPKGVTGKLQEILNRVKNPSKSGIY 368

Query: 61  DDLYGESFSGNVGTSWAYSPS-TANNPSSPPKDLIGKASSGNHEVDNRTNMNNDSDDDLF 120
           DDLYGESFSGNVG+SWAYS S TAN PSSPPK  IGKAS+ NHE +NR N+ NDSDDDLF
Sbjct: 369 DDLYGESFSGNVGSSWAYSSSGTANKPSSPPKVSIGKASTENHEENNRANI-NDSDDDLF 427

[Close]
BLAST of Carg27930 vs. NCBI nr
Match: XP_004139507.1 (PREDICTED: nuclear inhibitor of protein phosphatase 1 [Cucumis sativus] >XP_004139508.1 PREDICTED: nuclear inhibitor of protein phosphatase 1 [Cucumis sativus] >XP_011654685.1 PREDICTED: nuclear inhibitor of protein phosphatase 1 [Cucumis sativus] >XP_011654689.1 PREDICTED: nuclear inhibitor of protein phosphatase 1 [Cucumis sativus] >KGN64977.1 hypothetical protein Csa_1G170010 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 5.2e-42
Identity = 98/120 (81.67%), Postives = 105/120 (87.50%), Query Frame = 0 

Query: 1   MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIY 60
           +GVKEGSLVGKYESLVQTTIIPKGKE SSLRGDNI PKGVTGKLQEILNRVKNPSKS +Y
Sbjct: 310 IGVKEGSLVGKYESLVQTTIIPKGKEPSSLRGDNISPKGVTGKLQEILNRVKNPSKSGVY 369

Query: 61  DDLYGESFSGNVGTSWAYSPS-TANNPSSPPKDLIGKASSGNHEVDNRTNMNNDSDDDLF 120
           DDLYGESFSGNVG+SWAYS + +AN  SSPPKDLI +    NHE +NRTN  NDSDDDLF
Sbjct: 370 DDLYGESFSGNVGSSWAYSSAGSANKLSSPPKDLIPR----NHEENNRTN-TNDSDDDLF 424

[Close]
BLAST of Carg27930 vs. TAIR10
Match: AT5G47790.1 (SMAD/FHA domain-containing protein )

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-15
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 0 

Query: 1   MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIY 60
           + VKEGSLVGKYESLV+ T+IPKGK +           GVT +LQE +N +K   K+ IY
Sbjct: 266 INVKEGSLVGKYESLVRVTLIPKGKVKEEKAFTGGTRGGVTDRLQEAMNMLKRGPKTGIY 325

Query: 61  DDLY-GESFSGNVGTSWA 78
           DDLY G+S +  VGTSWA
Sbjct: 326 DDLYGGDSLAKAVGTSWA 343

[Close]
BLAST of Carg27930 vs. Swiss-Prot
Match: sp|Q9FIK2|PP1R8_ARATH (Protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g47790 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-14
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 0 

Query: 1   MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIY 60
           + VKEGSLVGKYESLV+ T+IPKGK +           GVT +LQE +N +K   K+ IY
Sbjct: 266 INVKEGSLVGKYESLVRVTLIPKGKVKEEKAFTGGTRGGVTDRLQEAMNMLKRGPKTGIY 325

Query: 61  DDLY-GESFSGNVGTSWA 78
           DDLY G+S +  VGTSWA
Sbjct: 326 DDLYGGDSLAKAVGTSWA 343

[Close]
BLAST of Carg27930 vs. TrEMBL
Match: tr|A0A0A0LVY0|A0A0A0LVY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G170010 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.4e-42
Identity = 98/120 (81.67%), Postives = 105/120 (87.50%), Query Frame = 0 

Query: 1   MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIY 60
           +GVKEGSLVGKYESLVQTTIIPKGKE SSLRGDNI PKGVTGKLQEILNRVKNPSKS +Y
Sbjct: 310 IGVKEGSLVGKYESLVQTTIIPKGKEPSSLRGDNISPKGVTGKLQEILNRVKNPSKSGVY 369

Query: 61  DDLYGESFSGNVGTSWAYSPS-TANNPSSPPKDLIGKASSGNHEVDNRTNMNNDSDDDLF 120
           DDLYGESFSGNVG+SWAYS + +AN  SSPPKDLI +    NHE +NRTN  NDSDDDLF
Sbjct: 370 DDLYGESFSGNVGSSWAYSSAGSANKLSSPPKDLIPR----NHEENNRTN-TNDSDDDLF 424

[Close]
BLAST of Carg27930 vs. TrEMBL
Match: tr|A0A1S4E2B7|A0A1S4E2B7_CUCME (nuclear inhibitor of protein phosphatase 1 OS=Cucumis melo OX=3656 GN=LOC103498201 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-38
Identity = 93/120 (77.50%), Postives = 101/120 (84.17%), Query Frame = 0 

Query: 1   MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIY 60
           +GVKEGSLVGKYESLVQTTIIPKGKE  SLRG+NI PKGVTGKLQEILNRVKNPSK+ +Y
Sbjct: 310 IGVKEGSLVGKYESLVQTTIIPKGKEPFSLRGENISPKGVTGKLQEILNRVKNPSKTGVY 369

Query: 61  DDLYGESFSGNVGTSWAYSPS-TANNPSSPPKDLIGKASSGNHEVDNRTNMNNDSDDDLF 120
           DDLYGESFSGNVG+SWAYS + +AN  SSPPKDLI +    N    NRTN  NDSDDDLF
Sbjct: 370 DDLYGESFSGNVGSSWAYSSAGSANRLSSPPKDLITRKLEDN----NRTN-TNDSDDDLF 424

[Close]
BLAST of Carg27930 vs. TrEMBL
Match: tr|A0A2I4F8X5|A0A2I4F8X5_9ROSI (nuclear inhibitor of protein phosphatase 1 OS=Juglans regia OX=51240 GN=LOC108996573 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-31
Identity = 79/120 (65.83%), Postives = 93/120 (77.50%), Query Frame = 0 

Query: 1   MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIY 60
           +G+KEGSLVGKYESLVQ+T+IPKGK QSS++ DN   KGVT KLQE+LN+VK  SKS IY
Sbjct: 295 VGMKEGSLVGKYESLVQSTVIPKGKPQSSVKEDNTSQKGVTHKLQEVLNKVKTTSKSGIY 354

Query: 61  DDLYGESFSGNVGTSWAY-SPSTANNPSSPPKDLIGKASSGNHEVDNRTNMNNDSDDDLF 120
           DDLYGESFSG VG SWAY S S+   P S  KD+ GKASSG     N  N+++D+DDDLF
Sbjct: 355 DDLYGESFSGKVGFSWAYPSVSSGGRPDSAIKDIQGKASSG-----NSGNVDDDNDDDLF 409

[Close]
BLAST of Carg27930 vs. TrEMBL
Match: tr|A0A2P5EXR1|A0A2P5EXR1_9ROSA (Serine/threonine protein kinase OS=Trema orientalis OX=63057 GN=TorRG33x02_139740 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-30
Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = 0 

Query: 1   MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIY 60
           +GVKEGSLVGKYESLVQTT+IP+GK+Q+  + DN   KGVTGKLQE+LN+VK+ SKS IY
Sbjct: 309 IGVKEGSLVGKYESLVQTTVIPRGKDQNFAKEDNSSQKGVTGKLQEVLNKVKSASKSGIY 368

Query: 61  DDLYGESFSGNVGTSWAYSP-STANNPSSPPKDLIGKASSGNHEVDNRTNMNNDSDDDLF 120
           DDLYGESF+G VG+SWAYS  S+   P+SP KD   K+S+    + N +++N+D DDDLF
Sbjct: 369 DDLYGESFAGKVGSSWAYSSISSGGRPASPTKDSEEKSSNVKPGI-NSSHVNDDDDDDLF 427

[Close]
BLAST of Carg27930 vs. TrEMBL
Match: tr|A0A2N9EWK5|A0A2N9EWK5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6913 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-30
Identity = 74/120 (61.67%), Postives = 91/120 (75.83%), Query Frame = 0 

Query: 1   MGVKEGSLVGKYESLVQTTIIPKGKEQSSLRGDNIFPKGVTGKLQEILNRVKNPSKSEIY 60
           +GVKEGSLVGKYE L++TT+IPKGK+QSS++ D    KGVT KLQE+LN+VK   K  IY
Sbjct: 307 VGVKEGSLVGKYEDLIRTTVIPKGKQQSSVKEDTTSQKGVTNKLQEVLNKVKTTPKGGIY 366

Query: 61  DDLYGESFSGNVGTSWAYSP-STANNPSSPPKDLIGKASSGNHEVDNRTNMNNDSDDDLF 120
           DDLYGESFSG +G+SWAYS  S+   P+SP KD  GK SSG     N +N++ D+DDDLF
Sbjct: 367 DDLYGESFSGKLGSSWAYSSVSSGVRPASPTKDTQGKTSSG-----NSSNVDEDNDDDLF 421

The following BLAST results are available for this feature:
BLAST of Carg27930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022142477.16.3e-4885.00nuclear inhibitor of protein phosphatase 1 [Momordica charantia][more]
XP_023519780.14.1e-4787.50protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog [Cucurbita pep... [more]
XP_022973135.11.2e-4686.67protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog [Cucurbita max... [more]
XP_022927131.11.6e-4686.67protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog [Cucurbita mos... [more]
XP_004139507.15.2e-4281.67PREDICTED: nuclear inhibitor of protein phosphatase 1 [Cucumis sativus] >XP_0041... [more]
BLAST of Carg27930 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47790.12.3e-1555.13SMAD/FHA domain-containing protein [more]
BLAST of Carg27930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FIK2|PP1R8_ARATH4.1e-1455.13Protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog OS=Arabidopsis... [more]
BLAST of Carg27930 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVY0|A0A0A0LVY0_CUCSA3.4e-4281.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G170010 PE=4 SV=1[more]
tr|A0A1S4E2B7|A0A1S4E2B7_CUCME1.0e-3877.50nuclear inhibitor of protein phosphatase 1 OS=Cucumis melo OX=3656 GN=LOC1034982... [more]
tr|A0A2I4F8X5|A0A2I4F8X5_9ROSI2.1e-3165.83nuclear inhibitor of protein phosphatase 1 OS=Juglans regia OX=51240 GN=LOC10899... [more]
tr|A0A2P5EXR1|A0A2P5EXR1_9ROSA1.4e-3062.50Serine/threonine protein kinase OS=Trema orientalis OX=63057 GN=TorRG33x02_13974... [more]
tr|A0A2N9EWK5|A0A2N9EWK5_FAGSY1.8e-3061.67Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6913 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27930-RACarg27930-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..94
NoneNo IPR availablePANTHERPTHR23308NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1coord: 1..119
NoneNo IPR availablePANTHERPTHR23308:SF43SUBFAMILY NOT NAMEDcoord: 1..119

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27930CmaCh18G006330Cucurbita maxima (Rimu)carcmaB1342
Carg27930CmoCh18G006210Cucurbita moschata (Rifu)carcmoB1304
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None