Carg27777 (gene) Silver-seed gourd

NameCarg27777
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRibosomal protein S13
LocationCucurbita_argyrosperma_scaffold_363 : 169012 .. 173234 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATACCATATAAAATCCTGCCCCACTCATCGGCCTGCGATCTCTTCTCGTTTTTTCCTGCCTCTGCTGCCGCCGGGAATTCTTTGAACTCCTTGCTTCTATCTACGTTCGCCATGGTAACTACAGTTTCTTGTTTGCTCTGTTTCCACTTGTTCTCTCCTATTGCCGGTTCTTGAATGCCCTAAATTATTCGTTAGGTTTTTACAATGGACTGTGTTGATTTGATTTTGTCTCCTTCTTTCTGTATCTAGTCGCTGGTAGCAAATGAGGATTTTCAGCACATTCTTCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTTTGGCTAACATCGTCTGCAAGAAGGCTGATGTCGACATGAACAAGAGGTATTCTTTTCCCTACTTTTCGCTGTTTTTTTTTTTTTTTTTCATTCATTGCGGTTTATCGTTTATCTAGTTTGGGAGAAAAATTCGAGAATTAGGAGTATTACAAGGGTTTTGTCCGTTGTGTTTAATTTTGCCTCTTAGATCGATGCTACGCATTGAGGTTTCCGTTCCTAATTATTTATCAAGAAGTTTATGCTGAAGTTTTACATAAAAGAACAATTGATGTTGGGTATTCCGGAAAAAGTAGGAGTTTAACATGGGCACGGCTGATGATGAAATCGATGAAAGACTTGAGATTTTGAAGGAGTTTATCGTTGTTAGAATAACAATTACTGCAGTAACAAGGGTCAATTATTCTGTGATTTAGGTTTTTTTTTTGAAGTTGGTTCATGTCTGTAGATGGAATATGAATGTAGGATGTATGATTTGTTGGAATAACAAGTAAACATACAATAAGAACAAAAGTTGGAGTACAGGACCTTTGGATCCATGCATTTACAAAAACCTTTGCCAGGATAAGGATATCAAAATAATAGTGAACTTTTTTGACAGCTGGGTCTAGTAGACAAAGAAAAAAAGCCCTACAATTCTGGTTTGAGTTTTAAGAGCGAGGAAAAAAGAACAGAAGTATGAACTGCAACTGGATTTTTGGTTGCTTGGATTTATCTTCTGCTGCTTCTTTCTTCATTTTCTTTGATATAATTTGCCACAATATATTCCTCATGTTTATCTGGGTTTGATATGTGACCAATGTATGCACAGATGGCTTCAATTTTTTTTCTTTTAATGAATATTGGAATGAAACTATTTCTTCTATCTAATAACCAAATGGAAAGTACTCAAATTCAAACTCACATGCCCCACATTGTATGACCAAAATGAGTAAATACCATCACGTGAGCTTTCAACTTAATCTGAAAATCATATTAAAAACTATTACAAACGGAGAGAGAATAAACCAAGTTCCTCTAGTTCTCTGAATATAATGAAACCAAAATCTTAATGAAAACTTAATAGTAACTATCATATAATCATCAAATCATGACTAAAGCCAAACACCGTGCTGTGGCCCCCTTTGACATTGATTGAAATGTTTTGGTGAAAATTCAGAATTGTTCCTTCGCGATAGACCTATAGAAATTTTTGCAGCATCTGAAACGCCTGTTTATCGAGAACCTGTTTTCCTGATGACCTCTATCAACTCTTCTAGACATTTGGAAAAAAACTGATAACTGTAAGAAGATTTGAATTTGACCCGCTTTTTTTGCTGAGATCCATTCACTAAGGCTTTACGAAGCTACGTTTGTAGCTTAGCCATTGTATTTTTCTCCTGTTATAGAGAGAAACAGCTGCAATCTTATTGTTGGTATTTGAATACCTCGGGAGAGACTGGGTAGGAGCAATTAACTCACATTGGTAGCTTGCTGCAGTAGTTCATTTAGGAAGTTCGTGTATGGGTTACTTTTTTAGCACCTCTCACTTAGTAGTTGTTTATCTTTTCATTCTTTTTTTTTTTTTTTTTATGTATTAAATGACCTCAAGTGAATTTGGTTTTATTTTGGGAGGGGCAGGAGACTTCATTTTTAGAAGATTGGTGAGTGTGTGAGAAGCCCCTTCGTGTGCTGTACCTTCTTTTGTATCATCTTTTGAGTAAGGGTTGTATTATGTAGTTTTCATTTCTGTCTGACCCCTCTTCCTCTTTATTGTTAGGTTTTAGTCTCCATCTTTCCAATAGAGATACTATTTTATGTGTTAGGTCTCCTTTCTGTTATCCTTGATCTGCATGTGCTCCGAGAGGGAAGGGATTTTAGGGTTTGTTGTTGTTCCCGCAGTTGTGCATTCTGTATAATTGTAAGGATGAGGATCTTATTCCTTGACGTGGGGTTGTCAGTTTGTTTAAACCCTTTGGGCTAGGTGGTTGGTCCTCCTTCGGTTTAAGTTTGGCATGGAATGATGACTGTTTTGCTTTGATCAAGGAGGTGCTCTTGGGGTTGCCTTTTCGTGAGAGTGGCACTATTTTGTGGCACACCAATTTCTTTTCTATCTTGTAGGGGATTGAGGATGAAAGAAATAATATAATTTTTAAAGATTTGGAGCAGTCTTGTGATGAGTTTGGTGGTAGTTAGGTTTAAAGTCACTTTGTGGGTGTTAGTCCCTATGCGTTTTTGTAGTTATGGTTTTGGATTGATTTTGTTTGATTGAAGTTCCTTTCTGTAGCTTTCGGGATGTTTGTTTGACTTGTTTTTGTTTCTCTTATATATTCTTTCATTTTTCTCAATGAAAGCTTGGTTTCTCACCCAAAAAAAAAAAAATATTGGTTTTGAATTATTCATTTTATTGTCACCCTAGAAGACGATACAATTCAGAGTTTGGGGTAGAACTCAAGGTGGCTTGTCTGTCTTACCTTTTTGTTTTTATTTGTTATTTTTACTACCAGGGCTGGTGAACTAACTGCTGCCGAGTTGGACAATCTCATGGTGATTGTTGCCAATCCACGACAATTTAAAGTTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGATGGGAAATATTCTCAAGTGGTTTCTAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATCAGGTAACTTCCTCTTTTTGGTGTCATATCAACACGCATAGTTTTTTGGTTAACTGCTCTTTTTAAGTGTTTGTCTTCTTAGGTATTAATCTTGTTTGTTTGACATTATAACTATTAAATCAGCTTTTGAAGAAAAAAAGAACAGCAGAAAAAATCTAAATTGTGCTGTTTTCATGTATTTCCTATAAAGTTTATTGTTGGTAATCGATATGTAATGATTAATTATCTTTTACGTTAGTTTTGATCTGTATTCTGCTGTATCTTTTGAATTAATATATTATAGATAAATGAGAGCAGAACATATCTTTCAAAATCATTTTCAGAAATAAAAAACAATAAAAAGAAAAGCAGTTATAAAGGGTCACTCAAACATCCCCCATGTCTGTTGGTGCCATATTCAACATGCATGCTATTTTAGCTGTGATGTACTTAAAAGGTCTGTAAAACCTAATGTTTTCACTGATTAGACACTGCCTTAACCATTTTGTGCCACTAATTTGTGAATCCAGAAGGGGCATATATGTTGGAAATGAAACCTATGATCCGTCTCTTTGTTGAATCTGATATATTCCTGAAGTGTTTCTATTATTAATGGCTGATGTATTTGGGATAATTCCAGTCCACTAATCTTCGATACATCGAATGCAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGAGTTCGTGGTCAGCACACTAAAACCACTGGTCGCCGAGGAAAAACTGTTGGTGTCTCCAAGAAACGTTGATATTTTTTTTCCATGTTTTCAGGAGTTTAGTATGTGGGTGGGCAAATCAGTATCTTTGGCCTGTTAGTTGAACATTTGAGCTGGTCCTCCTTTTTGGAAGTTTTGGTTGGGATGGTATTTTTGTTTAATTTACCCCTCCCCCTTTTTTTTTACTGTGATTTTACGCTAGAAAAGGAAGGTTACAGTGGCACATGCAAAGCTTATTGATGTTTGAAAGATTTTATTTATAGGATTCTTGTTTGGTCCAATTAGGTTTTGCTTGAAATCAGGTGCAGTTTAGTTGAGTTGAGAAATCATCCATCAATTTGTCGAATGTATATTGCGAATATTTTTGGAAATTTTTATTTGGTATTCAGAAAAATGTTATCTCGTTGATTAAAATGTGTTTCTATGTTCCTTTTCATTTATTTTGTTGTCTGTTTTATGTGATTTTAC

mRNA sequence

GATACCATATAAAATCCTGCCCCACTCATCGGCCTGCGATCTCTTCTCGTTTTTTCCTGCCTCTGCTGCCGCCGGGAATTCTTTGAACTCCTTGCTTCTATCTACGTTCGCCATGTCGCTGGTAGCAAATGAGGATTTTCAGCACATTCTTCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTTTGGCTAACATCGTCTGCAAGAAGGCTGATGTCGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCCGAGTTGGACAATCTCATGGTGATTGTTGCCAATCCACGACAATTTAAAGTTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGATGGGAAATATTCTCAAGTGGTTTCTAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATCAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGAGTTCGTGGTCAGCACACTAAAACCACTGGTCGCCGAGGAAAAACTGTTGGTGTCTCCAAGAAACGTTGATATTTTTTTTCCATGTTTTCAGGAGTTTAGTATGTGGGTGGGCAAATCAGTATCTTTGGCCTGTTAGTTGAACATTTGAGCTGGTCCTCCTTTTTGGAAGTTTTGGTTGGGATGGTATTTTTGTTTAATTTACCCCTCCCCCTTTTTTTTTACTGTGATTTTACGCTAGAAAAGGAAGGTTACAGTGGCACATGCAAAGCTTATTGATGTTTGAAAGATTTTATTTATAGGATTCTTGTTTGGTCCAATTAGGTTTTGCTTGAAATCAGGTGCAGTTTAGTTGAGTTGAGAAATCATCCATCAATTTGTCGAATGTATATTGCGAATATTTTTGGAAATTTTTATTTGGTATTCAGAAAAATGTTATCTCGTTGATTAAAATGTGTTTCTATGTTCCTTTTCATTTATTTTGTTGTCTGTTTTATGTGATTTTAC

Coding sequence (CDS)

ATGTCGCTGGTAGCAAATGAGGATTTTCAGCACATTCTTCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTTTGGCTAACATCGTCTGCAAGAAGGCTGATGTCGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCCGAGTTGGACAATCTCATGGTGATTGTTGCCAATCCACGACAATTTAAAGTTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGATGGGAAATATTCTCAAGTGGTTTCTAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATCAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGAGTTCGTGGTCAGCACACTAAAACCACTGGTCGCCGAGGAAAAACTGTTGGTGTCTCCAAGAAACGTTGA

Protein sequence

MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
BLAST of Carg27777 vs. NCBI nr
Match: XP_022926292.1 (40S ribosomal protein S18 [Cucurbita moschata] >XP_022981641.1 40S ribosomal protein S18 [Cucurbita maxima] >XP_023523328.1 40S ribosomal protein S18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.1 bits (775), Expect = 5.2e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

BLAST of Carg27777 vs. NCBI nr
Match: XP_022956233.1 (40S ribosomal protein S18-like [Cucurbita moschata])

HSP 1 Score: 301.2 bits (770), Expect = 2.0e-78
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGELT
Sbjct: 27  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 86

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 87  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 146

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 147 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 178

BLAST of Carg27777 vs. NCBI nr
Match: XP_022935851.1 (40S ribosomal protein S18-like [Cucurbita moschata] >XP_022939915.1 40S ribosomal protein S18-like [Cucurbita moschata] >XP_022976325.1 40S ribosomal protein S18-like [Cucurbita maxima] >XP_022990478.1 40S ribosomal protein S18-like [Cucurbita maxima] >XP_022993309.1 40S ribosomal protein S18-like [Cucurbita maxima] >XP_023535479.1 40S ribosomal protein S18-like [Cucurbita pepo subsp. pepo] >XP_023536458.1 40S ribosomal protein S18-like [Cucurbita pepo subsp. pepo] >XP_023551674.1 40S ribosomal protein S18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.2 bits (770), Expect = 2.0e-78
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

BLAST of Carg27777 vs. NCBI nr
Match: XP_002524340.1 (40S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal protein S18 [Manihot esculenta] >XP_021689482.1 40S ribosomal protein S18 [Hevea brasiliensis] >EEF38080.1 40S ribosomal protein S18, putative [Ricinus communis] >OAY58510.1 hypothetical protein MANES_02G183300 [Manihot esculenta])

HSP 1 Score: 301.2 bits (770), Expect = 2.0e-78
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVIVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

BLAST of Carg27777 vs. NCBI nr
Match: XP_004139687.1 (PREDICTED: 40S ribosomal protein S18 [Cucumis sativus] >XP_008456747.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_008461916.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_004140957.2 PREDICTED: 40S ribosomal protein S18 [Cucumis sativus] >KGN44457.1 hypothetical protein Csa_7G293750 [Cucumis sativus] >KGN46116.1 hypothetical protein Csa_6G055370 [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 2.6e-78
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

BLAST of Carg27777 vs. TAIR10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 297.4 bits (760), Expect = 5.2e-81
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM IVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

BLAST of Carg27777 vs. TAIR10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 297.4 bits (760), Expect = 5.2e-81
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM IVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

BLAST of Carg27777 vs. TAIR10
Match: AT4G09800.1 (S18 ribosomal protein)

HSP 1 Score: 297.4 bits (760), Expect = 5.2e-81
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM IVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

BLAST of Carg27777 vs. Swiss-Prot
Match: sp|P34788|RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 9.3e-80
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM IVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

BLAST of Carg27777 vs. Swiss-Prot
Match: sp|Q8ISP0|RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-65
Identity = 118/152 (77.63%), Postives = 140/152 (92.11%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGEL+
Sbjct: 1   MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ L+ I+ NPRQ+K+PDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR H
Sbjct: 61  DEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

BLAST of Carg27777 vs. Swiss-Prot
Match: sp|Q8IT98|RS18_ARGIR (40S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.9e-64
Identity = 115/152 (75.66%), Postives = 140/152 (92.11%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGEL+
Sbjct: 1   MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ I++NPRQ+K+P+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR H
Sbjct: 61  EDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGV+KK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVAKKK 152

BLAST of Carg27777 vs. Swiss-Prot
Match: sp|Q8JGS9|RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.0e-62
Identity = 113/152 (74.34%), Postives = 137/152 (90.13%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ I+ NPRQ+K+PDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

BLAST of Carg27777 vs. Swiss-Prot
Match: sp|Q90YQ5|RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.9e-62
Identity = 112/152 (73.68%), Postives = 137/152 (90.13%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ I+ NPRQ+K+PDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

BLAST of Carg27777 vs. TrEMBL
Match: tr|B9SEC1|B9SEC1_RICCO (40S ribosomal protein S18, putative OS=Ricinus communis OX=3988 GN=RCOM_0961900 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.3e-78
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVIVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

BLAST of Carg27777 vs. TrEMBL
Match: tr|A0A2C9WFF5|A0A2C9WFF5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G183300 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.3e-78
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVIVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

BLAST of Carg27777 vs. TrEMBL
Match: tr|A0A0A0K7Z7|A0A0A0K7Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G055370 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.7e-78
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

BLAST of Carg27777 vs. TrEMBL
Match: tr|A0A1S3CH47|A0A1S3CH47_CUCME (40S ribosomal protein S18 OS=Cucumis melo OX=3656 GN=LOC103500403 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.7e-78
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

BLAST of Carg27777 vs. TrEMBL
Match: tr|V4T8G2|V4T8G2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002764mg PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.7e-78
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022926292.15.2e-79100.0040S ribosomal protein S18 [Cucurbita moschata] >XP_022981641.1 40S ribosomal pro... [more]
XP_022956233.12.0e-7898.0340S ribosomal protein S18-like [Cucurbita moschata][more]
XP_022935851.12.0e-7898.0340S ribosomal protein S18-like [Cucurbita moschata] >XP_022939915.1 40S ribosoma... [more]
XP_002524340.12.0e-7898.6840S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal prote... [more]
XP_004139687.12.6e-7898.03PREDICTED: 40S ribosomal protein S18 [Cucumis sativus] >XP_008456747.1 PREDICTED... [more]
Match NameE-valueIdentityDescription
AT1G22780.15.2e-8196.71Ribosomal protein S13/S18 family[more]
AT1G34030.15.2e-8196.71Ribosomal protein S13/S18 family[more]
AT4G09800.15.2e-8196.71S18 ribosomal protein[more]
Match NameE-valueIdentityDescription
sp|P34788|RS18_ARATH9.3e-8096.7140S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1[more]
sp|Q8ISP0|RS18_BRABE1.7e-6577.6340S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1[more]
sp|Q8IT98|RS18_ARGIR1.9e-6475.6640S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1[more]
sp|Q8JGS9|RS18_DANRE1.0e-6274.3440S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1[more]
sp|Q90YQ5|RS18_ICTPU3.9e-6273.6840S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|B9SEC1|B9SEC1_RICCO1.3e-7898.6840S ribosomal protein S18, putative OS=Ricinus communis OX=3988 GN=RCOM_0961900 ... [more]
tr|A0A2C9WFF5|A0A2C9WFF5_MANES1.3e-7898.68Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G183300 PE=3 SV=... [more]
tr|A0A0A0K7Z7|A0A0A0K7Z7_CUCSA1.7e-7898.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G055370 PE=3 SV=1[more]
tr|A0A1S3CH47|A0A1S3CH47_CUCME1.7e-7898.0340S ribosomal protein S18 OS=Cucumis melo OX=3656 GN=LOC103500403 PE=3 SV=1[more]
tr|V4T8G2|V4T8G2_9ROSI1.7e-7898.03Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002764mg PE=3 ... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR010979Ribosomal_S13-like_H2TH
IPR018269Ribosomal_S13_CS
IPR02743730s_Rbsml_prot_S13_C
IPR001892Ribosomal_S13
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27777-RACarg27777-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 14..142
e-value: 2.6E-57
score: 192.6
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 4..152
e-value: 3.3E-40
score: 135.0
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 15..145
score: 34.975
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 12..152
score: 22.786
NoneNo IPR availableGENE3DG3DSA:1.10.8.50coord: 1..80
e-value: 9.7E-37
score: 126.9
NoneNo IPR availablePANTHERPTHR10871:SF19SUBFAMILY NOT NAMEDcoord: 1..152
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 1..152
IPR02743730s ribosomal protein S13, C-terminalGENE3DG3DSA:4.10.910.10coord: 92..142
e-value: 1.1E-28
score: 100.9
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 121..134
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILYSSF46946S13-like H2TH domaincoord: 13..152

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None