Carg27646 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27646
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_402 : 93212 .. 95113 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAGAGAAATGAGAGGACTGTCGCCGTCTGGAATCAGAAGATCGCTCTCAGCGCTGAGGAGTACGAGACGGCGAGATTTTCGGCATTCAATTCTGTGTTGTTCTTTCTGTACTGGCGATGATAATTACGACGGTAGGATCGGCGATGGAACGCAGACCTCGAAGGTTAAGGTTTTTGATCGTGATCTTAAGCGTAAACAGGTAAGCCTAATTGATCAGCATTTCCTTTTCGTTCTTTGTTCTATGTAAGTTCAGCAGAACAGGTTTGTAGTGGGGTATTTTGTGATATTTGGAGAACGTATGGTGAAATTGTGAAGATAATTTGTAATGTTCATCTGTTCAAAGGGAAATTCTGAGAGTATTATTGTTTTTCGTGATGGGGATTGACAATTCACTGTTTCATATGTTCATATTCTGCTTTCGTTCTGATTATTGTGTGTGCAAAGAGCTTTTAACAAGTTTGATTAAATGGCAAGTGGATATCTACTGCAAGGAACTTCTCATGTGAGATCCCACACCGGTTGGAGAGGTGAACGAAGCATTCCGTGTAAGGGTGTGGAAACATCTCCCGAGTTCTAAAAACCTTGAGGGGAAGCCTGAGAGGAAAAACCCAAAGAGGATAATATCTGCTTGCGGTGGGCTTAGGGGCATTAGAGTCAGTCACTGGGCAGTGTGCCAGCGAGGACGTTGGGCCCCCAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAATGAAGCATTCCTTATAAGGGTGTGGAATCCTCTCCCCTGGTAGATGCGTTTTAAAAATCTTGAGGGGATGCCTAAAAGGGAAAGCCCAAGGAGGACAATATCTGCTAGCGGTGGGATTAGGCTGTTACAAACGGTATCAAAGCCAGCCACTAGGCAGCATGCCAGCAAGGACGTTGGGCCCCAAGAGGGTAGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTCCTTGTAACGGTGTGGAAACATCTCCTTAGTAGACGTGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAATCCCTAGGAGGAAAATATCTGCTAGCAACGGGATTAGGCTGTTACAAACGGTATCAAAGCCAGTCACTGGGCAGCATGCCAGTAAGGATGCTGGCCCCCAAGAGGATGGATTGTGAGATCCCACATCGGTTGGAAAGGGGAACAAAGCATTCCTTGTAATGGTGTGGAAACGTCTCCTTAATAGACGCGTTTTAGAAACCTTGAGGGGAAGCCCGAAAGAGAAAGCCCAAAGAAGACAATATCTGCTAGCGGTGGGTTTGGGCTGTTATATTTTAGCTCCTCCTCGATAAGCTTTCTGATTTGCAGTGCCTTCAAATTTTTGGAGGGTTAAAATTGTTGTTTCTTGGTGACAGCGGGACCGAGCCATTACATTGGTGTGATTGCGTCTCCCGGAAGGATTCTCTTACTGGATTCACGTGTTGTTGCAGAAAAGCTTTATTGGATCGTTTGGAGGTATTAGATTGCGATATTGTGAAGTTATGTTCATTTTAGCTTGTGAATCCCATTCATTGATCTCTCAGTTATTGTTTTTCTAAGGAAATGTTGCACCTTTTTGAATGATATATCCGCTAAAGGTACGGTTGACTTACATGTTTCACGATTGGTACCTTTTGAAGGGATTGGCAAGAGGACATTTCCCTACGCATTGATGTTTGGGGGTTCATTGAAGGCTATCAGGCGATCGTTTCTGCCGTGGTAATAAACCTATTTCCATTTCTTCAATTATAGGAAAAAGGAAAATGTGAATTCGAGAGAACGTAAGTAAGGGTCGTCCCTCATAAATTAGGCATCAAGGAGTTCAACGATCTTAAAGTAGAATAAATATTTTAGAATTAATGAATCAAACATTCTCC

mRNA sequence

TAATAGAGAAATGAGAGGACTGTCGCCGTCTGGAATCAGAAGATCGCTCTCAGCGCTGAGGAGTACGAGACGGCGAGATTTTCGGCATTCAATTCTGTGTTGTTCTTTCTGTACTGGCGATGATAATTACGACGGTAGGATCGGCGATGGAACGCAGACCTCGAAGGTTAAGGTTTTTGATCGTGATCTTAAGCGTAAACAGCAGAACAGGTTTGTAGTGGGGTATTTTGTGATATTTGGAGAACCGGGACCGAGCCATTACATTGGTGTGATTGCGTCTCCCGGAAGGATTCTCTTACTGGATTCACGTGTTGTTGCAGAAAAGCTTTATTGGATCGTTTGGAGGGATTGGCAAGAGGACATTTCCCTACGCATTGATGTTTGGGGGTTCATTGAAGGCTATCAGGCGATCGTTTCTGCCGTGGTAATAAACCTATTTCCATTTCTTCAATTATAGGAAAAAGGAAAATGTGAATTCGAGAGAACGTAAGTAAGGGTCGTCCCTCATAAATTAGGCATCAAGGAGTTCAACGATCTTAAAGTAGAATAAATATTTTAGAATTAATGAATCAAACATTCTCC

Coding sequence (CDS)

ATGAGAGGACTGTCGCCGTCTGGAATCAGAAGATCGCTCTCAGCGCTGAGGAGTACGAGACGGCGAGATTTTCGGCATTCAATTCTGTGTTGTTCTTTCTGTACTGGCGATGATAATTACGACGGTAGGATCGGCGATGGAACGCAGACCTCGAAGGTTAAGGTTTTTGATCGTGATCTTAAGCGTAAACAGCAGAACAGGTTTGTAGTGGGGTATTTTGTGATATTTGGAGAACCGGGACCGAGCCATTACATTGGTGTGATTGCGTCTCCCGGAAGGATTCTCTTACTGGATTCACGTGTTGTTGCAGAAAAGCTTTATTGGATCGTTTGGAGGGATTGGCAAGAGGACATTTCCCTACGCATTGATGTTTGGGGGTTCATTGAAGGCTATCAGGCGATCGTTTCTGCCGTGGTAATAAACCTATTTCCATTTCTTCAATTATAG

Protein sequence

MRGLSPSGIRRSLSALRSTRRRDFRHSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDLKRKQQNRFVVGYFVIFGEPGPSHYIGVIASPGRILLLDSRVVAEKLYWIVWRDWQEDISLRIDVWGFIEGYQAIVSAVVINLFPFLQL

Homology

[Close]

BLAST of Carg27646 vs. NCBI nr
Match: XP_022925466.1 (LOW QUALITY PROTEIN: putative methyltransferase At1g22800, mitochondrial [Cucurbita moschata])

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MRGLSPSGIRRSLSALRSTRRRDFRHSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL 60
           MRGLSPSGIRRSLSALRSTRRRDFRHSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL
Sbjct: 71  MRGLSPSGIRRSLSALRSTRRRDFRHSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL 130

Query: 61  KRKQQNR 68
           KRKQ++R
Sbjct: 131 KRKQRDR 137

[Close]

BLAST of Carg27646 vs. NCBI nr
Match: XP_023535327.1 (putative methyltransferase At1g22800, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 5.3e-28
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MRGLSPSGIRRSLSALRSTRRRDFRHSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL 60
          MRGLSPSGIRRSLSALRSTRRRDF+HSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL
Sbjct: 1  MRGLSPSGIRRSLSALRSTRRRDFQHSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL 60

Query: 61 KRKQQNRFVVG 72
          KRKQ  R V G
Sbjct: 61 KRKQVCRGVFG 71

[Close]

BLAST of Carg27646 vs. NCBI nr
Match: XP_022973985.1 (LOW QUALITY PROTEIN: putative methyltransferase At1g22800, mitochondrial [Cucurbita maxima])

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1   MRGLSPSGIRRSLSALRSTRRRDFRHSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL 60
           MRGLSPSGIRRSLSAL STRR+DF  SILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL
Sbjct: 71  MRGLSPSGIRRSLSAL-STRRQDFPDSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL 130

Query: 61  KRKQQNR 68
           KRKQ++R
Sbjct: 131 KRKQRDR 136

[Close]

BLAST of Carg27646 vs. NCBI nr
Match: XP_011656106.1 (PREDICTED: putative methyltransferase At1g22800 [Cucumis sativus] >KGN52686.1 hypothetical protein Csa_5G650510 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 4.8e-21
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MRGLSPSGIRRSLSALRSTRRRDFRHSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL 60
          MRGLSPS I RS S LRSTR RD  +SILCCSFCTGDDNYDGRIGDG Q+SKVKVFDRDL
Sbjct: 1  MRGLSPSTIIRSFSLLRSTRWRDSPNSILCCSFCTGDDNYDGRIGDGMQSSKVKVFDRDL 60

Query: 61 KRKQQNR 68
          KRKQ++R
Sbjct: 61 KRKQRDR 67

[Close]

BLAST of Carg27646 vs. NCBI nr
Match: XP_008459637.1 (PREDICTED: putative methyltransferase At1g22800 isoform X1 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 5.9e-19
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MRGLSPSGIRRSLSALRSTRRRDFRHSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL 60
          MRGLSPS I RS S LRS R RDF +SI CCSF TGDDNYDGRIGDG  +SKVKVFDRDL
Sbjct: 1  MRGLSPSTIIRSFSVLRSARWRDFPNSIPCCSFSTGDDNYDGRIGDGMHSSKVKVFDRDL 60

Query: 61 KRKQQNR 68
          KRKQ++R
Sbjct: 61 KRKQRDR 67

[Close]

BLAST of Carg27646 vs. TrEMBL
Match: tr|A0A0A0KXX9|A0A0A0KXX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650510 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.2e-21
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MRGLSPSGIRRSLSALRSTRRRDFRHSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL 60
          MRGLSPS I RS S LRSTR RD  +SILCCSFCTGDDNYDGRIGDG Q+SKVKVFDRDL
Sbjct: 1  MRGLSPSTIIRSFSLLRSTRWRDSPNSILCCSFCTGDDNYDGRIGDGMQSSKVKVFDRDL 60

Query: 61 KRKQQNR 68
          KRKQ++R
Sbjct: 61 KRKQRDR 67

[Close]

BLAST of Carg27646 vs. TrEMBL
Match: tr|A0A1S3CBW0|A0A1S3CBW0_CUCME (putative methyltransferase At1g22800 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498701 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.9e-19
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MRGLSPSGIRRSLSALRSTRRRDFRHSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL 60
          MRGLSPS I RS S LRS R RDF +SI CCSF TGDDNYDGRIGDG  +SKVKVFDRDL
Sbjct: 1  MRGLSPSTIIRSFSVLRSARWRDFPNSIPCCSFSTGDDNYDGRIGDGMHSSKVKVFDRDL 60

Query: 61 KRKQQNR 68
          KRKQ++R
Sbjct: 61 KRKQRDR 67

[Close]

BLAST of Carg27646 vs. TrEMBL
Match: tr|A0A1S3CB55|A0A1S3CB55_CUCME (putative methyltransferase At1g22800 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498701 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.9e-19
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MRGLSPSGIRRSLSALRSTRRRDFRHSILCCSFCTGDDNYDGRIGDGTQTSKVKVFDRDL 60
          MRGLSPS I RS S LRS R RDF +SI CCSF TGDDNYDGRIGDG  +SKVKVFDRDL
Sbjct: 1  MRGLSPSTIIRSFSVLRSARWRDFPNSIPCCSFSTGDDNYDGRIGDGMHSSKVKVFDRDL 60

Query: 61 KRKQQNR 68
          KRKQ++R
Sbjct: 61 KRKQRDR 67

The following BLAST results are available for this feature:

BLAST of Carg27646 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925466.1	1.4e-28	97.01	LOW QUALITY PROTEIN: putative methyltransferase At1g22800, mitochondrial [Cucurb...	[more]
XP_023535327.1	5.3e-28	92.96	putative methyltransferase At1g22800, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022973985.1	2.1e-24	91.04	LOW QUALITY PROTEIN: putative methyltransferase At1g22800, mitochondrial [Cucurb...	[more]
XP_011656106.1	4.8e-21	82.09	PREDICTED: putative methyltransferase At1g22800 [Cucumis sativus] >KGN52686.1 hy...	[more]
XP_008459637.1	5.9e-19	77.61	PREDICTED: putative methyltransferase At1g22800 isoform X1 [Cucumis melo]	[more]

BLAST of Carg27646 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg27646 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27646 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXX9\|A0A0A0KXX9_CUCSA	3.2e-21	82.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650510 PE=4 SV=1	[more]
tr\|A0A1S3CBW0\|A0A1S3CBW0_CUCME	3.9e-19	77.61	putative methyltransferase At1g22800 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CB55\|A0A1S3CB55_CUCME	3.9e-19	77.61	putative methyltransferase At1g22800 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27646-RA	Carg27646-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27646	Cla012495	Watermelon (97103) v1	carwmB0347
Carg27646	MELO3C022197	Melon (DHL92) v3.5.1	carmeB0361
Carg27646	ClCG08G000650	Watermelon (Charleston Gray)	carwcgB0348
Carg27646	CSPI05G31150	Wild cucumber (PI 183967)	carcpiB0392
Carg27646	CmaCh09G012460	Cucurbita maxima (Rimu)	carcmaB0500
Carg27646	CmoCh09G012980	Cucurbita moschata (Rifu)	carcmoB0483
Carg27646	Lsi08G000520	Bottle gourd (USVL1VR-Ls)	carlsiB323
Carg27646	Cp4.1LG06g10080	Cucurbita pepo (Zucchini)	carcpeB0496
Carg27646	CsGy5G030470	Cucumber (Gy14) v2	carcgybB0367
Carg27646	MELO3C022197.2	Melon (DHL92) v3.6.1	carmedB0366
Carg27646	CsaV3_5G040210	Cucumber (Chinese Long) v3	carcucB0391
Carg27646	Cla97C08G144990	Watermelon (97103) v2	carwmbB0372

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None