Carg27910 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27910
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	HTH-type transcriptional regulator
Location	Cucurbita_argyrosperma_scaffold_478 : 18396 .. 18863 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATTTGCATTTCCTCCGATTCCGTGAACGTGGCCACCGCCAAGCTGATTCTAACCGACGGCACGCTGCTCGAGTTCTCCTACCCGGTCAAGGTCTCCTTTCTCCTACACAAACACCCCGCCACTTTCATTTGCAACTCCGACGACATGGACTTCGACGACGCCGTTTACGCCGTCCATGACGACGACCACCTCCAACTCGGCCACCTTTACTTTGCCCTGCCCTTGGACAGGCTCAACCAGCCGCTGCACCCGGAGGAGATGGCCGCACTCGCCGTCAAGGCCAGCTCCGCGCTTATCAAGGCCGGCGCCGGAGGGACTGAAAAATCTGGATCTCGACGCACGGCGGTCTCCCCTCTCGCGTTTTCCGACGAGGAGTTTAGGAAGCCTCCGGGGAGGAGCTTGCAGAAGGGGAGTGGTGGGGGTAGAAAATTTAGGGCGAAGTTGAGTGCAATTCCGGAATAA

mRNA sequence

ATGGGTATTTGCATTTCCTCCGATTCCGTGAACGTGGCCACCGCCAAGCTGATTCTAACCGACGGCACGCTGCTCGAGTTCTCCTACCCGGTCAAGGTCTCCTTTCTCCTACACAAACACCCCGCCACTTTCATTTGCAACTCCGACGACATGGACTTCGACGACGCCGTTTACGCCGTCCATGACGACGACCACCTCCAACTCGGCCACCTTTACTTTGCCCTGCCCTTGGACAGGCTCAACCAGCCGCTGCACCCGGAGGAGATGGCCGCACTCGCCGTCAAGGCCAGCTCCGCGCTTATCAAGGCCGGCGCCGGAGGGACTGAAAAATCTGGATCTCGACGCACGGCGGTCTCCCCTCTCGCGTTTTCCGACGAGGAGTTTAGGAAGCCTCCGGGGAGGAGCTTGCAGAAGGGGAGTGGTGGGGGTAGAAAATTTAGGGCGAAGTTGAGTGCAATTCCGGAATAA

Coding sequence (CDS)

ATGGGTATTTGCATTTCCTCCGATTCCGTGAACGTGGCCACCGCCAAGCTGATTCTAACCGACGGCACGCTGCTCGAGTTCTCCTACCCGGTCAAGGTCTCCTTTCTCCTACACAAACACCCCGCCACTTTCATTTGCAACTCCGACGACATGGACTTCGACGACGCCGTTTACGCCGTCCATGACGACGACCACCTCCAACTCGGCCACCTTTACTTTGCCCTGCCCTTGGACAGGCTCAACCAGCCGCTGCACCCGGAGGAGATGGCCGCACTCGCCGTCAAGGCCAGCTCCGCGCTTATCAAGGCCGGCGCCGGAGGGACTGAAAAATCTGGATCTCGACGCACGGCGGTCTCCCCTCTCGCGTTTTCCGACGAGGAGTTTAGGAAGCCTCCGGGGAGGAGCTTGCAGAAGGGGAGTGGTGGGGGTAGAAAATTTAGGGCGAAGTTGAGTGCAATTCCGGAATAA

Protein sequence

MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAVHDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSPLAFSDEEFRKPPGRSLQKGSGGGRKFRAKLSAIPE

Homology

[Close]

BLAST of Carg27910 vs. NCBI nr
Match: XP_022928071.1 (uncharacterized protein LOC111434966 [Cucurbita moschata])

HSP 1 Score: 305.4 bits (781), Expect = 1.1e-79
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV
Sbjct: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120
           HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP
Sbjct: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120

Query: 121 LAFSDEEFRKPPGRSLQKGSGGGRKFRAKLSAIPE 156
           LAFSDEEFRKPPGRSLQKGSGGGRKFRAKLSAIPE
Sbjct: 121 LAFSDEEFRKPPGRSLQKGSGGGRKFRAKLSAIPE 155

[Close]

BLAST of Carg27910 vs. NCBI nr
Match: XP_023512544.1 (uncharacterized protein LOC111777254 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.4 bits (773), Expect = 9.0e-79
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV
Sbjct: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120
           HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP
Sbjct: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120

Query: 121 LAFSDEEFRKPPGRSLQKGSGGGRKFRAKLSAIPE 156
           LAFSDEEFRKPP RSLQKGSGGGRKFRAKLSAIPE
Sbjct: 121 LAFSDEEFRKPPRRSLQKGSGGGRKFRAKLSAIPE 155

[Close]

BLAST of Carg27910 vs. NCBI nr
Match: XP_022971678.1 (uncharacterized protein LOC111470350 [Cucurbita maxima])

HSP 1 Score: 296.6 bits (758), Expect = 5.0e-77
Identity = 151/155 (97.42%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV
Sbjct: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120
           HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP
Sbjct: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120

Query: 121 LAFSDEEFRKPPGRSLQKGSGGGRKFRAKLSAIPE 156
           +AFSDEEFRKPP R LQKGSG GRKFRAKLSAIPE
Sbjct: 121 VAFSDEEFRKPPRRGLQKGSGRGRKFRAKLSAIPE 155

[Close]

BLAST of Carg27910 vs. NCBI nr
Match: XP_022149511.1 (uncharacterized protein LOC111017924 [Momordica charantia])

HSP 1 Score: 219.5 bits (558), Expect = 7.7e-54
Identity = 118/155 (76.13%), Postives = 128/155 (82.58%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MGICISSDS NVATAKLILTDGTLLE+SYPVKVS++L K PA+FICNSD+MDFDD V A+
Sbjct: 1   MGICISSDSTNVATAKLILTDGTLLEYSYPVKVSYVLQKDPASFICNSDEMDFDDVVSAI 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120
            D D LQLG LYFALPLDRLNQPLH EEMAALAVKAS+AL+KAG    EK GSRRTA+SP
Sbjct: 61  DDGDELQLGQLYFALPLDRLNQPLHAEEMAALAVKASAALMKAGG---EKCGSRRTAISP 120

Query: 121 LAFSDEEFRKPPGRSLQKGSGGGRKFRAKLSAIPE 156
             FSDEEF K      +KGSG  RKF AKLSAIPE
Sbjct: 121 ALFSDEEFGKVQRSVAKKGSGRRRKFTAKLSAIPE 152

[Close]

BLAST of Carg27910 vs. NCBI nr
Match: XP_023007426.1 (uncharacterized protein LOC111499928 [Cucurbita maxima])

HSP 1 Score: 213.8 bits (543), Expect = 4.2e-52
Identity = 113/157 (71.97%), Postives = 132/157 (84.08%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MGICISSDS NV+TAKLIL+DGTLLE+SYPVKVS++L K PA+FICNSDDMDF+D V AV
Sbjct: 1   MGICISSDSPNVSTAKLILSDGTLLEYSYPVKVSYVLQKDPASFICNSDDMDFNDVVNAV 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120
            D+D LQLG LYFALPL++LN+PLH E+MAALAVKASSAL+KAG GG+EK GSRR    P
Sbjct: 61  DDEDELQLGQLYFALPLEKLNKPLHAEDMAALAVKASSALMKAGGGGSEKCGSRR----P 120

Query: 121 LAFSDEEFRKPPGRSLQKG--SGGGRKFRAKLSAIPE 156
           + FS+EE RK P R ++KG  +GG RKF AKL AIPE
Sbjct: 121 VVFSEEELRKGPRRGVKKGTRNGGSRKFTAKLCAIPE 153

[Close]

BLAST of Carg27910 vs. TAIR10
Match: AT2G23690.1 (unknown protein)

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-34
Identity = 85/163 (52.15%), Postives = 103/163 (63.19%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MGIC S +S  VATAKLIL DG ++EF+ PVKV ++L K+P  FICNSDDMDFD+ V A+
Sbjct: 1   MGICSSYESTQVATAKLILHDGRMMEFTSPVKVGYVLQKNPMCFICNSDDMDFDNVVSAI 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAG-GTEKSGSRRTAVS 120
             D+  QLG LYFALPL  L+  L  EEMAALAVKASSAL+++G   G +K   RR  VS
Sbjct: 61  SADEEFQLGQLYFALPLSSLHHSLKAEEMAALAVKASSALMRSGGSCGRDKCRCRRKCVS 120

Query: 121 PLAFSDEEF-------RKPPGRSLQKGSGGGRKFRAKLSAIPE 156
           P+ FS               G+       G RK+ AKLS I E
Sbjct: 121 PVIFSARRVAAVGANGETRNGKRRXXXXXGRRKYAAKLSKIEE 163

[Close]

BLAST of Carg27910 vs. TAIR10
Match: AT3G50800.1 (unknown protein)

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-32
Identity = 83/165 (50.30%), Postives = 102/165 (61.82%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MG C S +S    TAKLIL DGTL EFS PVKV  +L K+P +F+CNSDDMDFDDAV AV
Sbjct: 1   MGACASRESRRTETAKLILPDGTLQEFSTPVKVWQILQKNPTSFVCNSDDMDFDDAVLAV 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120
              + L+ G LYF LPL  LN PL  +EMAALAVKASSAL K+G GG             
Sbjct: 61  PGSEDLRPGELYFVLPLTWLNHPLRADEMAALAVKASSALAKSGGGG------------- 120

Query: 121 LAFSDEEFRKPPGRSLQKGSGGG----------RKFRAKLSAIPE 156
           L+++DE+  +   R +++   GG          RKF A+LS+I E
Sbjct: 121 LSYNDEDVGECRVRRVKRNGCGGRXXXXXXXGRRKFTAELSSIAE 152

[Close]

BLAST of Carg27910 vs. TAIR10
Match: AT4G37240.1 (unknown protein)

HSP 1 Score: 130.6 bits (327), Expect = 8.5e-31
Identity = 79/145 (54.48%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MGIC SS+S  VATAKLIL DG ++EF+ PVKV ++L K+P  FICNSDDMDFDDAV A+
Sbjct: 1   MGICSSSESTQVATAKLILQDGRMMEFANPVKVGYVLLKYPMCFICNSDDMDFDDAVAAI 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120
             D+ LQLG +YFALPL  L QPL  EEMAALAVKASS               RR  V P
Sbjct: 61  SADEELQLGQIYFALPLCWLRQPLKAEEMAALAVKASS-----XXXXXXXXXCRRKCVEP 120

Query: 121 LAFSDEEFRKPPGRSLQKGSGGGRK 146
           +       R   G     GSG GR+
Sbjct: 121 IVSDKLRMRVGSGDD-TVGSGSGRR 139

[Close]

BLAST of Carg27910 vs. TAIR10
Match: AT5G66580.1 (unknown protein)

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-30
Identity = 80/162 (49.38%), Postives = 99/162 (61.11%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MG C S +S+   +AKLIL DGTL EFS PVKV  +L K+P +F+CNSD+MDFDDAV AV
Sbjct: 1   MGACASRESLRSDSAKLILLDGTLQEFSSPVKVWQILQKNPTSFVCNSDEMDFDDAVSAV 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120
             ++ L+ G LYF LPL  LN PL  EEMAALAVKASSAL K+G  G        T    
Sbjct: 61  AGNEELRSGQLYFVLPLTWLNHPLRAEEMAALAVKASSALTKSGGVGWVSGDDDVTT--- 120

Query: 121 LAFSDEEFRKPPGRSLQKGSGGG-------RKFRAKLSAIPE 156
              S++ ++K     ++   GGG       R+F A LS I E
Sbjct: 121 ---SEKTYQKKNIAGVKTNGGGGRGCGKGKRRFTANLSTIAE 156

[Close]

BLAST of Carg27910 vs. TAIR10
Match: AT1G21010.1 (unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-11
Identity = 50/169 (29.59%), Postives = 79/169 (46.75%), Query Frame = 0


Query: 1   MGICIS---SDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPAT-------------F 60
           MGIC+S    DS +  T K++  +G L E++ PV  S +L    A              F
Sbjct: 1   MGICVSFRREDSNSSPTVKIVTVNGDLREYNVPVIASQVLEAESAAAXXXXXXXRPSSYF 60

Query: 61  ICNSDDMDFDDAVYAVHDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAG 120
           IC+SD + +DD + A+  ++ LQ   +YF LP+ +    L   +MAALAVKAS A+    
Sbjct: 61  ICDSDSLYYDDFIPAIKSEEPLQADQIYFVLPISKRQSRLTASDMAALAVKASVAI--QN 120

Query: 121 AGGTEKSGSRRTAVSPLAFSDEEFRKPPGRSLQKGSGGGRKFRAKLSAI 154
           +   E    ++  +SP+           G   +     GR F +K + +
Sbjct: 121 SVKKESRRRKKVRISPVMMLTGSNDSVNGNGSETTVKKGRPFVSKTAPV 167

[Close]

BLAST of Carg27910 vs. TrEMBL
Match: tr|A0A1S3C5X7|A0A1S3C5X7_CUCME (uncharacterized protein LOC103497404 OS=Cucumis melo OX=3656 GN=LOC103497404 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 7.4e-45
Identity = 104/158 (65.82%), Postives = 118/158 (74.68%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MGIC+SSDS NVATAKLIL DGTL+E+SYPVKVS++L KHP++FICNSDDMDFDD VYAV
Sbjct: 1   MGICVSSDSTNVATAKLILIDGTLVEYSYPVKVSYVLQKHPSSFICNSDDMDFDDVVYAV 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVK-ASSALIKAGAGGTEKSGSRRTAVS 120
            +DD LQLG LYFALPL+RLNQ +  EEMAALAVK              EK GS+ TAV 
Sbjct: 61  DEDDELQLGQLYFALPLERLNQRMQAEEMAALAVKXXXXXXXXXXXXXMEKCGSKGTAVI 120

Query: 121 PLAFSDEE--FRKPPGRSLQKGSGGGRKFRAKLSAIPE 156
           P+   +EE  FRK P +   K  GG RKFRAKLSAIPE
Sbjct: 121 PVGNCEEEEGFRKEPRKGGLKKKGGSRKFRAKLSAIPE 158

[Close]

BLAST of Carg27910 vs. TrEMBL
Match: tr|A0A0A0LQ02|A0A0A0LQ02_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G286540 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.5e-42
Identity = 102/160 (63.75%), Postives = 116/160 (72.50%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MGIC+SS S NVATAKLIL DGTL+E+SYPVKVS++LHKHPA+FICNSDDMDFDD VYAV
Sbjct: 1   MGICVSSHSTNVATAKLILVDGTLVEYSYPVKVSYVLHKHPASFICNSDDMDFDDVVYAV 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAAL---AVKASSALIKAGAGGTEKSGSRRTA 120
            +DD LQLG LYFALPL+RLNQ +  EEMAAL                   EK GSR TA
Sbjct: 61  DEDDELQLGQLYFALPLERLNQRMQAEEMAALXXXXXXXXXXXXXXXXXXXEKCGSRGTA 120

Query: 121 VSPLA-FSDEEFRKPPGR-SLQKGSGGGRKFRAKLSAIPE 156
           V P+  + +EE RK   +  L+K  GG RKFRAKLSAIPE
Sbjct: 121 VIPVGNWEEEELRKGSRKVGLKKKKGGSRKFRAKLSAIPE 160

[Close]

BLAST of Carg27910 vs. TrEMBL
Match: tr|A0A0A0KJB4|A0A0A0KJB4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G488320 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.0e-41
Identity = 98/156 (62.82%), Postives = 119/156 (76.28%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MGIC SS+S  VATAKLIL DG+L EFSYPVKVS++L K+P+ FICNSD+MDFDDA+ A+
Sbjct: 1   MGICSSSESTAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALSAI 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120
           +DD+ LQLG LYFALPL+RL QPL  EEMAALAVKA+SAL+K   G  +K G RR +VSP
Sbjct: 61  NDDEELQLGQLYFALPLNRLKQPLQAEEMAALAVKANSALMKCSGG--DKCGHRRRSVSP 120

Query: 121 LAFSDEEFRKPPGRSLQKGSGGGR-KFRAKLSAIPE 156
           + F+ EE +     +  +G  GGR KF A L AIPE
Sbjct: 121 VVFTVEELKTRKRVAAGRGGAGGRKKFAANLMAIPE 154

[Close]

BLAST of Carg27910 vs. TrEMBL
Match: tr|A0A1S3B0H3|A0A1S3B0H3_CUCME (uncharacterized protein LOC103484721 OS=Cucumis melo OX=3656 GN=LOC103484721 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.7e-41
Identity = 97/156 (62.18%), Postives = 119/156 (76.28%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MGIC SS+S  VATAKLIL DG+L EFSYPVKVS++L K+P+ FICNSD+MDFDDA+ A+
Sbjct: 1   MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALSAI 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120
           +DD+ LQ+G LYFALPL+RL QPL  EEMAALAVKA+SAL+K   G  +K G RR +VSP
Sbjct: 61  NDDEELQIGQLYFALPLNRLRQPLQAEEMAALAVKANSALMKCSGG--DKCGHRRRSVSP 120

Query: 121 LAFSDEEFRKPPGRSLQKGSGGGR-KFRAKLSAIPE 156
           + F+ EE +     +  +G  GGR KF A L AIPE
Sbjct: 121 VVFTVEELKTRKRVAAGRGGAGGRKKFAANLMAIPE 154

[Close]

BLAST of Carg27910 vs. TrEMBL
Match: tr|A0A2C9UW66|A0A2C9UW66_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G097000 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 8.4e-41
Identity = 98/170 (57.65%), Postives = 116/170 (68.24%), Query Frame = 0


Query: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60
           MG+C SS+S  VATAKLIL DG L E+SYPVKVS++L K+P  FICN+D+M+FDD V A+
Sbjct: 1   MGVCYSSESTRVATAKLILQDGRLQEYSYPVKVSYVLQKNPTYFICNADEMEFDDVVSAI 60

Query: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120
           +DD+ L  GHLYFALPL RL  PL PEEMAALAVKASSAL+K+  GG EK G RR + SP
Sbjct: 61  NDDEELLPGHLYFALPLSRLKHPLQPEEMAALAVKASSALMKSNNGG-EKYGCRRNSGSP 120

Query: 121 LAFSDEEFRKPPGR---------------SLQKGSGGGRKFRAKLSAIPE 156
             +S E   K  GR                 ++  GGGRKF A LSAIPE
Sbjct: 121 FVYSGESDGKSSGRMTAPAATGVSGGSGKGWRRNGGGGRKFTAMLSAIPE 169

The following BLAST results are available for this feature:

BLAST of Carg27910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928071.1	1.1e-79	100.00	uncharacterized protein LOC111434966 [Cucurbita moschata]	[more]
XP_023512544.1	9.0e-79	99.35	uncharacterized protein LOC111777254 [Cucurbita pepo subsp. pepo]	[more]
XP_022971678.1	5.0e-77	97.42	uncharacterized protein LOC111470350 [Cucurbita maxima]	[more]
XP_022149511.1	7.7e-54	76.13	uncharacterized protein LOC111017924 [Momordica charantia]	[more]
XP_023007426.1	4.2e-52	71.97	uncharacterized protein LOC111499928 [Cucurbita maxima]	[more]

BLAST of Carg27910 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23690.1	1.3e-34	52.15	unknown protein	[more]
AT3G50800.1	2.7e-32	50.30	unknown protein	[more]
AT4G37240.1	8.5e-31	54.48	unknown protein	[more]
AT5G66580.1	3.2e-30	49.38	unknown protein	[more]
AT1G21010.1	2.6e-11	29.59	unknown protein	[more]

BLAST of Carg27910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27910 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5X7\|A0A1S3C5X7_CUCME	7.4e-45	65.82	uncharacterized protein LOC103497404 OS=Cucumis melo OX=3656 GN=LOC103497404 PE=...	[more]
tr\|A0A0A0LQ02\|A0A0A0LQ02_CUCSA	1.5e-42	63.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G286540 PE=4 SV=1	[more]
tr\|A0A0A0KJB4\|A0A0A0KJB4_CUCSA	1.0e-41	62.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G488320 PE=4 SV=1	[more]
tr\|A0A1S3B0H3\|A0A1S3B0H3_CUCME	1.7e-41	62.18	uncharacterized protein LOC103484721 OS=Cucumis melo OX=3656 GN=LOC103484721 PE=...	[more]
tr\|A0A2C9UW66\|A0A2C9UW66_MANES	8.4e-41	57.65	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G097000 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27910-RA	Carg27910-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..155 e-value: 4.5E-25 score: 89.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..155
None	No IPR available	PANTHER	PTHR33052:SF17	SUBFAMILY NOT NAMED	coord: 1..155
None	No IPR available	PANTHER	PTHR33052	FAMILY NOT NAMED	coord: 1..155

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27910	Cla020176	Watermelon (97103) v1	carwmB0851
Carg27910	Csa2G286540	Cucumber (Chinese Long) v2	carcuB0866
Carg27910	MELO3C020884	Melon (DHL92) v3.5.1	carmeB0840
Carg27910	ClCG02G012900	Watermelon (Charleston Gray)	carwcgB0824
Carg27910	CSPI02G14420	Wild cucumber (PI 183967)	carcpiB0886
Carg27910	Cucsa.366720	Cucumber (Gy14) v1	carcgyB0971
Carg27910	CmaCh20G011510	Cucurbita maxima (Rimu)	carcmaB1178
Carg27910	CmoCh20G011800	Cucurbita moschata (Rifu)	carcmoB1147
Carg27910	Lsi10G005800	Bottle gourd (USVL1VR-Ls)	carlsiB773
Carg27910	Cp4.1LG16g00540	Cucurbita pepo (Zucchini)	carcpeB1185
Carg27910	CsGy2G014320	Cucumber (Gy14) v2	carcgybB0840
Carg27910	MELO3C020884.2	Melon (DHL92) v3.6.1	carmedB0851
Carg27910	CsaV3_2G016980	Cucumber (Chinese Long) v3	carcucB0891
Carg27910	Cla97C02G038580	Watermelon (97103) v2	carwmbB0887
Carg27910	Bhi10G001779	Wax gourd	carwgoB0991

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None