Carg27771 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATCGCTACCCACTACCACTGCTTCTAACGCCTCCTCCATTCCCCTCTGTTTGAATCCGAAGAAATTTCATAGCAAAACAATGGCCGACCCGGCGACCGCCAACTGCATCGATATCCTTCTGGCTATTATCTCCTGCCGCCGTCTCGGAGTGTTTCTCAAATTTGGATGCCAGGTCTGTGTCGCTCTCATCTTTTCTTCTTATACTTGGTTAATCGATGTTGTTGATTTGATGAACATGTAATAAACCATATTTGGTGTTCCATAGGTTGAGTTTTGGATCTGTTTGGTGCTAACTTGTTCGAATATCTCCCCGGGACATCTTGCTGTTTATGCTATCACCAAGTGATTCCGAGATGTGCTTTCATCATCAAAACTGTGTGTGTTTAGTTGGTTTTGTGCTATGTGTTTGTGTGCTGTGCTTCGTTTCTAAATTCTTTTTTCTTGTGTTTTGTGGCTGTTGTTGTTGTTGGTTGTATTGATTGAATTGGTTGCTGTAAACAAAATCCATCCTACTTTTTCTTCAACTTAATTACAACTTTACTTATATTTT CATCGCTACCCACTACCACTGCTTCTAACGCCTCCTCCATTCCCCTCTGTTTGAATCCGAAGAAATTTCATAGCAAAACAATGGCCGACCCGGCGACCGCCAACTGCATCGATATCCTTCTGGCTATTATCTCCTGCCGCCGTCTCGGAGTGTTTCTCAAATTTGGATGCCAGGTTGAGTTTTGGATCTGTTTGGTGCTAACTTGTTCGAATATCTCCCCGGGACATCTTGCTGTTTATGCTATCACCAAGTGATTCCGAGATGTGCTTTCATCATCAAAACTGTGTGTGTTTAGTTGGTTTTGTGCTATGTGTTTGTGTGCTGTGCTTCGTTTCTAAATTCTTTTTTCTTGTGTTTTGTGGCTGTTGTTGTTGTTGGTTGTATTGATTGAATTGGTTGCTGTAAACAAAATCCATCCTACTTTTTCTTCAACTTAATTACAACTTTACTTATATTTT ATGGCCGACCCGGCGACCGCCAACTGCATCGATATCCTTCTGGCTATTATCTCCTGCCGCCGTCTCGGAGTGTTTCTCAAATTTGGATGCCAGGTTGAGTTTTGGATCTGTTTGGTGCTAACTTGTTCGAATATCTCCCCGGGACATCTTGCTGTTTATGCTATCACCAAGTGA MADPATANCIDILLAIISCRRLGVFLKFGCQVEFWICLVLTCSNISPGHLAVYAITK
BLAST of Carg27771 vs. NCBI nr
Match: XP_022961459.1 (hydrophobic protein LTI6B-like [Cucurbita moschata] >XP_022968842.1 hydrophobic protein LTI6B-like [Cucurbita maxima] >XP_023539025.1 hydrophobic protein LTI6B-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12 Identity = 44/58 (75.86%), Postives = 46/58 (79.31%), Query Frame = 0
BLAST of Carg27771 vs. NCBI nr
Match: GAU11402.1 (hypothetical protein TSUD_343930 [Trifolium subterraneum] >PNX74370.1 hydrophobic protein LTI6A-like [Trifolium pratense]) HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11 Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 0
BLAST of Carg27771 vs. NCBI nr
Match: XP_016673999.1 (PREDICTED: hydrophobic protein RCI2B-like [Gossypium hirsutum] >XP_017618304.1 PREDICTED: hydrophobic protein RCI2B [Gossypium arboreum] >KHG20782.1 Hydrophobic RCI2B -like protein [Gossypium arboreum]) HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11 Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 0
BLAST of Carg27771 vs. NCBI nr
Match: KCW44804.1 (hypothetical protein EUGRSUZ_L01633, partial [Eucalyptus grandis]) HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11 Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 0
BLAST of Carg27771 vs. NCBI nr
Match: KCW82305.1 (hypothetical protein EUGRSUZ_C03713 [Eucalyptus grandis]) HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11 Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 0
BLAST of Carg27771 vs. TAIR10
Match: AT3G05890.1 (Low temperature and salt responsive protein family) HSP 1 Score: 59.7 bits (143), Expect = 6.8e-10 Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0
BLAST of Carg27771 vs. TAIR10
Match: AT3G05880.1 (Low temperature and salt responsive protein family) HSP 1 Score: 57.4 bits (137), Expect = 3.4e-09 Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0
BLAST of Carg27771 vs. TAIR10
Match: AT2G38905.1 (Low temperature and salt responsive protein family) HSP 1 Score: 45.8 bits (107), Expect = 1.0e-05 Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0
BLAST of Carg27771 vs. TAIR10
Match: AT1G57550.1 (Low temperature and salt responsive protein family) HSP 1 Score: 42.0 bits (97), Expect = 1.5e-04 Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 0
BLAST of Carg27771 vs. TAIR10
Match: AT2G24040.1 (Low temperature and salt responsive protein family) HSP 1 Score: 40.0 bits (92), Expect = 5.6e-04 Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0
BLAST of Carg27771 vs. Swiss-Prot
Match: sp|A2Y075|LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 SV=2) HSP 1 Score: 64.7 bits (156), Expect = 3.8e-10 Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0
BLAST of Carg27771 vs. Swiss-Prot
Match: sp|Q0DKW8|LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6B PE=2 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 3.8e-10 Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0
BLAST of Carg27771 vs. Swiss-Prot
Match: sp|Q8H5T6|LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6A PE=2 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 3.2e-09 Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0
BLAST of Carg27771 vs. Swiss-Prot
Match: sp|Q9ZNS6|RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 1.2e-08 Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0
BLAST of Carg27771 vs. Swiss-Prot
Match: sp|Q9ZNQ7|RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 6.1e-08 Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0
BLAST of Carg27771 vs. TrEMBL
Match: tr|A0A2K3L766|A0A2K3L766_TRIPR (Hydrophobic protein LTI6A-like OS=Trifolium pratense OX=57577 GN=L195_g030288 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11 Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 0
BLAST of Carg27771 vs. TrEMBL
Match: tr|A0A0B0P7E4|A0A0B0P7E4_GOSAR (Hydrophobic RCI2B-like protein OS=Gossypium arboreum OX=29729 GN=F383_27445 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 2.6e-11 Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 0
BLAST of Carg27771 vs. TrEMBL
Match: tr|A0A1U8IDW9|A0A1U8IDW9_GOSHI (hydrophobic protein RCI2B-like OS=Gossypium hirsutum OX=3635 GN=LOC107893498 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 2.6e-11 Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 0
BLAST of Carg27771 vs. TrEMBL
Match: tr|A0A0D2U4N9|A0A0D2U4N9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G210800 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.3e-11 Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0
BLAST of Carg27771 vs. TrEMBL
Match: tr|A0A058ZTP7|A0A058ZTP7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L01633 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.3e-11 Identity = 43/58 (74.14%), Postives = 44/58 (75.86%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |