Carg27712 (gene) Silver-seed gourd

Overview
NameCarg27712
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_529 : 49029 .. 49238 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAGGGACCCAATTTCGACGAAGCTTCAAACAGGCAAACTTGGTTTCTCGAGCGAGGAGGTGATCGAGTCGGAACGGACGCTTTTCAGTCGGAACCTATGTGCGATAGCACCGGTGGTTTTCTCGAGCGGTAAAGATGTCAACTATATGATCTCGAAGGGCAGAGTATTTGGATTATGGCGGCTGGAATCGCCGTCAATGCCCTAG

mRNA sequence

ATGTACAGGGACCCAATTTCGACGAAGCTTCAAACAGGCAAACTTGGTTTCTCGAGCGAGGAGGTGATCGAGTCGGAACGGACGCTTTTCAGTCGGAACCTATGTGCGATAGCACCGGTGGTTTTCTCGAGCGGTAAAGATGTCAACTATATGATCTCGAAGGGCAGAGTATTTGGATTATGGCGGCTGGAATCGCCGTCAATGCCCTAG

Coding sequence (CDS)

ATGTACAGGGACCCAATTTCGACGAAGCTTCAAACAGGCAAACTTGGTTTCTCGAGCGAGGAGGTGATCGAGTCGGAACGGACGCTTTTCAGTCGGAACCTATGTGCGATAGCACCGGTGGTTTTCTCGAGCGGTAAAGATGTCAACTATATGATCTCGAAGGGCAGAGTATTTGGATTATGGCGGCTGGAATCGCCGTCAATGCCCTAG

Protein sequence

MYRDPISTKLQTGKLGFSSEEVIESERTLFSRNLCAIAPVVFSSGKDVNYMISKGRVFGLWRLESPSMP
Homology
[Close]
BLAST of Carg27712 vs. NCBI nr
Match: XP_023548836.1 (acetylornithine aminotransferase, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.0 bits (149), Expect = 9.1e-07
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 5  PISTKLQTGKLGFSSEEVIESERTLFSRNLCAIAPVVFSSGKDVNYMISKGRVF 59
          P STKLQTGKLGFSSEEVIESER LF     A APVVFSSGK       +GR +
Sbjct: 37 PSSTKLQTGKLGFSSEEVIESERKLFV-GTYARAPVVFSSGKGCKLYDLEGREY 89

[Close]
BLAST of Carg27712 vs. NCBI nr
Match: XP_022953994.1 (acetylornithine aminotransferase, mitochondrial [Cucurbita moschata])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 5  PISTKLQTGKLGFSSEEVIESERTLFSRNLCAIAPVVFSSGKDVNYMISKGRVF 59
          P STKLQTGKLGFSSEEVIESER LF     A APVVFSSGK       +GR +
Sbjct: 37 PNSTKLQTGKLGFSSEEVIESERKLFV-GTYARAPVVFSSGKGCKLYDLEGREY 89

[Close]
BLAST of Carg27712 vs. NCBI nr
Match: XP_022991597.1 (acetylornithine aminotransferase, mitochondrial [Cucurbita maxima])

HSP 1 Score: 58.9 bits (141), Expect = 7.7e-06
Identity = 35/54 (64.81%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 5  PISTKLQTGKLGFSSEEVIESERTLFSRNLCAIAPVVFSSGKDVNYMISKGRVF 59
          P STKLQTGKLG SSEEVIESER LF     A APVVFSSGK       +GR +
Sbjct: 37 PSSTKLQTGKLGCSSEEVIESERKLFV-GTYARAPVVFSSGKGCKLYDLEGREY 89

The following BLAST results are available for this feature:
BLAST of Carg27712 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023548836.19.1e-0766.67acetylornithine aminotransferase, mitochondrial [Cucurbita pepo subsp. pepo][more]
XP_022953994.11.2e-0666.67acetylornithine aminotransferase, mitochondrial [Cucurbita moschata][more]
XP_022991597.17.7e-0664.81acetylornithine aminotransferase, mitochondrial [Cucurbita maxima][more]
BLAST of Carg27712 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg27712 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg27712 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27712-RACarg27712-RAmRNA