Carg27777 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATACCATATAAAATCCTGCCCCACTCATCGGCCTGCGATCTCTTCTCGTTTTTTCCTGCCTCTGCTGCCGCCGGGAATTCTTTGAACTCCTTGCTTCTATCTACGTTCGCCATGGTAACTACAGTTTCTTGTTTGCTCTGTTTCCACTTGTTCTCTCCTATTGCCGGTTCTTGAATGCCCTAAATTATTCGTTAGGTTTTTACAATGGACTGTGTTGATTTGATTTTGTCTCCTTCTTTCTGTATCTAGTCGCTGGTAGCAAATGAGGATTTTCAGCACATTCTTCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTTTGGCTAACATCGTCTGCAAGAAGGCTGATGTCGACATGAACAAGAGGTATTCTTTTCCCTACTTTTCGCTGTTTTTTTTTTTTTTTTTCATTCATTGCGGTTTATCGTTTATCTAGTTTGGGAGAAAAATTCGAGAATTAGGAGTATTACAAGGGTTTTGTCCGTTGTGTTTAATTTTGCCTCTTAGATCGATGCTACGCATTGAGGTTTCCGTTCCTAATTATTTATCAAGAAGTTTATGCTGAAGTTTTACATAAAAGAACAATTGATGTTGGGTATTCCGGAAAAAGTAGGAGTTTAACATGGGCACGGCTGATGATGAAATCGATGAAAGACTTGAGATTTTGAAGGAGTTTATCGTTGTTAGAATAACAATTACTGCAGTAACAAGGGTCAATTATTCTGTGATTTAGGTTTTTTTTTTGAAGTTGGTTCATGTCTGTAGATGGAATATGAATGTAGGATGTATGATTTGTTGGAATAACAAGTAAACATACAATAAGAACAAAAGTTGGAGTACAGGACCTTTGGATCCATGCATTTACAAAAACCTTTGCCAGGATAAGGATATCAAAATAATAGTGAACTTTTTTGACAGCTGGGTCTAGTAGACAAAGAAAAAAAGCCCTACAATTCTGGTTTGAGTTTTAAGAGCGAGGAAAAAAGAACAGAAGTATGAACTGCAACTGGATTTTTGGTTGCTTGGATTTATCTTCTGCTGCTTCTTTCTTCATTTTCTTTGATATAATTTGCCACAATATATTCCTCATGTTTATCTGGGTTTGATATGTGACCAATGTATGCACAGATGGCTTCAATTTTTTTTCTTTTAATGAATATTGGAATGAAACTATTTCTTCTATCTAATAACCAAATGGAAAGTACTCAAATTCAAACTCACATGCCCCACATTGTATGACCAAAATGAGTAAATACCATCACGTGAGCTTTCAACTTAATCTGAAAATCATATTAAAAACTATTACAAACGGAGAGAGAATAAACCAAGTTCCTCTAGTTCTCTGAATATAATGAAACCAAAATCTTAATGAAAACTTAATAGTAACTATCATATAATCATCAAATCATGACTAAAGCCAAACACCGTGCTGTGGCCCCCTTTGACATTGATTGAAATGTTTTGGTGAAAATTCAGAATTGTTCCTTCGCGATAGACCTATAGAAATTTTTGCAGCATCTGAAACGCCTGTTTATCGAGAACCTGTTTTCCTGATGACCTCTATCAACTCTTCTAGACATTTGGAAAAAAACTGATAACTGTAAGAAGATTTGAATTTGACCCGCTTTTTTTGCTGAGATCCATTCACTAAGGCTTTACGAAGCTACGTTTGTAGCTTAGCCATTGTATTTTTCTCCTGTTATAGAGAGAAACAGCTGCAATCTTATTGTTGGTATTTGAATACCTCGGGAGAGACTGGGTAGGAGCAATTAACTCACATTGGTAGCTTGCTGCAGTAGTTCATTTAGGAAGTTCGTGTATGGGTTACTTTTTTAGCACCTCTCACTTAGTAGTTGTTTATCTTTTCATTCTTTTTTTTTTTTTTTTTATGTATTAAATGACCTCAAGTGAATTTGGTTTTATTTTGGGAGGGGCAGGAGACTTCATTTTTAGAAGATTGGTGAGTGTGTGAGAAGCCCCTTCGTGTGCTGTACCTTCTTTTGTATCATCTTTTGAGTAAGGGTTGTATTATGTAGTTTTCATTTCTGTCTGACCCCTCTTCCTCTTTATTGTTAGGTTTTAGTCTCCATCTTTCCAATAGAGATACTATTTTATGTGTTAGGTCTCCTTTCTGTTATCCTTGATCTGCATGTGCTCCGAGAGGGAAGGGATTTTAGGGTTTGTTGTTGTTCCCGCAGTTGTGCATTCTGTATAATTGTAAGGATGAGGATCTTATTCCTTGACGTGGGGTTGTCAGTTTGTTTAAACCCTTTGGGCTAGGTGGTTGGTCCTCCTTCGGTTTAAGTTTGGCATGGAATGATGACTGTTTTGCTTTGATCAAGGAGGTGCTCTTGGGGTTGCCTTTTCGTGAGAGTGGCACTATTTTGTGGCACACCAATTTCTTTTCTATCTTGTAGGGGATTGAGGATGAAAGAAATAATATAATTTTTAAAGATTTGGAGCAGTCTTGTGATGAGTTTGGTGGTAGTTAGGTTTAAAGTCACTTTGTGGGTGTTAGTCCCTATGCGTTTTTGTAGTTATGGTTTTGGATTGATTTTGTTTGATTGAAGTTCCTTTCTGTAGCTTTCGGGATGTTTGTTTGACTTGTTTTTGTTTCTCTTATATATTCTTTCATTTTTCTCAATGAAAGCTTGGTTTCTCACCCAAAAAAAAAAAAATATTGGTTTTGAATTATTCATTTTATTGTCACCCTAGAAGACGATACAATTCAGAGTTTGGGGTAGAACTCAAGGTGGCTTGTCTGTCTTACCTTTTTGTTTTTATTTGTTATTTTTACTACCAGGGCTGGTGAACTAACTGCTGCCGAGTTGGACAATCTCATGGTGATTGTTGCCAATCCACGACAATTTAAAGTTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGATGGGAAATATTCTCAAGTGGTTTCTAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATCAGGTAACTTCCTCTTTTTGGTGTCATATCAACACGCATAGTTTTTTGGTTAACTGCTCTTTTTAAGTGTTTGTCTTCTTAGGTATTAATCTTGTTTGTTTGACATTATAACTATTAAATCAGCTTTTGAAGAAAAAAAGAACAGCAGAAAAAATCTAAATTGTGCTGTTTTCATGTATTTCCTATAAAGTTTATTGTTGGTAATCGATATGTAATGATTAATTATCTTTTACGTTAGTTTTGATCTGTATTCTGCTGTATCTTTTGAATTAATATATTATAGATAAATGAGAGCAGAACATATCTTTCAAAATCATTTTCAGAAATAAAAAACAATAAAAAGAAAAGCAGTTATAAAGGGTCACTCAAACATCCCCCATGTCTGTTGGTGCCATATTCAACATGCATGCTATTTTAGCTGTGATGTACTTAAAAGGTCTGTAAAACCTAATGTTTTCACTGATTAGACACTGCCTTAACCATTTTGTGCCACTAATTTGTGAATCCAGAAGGGGCATATATGTTGGAAATGAAACCTATGATCCGTCTCTTTGTTGAATCTGATATATTCCTGAAGTGTTTCTATTATTAATGGCTGATGTATTTGGGATAATTCCAGTCCACTAATCTTCGATACATCGAATGCAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGAGTTCGTGGTCAGCACACTAAAACCACTGGTCGCCGAGGAAAAACTGTTGGTGTCTCCAAGAAACGTTGATATTTTTTTTCCATGTTTTCAGGAGTTTAGTATGTGGGTGGGCAAATCAGTATCTTTGGCCTGTTAGTTGAACATTTGAGCTGGTCCTCCTTTTTGGAAGTTTTGGTTGGGATGGTATTTTTGTTTAATTTACCCCTCCCCCTTTTTTTTTACTGTGATTTTACGCTAGAAAAGGAAGGTTACAGTGGCACATGCAAAGCTTATTGATGTTTGAAAGATTTTATTTATAGGATTCTTGTTTGGTCCAATTAGGTTTTGCTTGAAATCAGGTGCAGTTTAGTTGAGTTGAGAAATCATCCATCAATTTGTCGAATGTATATTGCGAATATTTTTGGAAATTTTTATTTGGTATTCAGAAAAATGTTATCTCGTTGATTAAAATGTGTTTCTATGTTCCTTTTCATTTATTTTGTTGTCTGTTTTATGTGATTTTAC GATACCATATAAAATCCTGCCCCACTCATCGGCCTGCGATCTCTTCTCGTTTTTTCCTGCCTCTGCTGCCGCCGGGAATTCTTTGAACTCCTTGCTTCTATCTACGTTCGCCATGTCGCTGGTAGCAAATGAGGATTTTCAGCACATTCTTCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTTTGGCTAACATCGTCTGCAAGAAGGCTGATGTCGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCCGAGTTGGACAATCTCATGGTGATTGTTGCCAATCCACGACAATTTAAAGTTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGATGGGAAATATTCTCAAGTGGTTTCTAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATCAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGAGTTCGTGGTCAGCACACTAAAACCACTGGTCGCCGAGGAAAAACTGTTGGTGTCTCCAAGAAACGTTGATATTTTTTTTCCATGTTTTCAGGAGTTTAGTATGTGGGTGGGCAAATCAGTATCTTTGGCCTGTTAGTTGAACATTTGAGCTGGTCCTCCTTTTTGGAAGTTTTGGTTGGGATGGTATTTTTGTTTAATTTACCCCTCCCCCTTTTTTTTTACTGTGATTTTACGCTAGAAAAGGAAGGTTACAGTGGCACATGCAAAGCTTATTGATGTTTGAAAGATTTTATTTATAGGATTCTTGTTTGGTCCAATTAGGTTTTGCTTGAAATCAGGTGCAGTTTAGTTGAGTTGAGAAATCATCCATCAATTTGTCGAATGTATATTGCGAATATTTTTGGAAATTTTTATTTGGTATTCAGAAAAATGTTATCTCGTTGATTAAAATGTGTTTCTATGTTCCTTTTCATTTATTTTGTTGTCTGTTTTATGTGATTTTAC ATGTCGCTGGTAGCAAATGAGGATTTTCAGCACATTCTTCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTTTGGCTAACATCGTCTGCAAGAAGGCTGATGTCGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCCGAGTTGGACAATCTCATGGTGATTGTTGCCAATCCACGACAATTTAAAGTTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGATGGGAAATATTCTCAAGTGGTTTCTAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATCAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGAGTTCGTGGTCAGCACACTAAAACCACTGGTCGCCGAGGAAAAACTGTTGGTGTCTCCAAGAAACGTTGA MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
BLAST of Carg27777 vs. NCBI nr
Match: XP_022926292.1 (40S ribosomal protein S18 [Cucurbita moschata] >XP_022981641.1 40S ribosomal protein S18 [Cucurbita maxima] >XP_023523328.1 40S ribosomal protein S18 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 303.1 bits (775), Expect = 5.2e-79 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
BLAST of Carg27777 vs. NCBI nr
Match: XP_022956233.1 (40S ribosomal protein S18-like [Cucurbita moschata]) HSP 1 Score: 301.2 bits (770), Expect = 2.0e-78 Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0
BLAST of Carg27777 vs. NCBI nr
Match: XP_022935851.1 (40S ribosomal protein S18-like [Cucurbita moschata] >XP_022939915.1 40S ribosomal protein S18-like [Cucurbita moschata] >XP_022976325.1 40S ribosomal protein S18-like [Cucurbita maxima] >XP_022990478.1 40S ribosomal protein S18-like [Cucurbita maxima] >XP_022993309.1 40S ribosomal protein S18-like [Cucurbita maxima] >XP_023535479.1 40S ribosomal protein S18-like [Cucurbita pepo subsp. pepo] >XP_023536458.1 40S ribosomal protein S18-like [Cucurbita pepo subsp. pepo] >XP_023551674.1 40S ribosomal protein S18-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 301.2 bits (770), Expect = 2.0e-78 Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0
BLAST of Carg27777 vs. NCBI nr
Match: XP_002524340.1 (40S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal protein S18 [Manihot esculenta] >XP_021689482.1 40S ribosomal protein S18 [Hevea brasiliensis] >EEF38080.1 40S ribosomal protein S18, putative [Ricinus communis] >OAY58510.1 hypothetical protein MANES_02G183300 [Manihot esculenta]) HSP 1 Score: 301.2 bits (770), Expect = 2.0e-78 Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0
BLAST of Carg27777 vs. NCBI nr
Match: XP_004139687.1 (PREDICTED: 40S ribosomal protein S18 [Cucumis sativus] >XP_008456747.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_008461916.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_004140957.2 PREDICTED: 40S ribosomal protein S18 [Cucumis sativus] >KGN44457.1 hypothetical protein Csa_7G293750 [Cucumis sativus] >KGN46116.1 hypothetical protein Csa_6G055370 [Cucumis sativus]) HSP 1 Score: 300.8 bits (769), Expect = 2.6e-78 Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0
BLAST of Carg27777 vs. TAIR10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family) HSP 1 Score: 297.4 bits (760), Expect = 5.2e-81 Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0
BLAST of Carg27777 vs. TAIR10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family) HSP 1 Score: 297.4 bits (760), Expect = 5.2e-81 Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0
BLAST of Carg27777 vs. TAIR10
Match: AT4G09800.1 (S18 ribosomal protein) HSP 1 Score: 297.4 bits (760), Expect = 5.2e-81 Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0
BLAST of Carg27777 vs. Swiss-Prot
Match: sp|P34788|RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 9.3e-80 Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0
BLAST of Carg27777 vs. Swiss-Prot
Match: sp|Q8ISP0|RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 1.7e-65 Identity = 118/152 (77.63%), Postives = 140/152 (92.11%), Query Frame = 0
BLAST of Carg27777 vs. Swiss-Prot
Match: sp|Q8IT98|RS18_ARGIR (40S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 1.9e-64 Identity = 115/152 (75.66%), Postives = 140/152 (92.11%), Query Frame = 0
BLAST of Carg27777 vs. Swiss-Prot
Match: sp|Q8JGS9|RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1) HSP 1 Score: 240.7 bits (613), Expect = 1.0e-62 Identity = 113/152 (74.34%), Postives = 137/152 (90.13%), Query Frame = 0
BLAST of Carg27777 vs. Swiss-Prot
Match: sp|Q90YQ5|RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 3.9e-62 Identity = 112/152 (73.68%), Postives = 137/152 (90.13%), Query Frame = 0
BLAST of Carg27777 vs. TrEMBL
Match: tr|B9SEC1|B9SEC1_RICCO (40S ribosomal protein S18, putative OS=Ricinus communis OX=3988 GN=RCOM_0961900 PE=3 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 1.3e-78 Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0
BLAST of Carg27777 vs. TrEMBL
Match: tr|A0A2C9WFF5|A0A2C9WFF5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G183300 PE=3 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 1.3e-78 Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0
BLAST of Carg27777 vs. TrEMBL
Match: tr|A0A0A0K7Z7|A0A0A0K7Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G055370 PE=3 SV=1) HSP 1 Score: 300.8 bits (769), Expect = 1.7e-78 Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0
BLAST of Carg27777 vs. TrEMBL
Match: tr|A0A1S3CH47|A0A1S3CH47_CUCME (40S ribosomal protein S18 OS=Cucumis melo OX=3656 GN=LOC103500403 PE=3 SV=1) HSP 1 Score: 300.8 bits (769), Expect = 1.7e-78 Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0
BLAST of Carg27777 vs. TrEMBL
Match: tr|V4T8G2|V4T8G2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002764mg PE=3 SV=1) HSP 1 Score: 300.8 bits (769), Expect = 1.7e-78 Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |