Carg27771 (gene) Silver-seed gourd

NameCarg27771
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHydrophobic protein like
LocationCucurbita_argyrosperma_scaffold_382 : 126515 .. 127065 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCGCTACCCACTACCACTGCTTCTAACGCCTCCTCCATTCCCCTCTGTTTGAATCCGAAGAAATTTCATAGCAAAACAATGGCCGACCCGGCGACCGCCAACTGCATCGATATCCTTCTGGCTATTATCTCCTGCCGCCGTCTCGGAGTGTTTCTCAAATTTGGATGCCAGGTCTGTGTCGCTCTCATCTTTTCTTCTTATACTTGGTTAATCGATGTTGTTGATTTGATGAACATGTAATAAACCATATTTGGTGTTCCATAGGTTGAGTTTTGGATCTGTTTGGTGCTAACTTGTTCGAATATCTCCCCGGGACATCTTGCTGTTTATGCTATCACCAAGTGATTCCGAGATGTGCTTTCATCATCAAAACTGTGTGTGTTTAGTTGGTTTTGTGCTATGTGTTTGTGTGCTGTGCTTCGTTTCTAAATTCTTTTTTCTTGTGTTTTGTGGCTGTTGTTGTTGTTGGTTGTATTGATTGAATTGGTTGCTGTAAACAAAATCCATCCTACTTTTTCTTCAACTTAATTACAACTTTACTTATATTTT

mRNA sequence

CATCGCTACCCACTACCACTGCTTCTAACGCCTCCTCCATTCCCCTCTGTTTGAATCCGAAGAAATTTCATAGCAAAACAATGGCCGACCCGGCGACCGCCAACTGCATCGATATCCTTCTGGCTATTATCTCCTGCCGCCGTCTCGGAGTGTTTCTCAAATTTGGATGCCAGGTTGAGTTTTGGATCTGTTTGGTGCTAACTTGTTCGAATATCTCCCCGGGACATCTTGCTGTTTATGCTATCACCAAGTGATTCCGAGATGTGCTTTCATCATCAAAACTGTGTGTGTTTAGTTGGTTTTGTGCTATGTGTTTGTGTGCTGTGCTTCGTTTCTAAATTCTTTTTTCTTGTGTTTTGTGGCTGTTGTTGTTGTTGGTTGTATTGATTGAATTGGTTGCTGTAAACAAAATCCATCCTACTTTTTCTTCAACTTAATTACAACTTTACTTATATTTT

Coding sequence (CDS)

ATGGCCGACCCGGCGACCGCCAACTGCATCGATATCCTTCTGGCTATTATCTCCTGCCGCCGTCTCGGAGTGTTTCTCAAATTTGGATGCCAGGTTGAGTTTTGGATCTGTTTGGTGCTAACTTGTTCGAATATCTCCCCGGGACATCTTGCTGTTTATGCTATCACCAAGTGA

Protein sequence

MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHLAVYAITK
BLAST of Carg27771 vs. NCBI nr
Match: XP_022961459.1 (hydrophobic protein LTI6B-like [Cucurbita moschata] >XP_022968842.1 hydrophobic protein LTI6B-like [Cucurbita maxima] >XP_023539025.1 hydrophobic protein LTI6B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 44/58 (75.86%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 1  MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          MADP TANCIDILLAI+    LGVFLKFGCQVEFWICLVLT     PG + AVYAITK
Sbjct: 1  MADPGTANCIDILLAIL-LPPLGVFLKFGCQVEFWICLVLTLFGYLPGIIYAVYAITK 57

BLAST of Carg27771 vs. NCBI nr
Match: GAU11402.1 (hypothetical protein TSUD_343930 [Trifolium subterraneum] >PNX74370.1 hydrophobic protein LTI6A-like [Trifolium pratense])

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11
Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 1  MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          MAD  TANCIDILLAII    LGVFLKFGC VEFWICLVLT     PG + AVYAITK
Sbjct: 1  MADEGTANCIDILLAII-LPPLGVFLKFGCNVEFWICLVLTLFGYIPGIIYAVYAITK 57

BLAST of Carg27771 vs. NCBI nr
Match: XP_016673999.1 (PREDICTED: hydrophobic protein RCI2B-like [Gossypium hirsutum] >XP_017618304.1 PREDICTED: hydrophobic protein RCI2B [Gossypium arboreum] >KHG20782.1 Hydrophobic RCI2B -like protein [Gossypium arboreum])

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 1  MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          MAD +TA CIDILLAII    LGVFLKFGCQVEFWICLVLT     PG + A+YAITK
Sbjct: 1  MADDSTATCIDILLAII-LPPLGVFLKFGCQVEFWICLVLTLFGYIPGIIYAIYAITK 57

BLAST of Carg27771 vs. NCBI nr
Match: KCW44804.1 (hypothetical protein EUGRSUZ_L01633, partial [Eucalyptus grandis])

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11
Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 1   MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
           MAD  T NCIDILLAII    LGVFLKFGCQVEFWICLVLT     PG + AVYAITK
Sbjct: 61  MADEGTMNCIDILLAII-LPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 117

BLAST of Carg27771 vs. NCBI nr
Match: KCW82305.1 (hypothetical protein EUGRSUZ_C03713 [Eucalyptus grandis])

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11
Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 1   MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
           MAD  T NCIDILLAII    LGVFLKFGCQVEFWICLVLT     PG + AVYAITK
Sbjct: 86  MADEGTMNCIDILLAII-LPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 142

BLAST of Carg27771 vs. TAIR10
Match: AT3G05890.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 59.7 bits (143), Expect = 6.8e-10
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 5  ATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          +TA  ++I+LAII    LGVFLKFGC+VEFWICL+LT     PG L A+Y ITK
Sbjct: 2  STATFVEIILAII-LPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

BLAST of Carg27771 vs. TAIR10
Match: AT3G05880.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-09
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 5  ATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          +TA  +DI++AI+    LGVFL+FGC VEFWICLVLT     PG + A+Y +TK
Sbjct: 2  STATFVDIIIAIL-LPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

BLAST of Carg27771 vs. TAIR10
Match: AT2G38905.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 45.8 bits (107), Expect = 1.0e-05
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 10 IDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHLAVYAI 56
          ++I+LAI+    +GVFL++GC VEFWICL+LT     PG   +YAI
Sbjct: 7  LEIILAIL-LPPVGVFLRYGCGVEFWICLLLTILGYIPG--IIYAI 49

BLAST of Carg27771 vs. TAIR10
Match: AT1G57550.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 42.0 bits (97), Expect = 1.5e-04
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 0

Query: 13 LLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          +L  I    +GVFL++G  +EFW+CL+LT     PG + A+Y +TK
Sbjct: 7  VLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52

BLAST of Carg27771 vs. TAIR10
Match: AT2G24040.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 40.0 bits (92), Expect = 5.6e-04
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 9  CIDILLAIISCRRLGVFLKFG-CQVEFWICLVLTCSNISPGHL-AVYAI 56
          C +I +AI+    +GV L+ G C VEF+ICL+LTC    PG + A+YAI
Sbjct: 8  CCEIFIAIL-LPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55

BLAST of Carg27771 vs. Swiss-Prot
Match: sp|A2Y075|LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 3.8e-10
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 6  TANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          TANCIDIL+AII    LGVFLKFGC  EFWICL+LT     PG + A+YAITK
Sbjct: 4  TANCIDILIAII-LPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

BLAST of Carg27771 vs. Swiss-Prot
Match: sp|Q0DKW8|LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6B PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.8e-10
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 6  TANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          TANCIDIL+AII    LGVFLKFGC  EFWICL+LT     PG + A+YAITK
Sbjct: 4  TANCIDILIAII-LPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

BLAST of Carg27771 vs. Swiss-Prot
Match: sp|Q8H5T6|LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6A PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-09
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 1  MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          MAD +TA CIDI+LAII    LGVF KFGC +EFWICL+LT     PG + AV+ ITK
Sbjct: 1  MAD-STATCIDIILAII-LPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56

BLAST of Carg27771 vs. Swiss-Prot
Match: sp|Q9ZNS6|RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-08
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 5  ATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          +TA  ++I+LAII    LGVFLKFGC+VEFWICL+LT     PG L A+Y ITK
Sbjct: 2  STATFVEIILAII-LPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

BLAST of Carg27771 vs. Swiss-Prot
Match: sp|Q9ZNQ7|RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.1e-08
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 5  ATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          +TA  +DI++AI+    LGVFL+FGC VEFWICLVLT     PG + A+Y +TK
Sbjct: 2  STATFVDIIIAIL-LPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

BLAST of Carg27771 vs. TrEMBL
Match: tr|A0A2K3L766|A0A2K3L766_TRIPR (Hydrophobic protein LTI6A-like OS=Trifolium pratense OX=57577 GN=L195_g030288 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 1  MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          MAD  TANCIDILLAII    LGVFLKFGC VEFWICLVLT     PG + AVYAITK
Sbjct: 1  MADEGTANCIDILLAII-LPPLGVFLKFGCNVEFWICLVLTLFGYIPGIIYAVYAITK 57

BLAST of Carg27771 vs. TrEMBL
Match: tr|A0A0B0P7E4|A0A0B0P7E4_GOSAR (Hydrophobic RCI2B-like protein OS=Gossypium arboreum OX=29729 GN=F383_27445 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-11
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 1  MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          MAD +TA CIDILLAII    LGVFLKFGCQVEFWICLVLT     PG + A+YAITK
Sbjct: 1  MADDSTATCIDILLAII-LPPLGVFLKFGCQVEFWICLVLTLFGYIPGIIYAIYAITK 57

BLAST of Carg27771 vs. TrEMBL
Match: tr|A0A1U8IDW9|A0A1U8IDW9_GOSHI (hydrophobic protein RCI2B-like OS=Gossypium hirsutum OX=3635 GN=LOC107893498 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-11
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 1  MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          MAD +TA CIDILLAII    LGVFLKFGCQVEFWICLVLT     PG + A+YAITK
Sbjct: 1  MADDSTATCIDILLAII-LPPLGVFLKFGCQVEFWICLVLTLFGYIPGIIYAIYAITK 57

BLAST of Carg27771 vs. TrEMBL
Match: tr|A0A0D2U4N9|A0A0D2U4N9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G210800 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-11
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 1  MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
          MAD +TA C+DILLAII    LGVFLKFGCQVEFWICLVLT     PG + A+YAITK
Sbjct: 1  MADDSTATCVDILLAII-LPPLGVFLKFGCQVEFWICLVLTLFGYIPGIIYAIYAITK 57

BLAST of Carg27771 vs. TrEMBL
Match: tr|A0A058ZTP7|A0A058ZTP7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L01633 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-11
Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 1   MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHL-AVYAITK 58
           MAD  T NCIDILLAII    LGVFLKFGCQVEFWICLVLT     PG + AVYAITK
Sbjct: 61  MADEGTMNCIDILLAII-LPPLGVFLKFGCQVEFWICLVLTLFGWIPGIIYAVYAITK 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022961459.11.6e-1275.86hydrophobic protein LTI6B-like [Cucurbita moschata] >XP_022968842.1 hydrophobic ... [more]
GAU11402.13.0e-1174.14hypothetical protein TSUD_343930 [Trifolium subterraneum] >PNX74370.1 hydrophobi... [more]
XP_016673999.13.9e-1172.41PREDICTED: hydrophobic protein RCI2B-like [Gossypium hirsutum] >XP_017618304.1 P... [more]
KCW44804.15.1e-1174.14hypothetical protein EUGRSUZ_L01633, partial [Eucalyptus grandis][more]
KCW82305.15.1e-1174.14hypothetical protein EUGRSUZ_C03713 [Eucalyptus grandis][more]
Match NameE-valueIdentityDescription
AT3G05890.16.8e-1061.11Low temperature and salt responsive protein family[more]
AT3G05880.13.4e-0955.56Low temperature and salt responsive protein family[more]
AT2G38905.11.0e-0552.17Low temperature and salt responsive protein family[more]
AT1G57550.11.5e-0443.48Low temperature and salt responsive protein family[more]
AT2G24040.15.6e-0448.98Low temperature and salt responsive protein family[more]
Match NameE-valueIdentityDescription
sp|A2Y075|LTI6B_ORYSI3.8e-1067.92Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 S... [more]
sp|Q0DKW8|LTI6B_ORYSJ3.8e-1067.92Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6B PE=2... [more]
sp|Q8H5T6|LTI6A_ORYSJ3.2e-0962.07Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6A PE=2... [more]
sp|Q9ZNS6|RCI2B_ARATH1.2e-0861.11Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1[more]
sp|Q9ZNQ7|RCI2A_ARATH6.1e-0855.56Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A2K3L766|A0A2K3L766_TRIPR2.0e-1174.14Hydrophobic protein LTI6A-like OS=Trifolium pratense OX=57577 GN=L195_g030288 PE... [more]
tr|A0A0B0P7E4|A0A0B0P7E4_GOSAR2.6e-1172.41Hydrophobic RCI2B-like protein OS=Gossypium arboreum OX=29729 GN=F383_27445 PE=4... [more]
tr|A0A1U8IDW9|A0A1U8IDW9_GOSHI2.6e-1172.41hydrophobic protein RCI2B-like OS=Gossypium hirsutum OX=3635 GN=LOC107893498 PE=... [more]
tr|A0A0D2U4N9|A0A0D2U4N9_GOSRA3.3e-1170.69Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G210800 PE=4 ... [more]
tr|A0A058ZTP7|A0A058ZTP7_EUCGR3.3e-1174.14Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L01... [more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR000612PMP3
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27771-RACarg27771-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000612Proteolipid membrane potential modulatorPFAMPF01679Pmp3coord: 9..55
e-value: 1.1E-6
score: 28.6
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 5..57
NoneNo IPR availablePANTHERPTHR21659:SF59HYDROPHOBIC PROTEIN RCI2Acoord: 5..57

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27771CmaCh10G011850Cucurbita maxima (Rimu)carcmaB0421
Carg27771CmoCh10G012630Cucurbita moschata (Rifu)carcmoB0416
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None