Carg27542 (gene) Silver-seed gourd

Overview
NameCarg27542
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionglycine-rich cell wall structural protein 1-like
LocationCucurbita_argyrosperma_scaffold_458 : 45373 .. 46293 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCTCTCCAAAATGGGTTTCTCTTGGTTTTCTTGTAATTTGCATTGTGCTCCATTTGAGTGCTCTTGCTCTAGCTGATAACAAGCTTGAAAAGAGTAGGTTTAGGGATGATGATTGTTGGGGCCGACGTTGCGGTGGCAGATATGGAGGTCGTGGACCGCGATATGGTAGGGGAGGTGGTTTTGGAGGCGGTAGAGGAGGTGGGTTTGGTGGTGGTAGAGGGGGTGGATCGGGTGGAGGGTTTGGAGGCGGCGGTGGAGTAGGTGGCGGTGTTGGAGGAGGAGGTGGAGTGGGAGGTGGTTCTGGACATGGTGGAGGGTTTGGAGCTGGAGGTGGCGTTGGTGGAGGTGCAGGAGGAGGTGGCGGTGGAGGAGGTGGTGGCGGCGGAAATGGTGGTGGGTCTGGCCATGGTGGAGGCTTTGGAGCTGGTGGAGGTATAGGTAGTGGCGCTGGCGGAGGTGGAGGCGGAGGTGGAGGTGGAGGTGGCGGAGGAAGTGGCAGTGGGTCGGGCCATGGTGGAGGCTTTGGAGCTGGTGGAGGTGTGGGTAGTGGGGCTGGCGGAGGCGGAGGCGGTGGTGGTGGTGGAGGAGGTGGCGGAGGAAGTGGTGGTGGGTCAGGCCATGGTGGAGGCTTTGGAGTTGGTGGAGGTGTAGGTAGTGGGGCTGGCGGAGGAGGAGGCGGAGGTGGAGGCGGAGGCGGTGGTGGTGGTGGTCTAGGCGGAGGTTCAGGTCATGGAGGTGGATTTGGAGCCGGCGGAGGAGCTGGATCCGGAGGAGGTTTAGGGCATGGCGGCAGTGGTGGTCACAGCGGAGGATTTGGAATAGGAATAGGGATTGGAATAGGAGTTGGTAGCGGATCAGGTCGCGGCGTCGGCGTTGGCTCCGGGTCCAGTGGAGGAGGTGGTGGTCGTCGTTAA

mRNA sequence

ATGGGTGGCTCTCCAAAATGGGTTTCTCTTGGTTTTCTTGTAATTTGCATTGTGCTCCATTTGAGTGCTCTTGCTCTAGCTGATAACAAGCTTGAAAAGAGTAGGTTTAGGGATGATGATTGTTGGGGCCGACGTTGCGGTGGCAGATATGGAGGTCGTGGACCGCGATATGGTAGGGGAGGTGGTTTTGGAGGCGGTAGAGGAGGTGGGTTTGGTGGTGGTAGAGGGGGTGGATCGGGTGGAGGGTTTGGAGGCGGCGGTGGAGTAGGTGGCGGTGTTGGAGGAGGAGGTGGAGTGGGAGGTGGTTCTGGACATGGTGGAGGGTTTGGAGCTGGAGGTGGCGTTGGTGGAGGTGCAGGAGGAGGTGGCGGTGGAGGAGGTGGTGGCGGCGGAAATGGTGGTGGGTCTGGCCATGGTGGAGGCTTTGGAGCTGGTGGAGGTATAGGTAGTGGCGCTGGCGGAGGTGGAGGCGGAGGTGGAGGTGGAGGTGGCGGAGGAAGTGGCAGTGGGTCGGGCCATGGTGGAGGCTTTGGAGCTGGTGGAGGTGTGGGTAGTGGGGCTGGCGGAGGCGGAGGCGGTGGTGGTGGTGGAGGAGGTGGCGGAGGAAGTGGTGGTGGGTCAGGCCATGGTGGAGGCTTTGGAGTTGGTGGAGGTGTAGGTAGTGGGGCTGGCGGAGGAGGAGGCGGAGGTGGAGGCGGAGGCGGTGGTGGTGGTGGTCTAGGCGGAGGTTCAGGTCATGGAGGTGGATTTGGAGCCGGCGGAGGAGCTGGATCCGGAGGAGGTTTAGGGCATGGCGGCAGTGGTGGTCACAGCGGAGGATTTGGAATAGGAATAGGGATTGGAATAGGAGTTGGTAGCGGATCAGGTCGCGGCGTCGGCGTTGGCTCCGGGTCCAGTGGAGGAGGTGGTGGTCGTCGTTAA

Coding sequence (CDS)

ATGGGTGGCTCTCCAAAATGGGTTTCTCTTGGTTTTCTTGTAATTTGCATTGTGCTCCATTTGAGTGCTCTTGCTCTAGCTGATAACAAGCTTGAAAAGAGTAGGTTTAGGGATGATGATTGTTGGGGCCGACGTTGCGGTGGCAGATATGGAGGTCGTGGACCGCGATATGGTAGGGGAGGTGGTTTTGGAGGCGGTAGAGGAGGTGGGTTTGGTGGTGGTAGAGGGGGTGGATCGGGTGGAGGGTTTGGAGGCGGCGGTGGAGTAGGTGGCGGTGTTGGAGGAGGAGGTGGAGTGGGAGGTGGTTCTGGACATGGTGGAGGGTTTGGAGCTGGAGGTGGCGTTGGTGGAGGTGCAGGAGGAGGTGGCGGTGGAGGAGGTGGTGGCGGCGGAAATGGTGGTGGGTCTGGCCATGGTGGAGGCTTTGGAGCTGGTGGAGGTATAGGTAGTGGCGCTGGCGGAGGTGGAGGCGGAGGTGGAGGTGGAGGTGGCGGAGGAAGTGGCAGTGGGTCGGGCCATGGTGGAGGCTTTGGAGCTGGTGGAGGTGTGGGTAGTGGGGCTGGCGGAGGCGGAGGCGGTGGTGGTGGTGGAGGAGGTGGCGGAGGAAGTGGTGGTGGGTCAGGCCATGGTGGAGGCTTTGGAGTTGGTGGAGGTGTAGGTAGTGGGGCTGGCGGAGGAGGAGGCGGAGGTGGAGGCGGAGGCGGTGGTGGTGGTGGTCTAGGCGGAGGTTCAGGTCATGGAGGTGGATTTGGAGCCGGCGGAGGAGCTGGATCCGGAGGAGGTTTAGGGCATGGCGGCAGTGGTGGTCACAGCGGAGGATTTGGAATAGGAATAGGGATTGGAATAGGAGTTGGTAGCGGATCAGGTCGCGGCGTCGGCGTTGGCTCCGGGTCCAGTGGAGGAGGTGGTGGTCGTCGTTAA

Protein sequence

MGGSPKWVSLGFLVICIVLHLSALALADNKLEKSRFRDDDCWGRRCGGRYGGRGPRYGRGGGFGGGRGGGFGGGRGGGSGGGFGGGGGVGGGVGGGGGVGGGSGHGGGFGAGGGVGGGAGGGGGGGGGGGGNGGGSGHGGGFGAGGGIGSGAGGGGGGGGGGGGGGSGSGSGHGGGFGAGGGVGSGAGGGGGGGGGGGGGGGSGGGSGHGGGFGVGGGVGSGAGGGGGGGGGGGGGGGGLGGGSGHGGGFGAGGGAGSGGGLGHGGSGGHSGGFGIGIGIGIGVGSGSGRGVGVGSGSSGGGGGRR
Homology
[Close]
BLAST of Carg27542 vs. NCBI nr
Match: XP_023530328.1 (glycine-rich cell wall structural protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.7 bits (252), Expect = 4.6e-18
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 1  MGGSPKWVSLGFLVICIVLHLSALALADNKLEKSRFRDDDCWGRRC 47
          MGGSPKWVSLGFLVICIVLHLSALALADNKLEKSRFRDDDCWGRRC
Sbjct: 1  MGGSPKWVSLGFLVICIVLHLSALALADNKLEKSRFRDDDCWGRRC 46

[Close]
BLAST of Carg27542 vs. NCBI nr
Match: XP_022989506.1 (glycine-rich cell wall structural protein 1-like [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 1  MGGSPKWVSLGFLVICIVLHLSALALADNKLEKSRFRDDDCWGRRC 47
          MGGSPKWVSLGFLVICIVLHLSALALAD KLEKSRFRDDDCWGRRC
Sbjct: 1  MGGSPKWVSLGFLVICIVLHLSALALADKKLEKSRFRDDDCWGRRC 46

[Close]
BLAST of Carg27542 vs. NCBI nr
Match: XP_023511646.1 (glycine-rich cell wall structural protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-14
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 1  MGGSPKWVSLGFLVICIVLHLSALALADNKLEKSRFRDDDCWGRRC 47
          MGGSPKWVSLG L +CIVLHLSA+AL D+KL KSRFRDDDCWGRRC
Sbjct: 1  MGGSPKWVSLGLLTLCIVLHLSAIALGDDKLGKSRFRDDDCWGRRC 46

[Close]
BLAST of Carg27542 vs. NCBI nr
Match: XP_015877725.1 (glycine-rich cell wall structural protein 1-like [Ziziphus jujuba])

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-09
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 1  MGGSPKWVSLGFLVICIVLHLSALALADNKLEKSRFRDDDC-WGRRC 47
          M  SPKWVSL  L++CI LHLSA+ L D+KL+++RFRD DC WGRRC
Sbjct: 1  MDASPKWVSLSLLILCIALHLSAITLGDDKLDETRFRDYDCPWGRRC 47

[Close]
BLAST of Carg27542 vs. NCBI nr
Match: XP_011659702.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus] >KGN43514.1 hypothetical protein Csa_7G043560 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-09
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1  MGGSPKWVSLGFLVICIVLHLSALALADNKLEKSRFR-DDDC-WGRRC 47
          MGGS KW SLG L +CIVLHLSA+ L D+KL K+ FR DDDC WGRRC
Sbjct: 1  MGGSQKWFSLGLLTLCIVLHLSAIVLGDDKLNKNGFRDDDDCRWGRRC 48

[Close]
BLAST of Carg27542 vs. TrEMBL
Match: tr|A0A1S4E0F3|A0A1S4E0F3_CUCME (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC107991344 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1  MGGSPKWVSLGFLVICIVLHLSALALADNKLEKSRFR-DDDC-WGRRC 47
          MGGS KW SLG L +CIVLHLSA+ L D+KL K+ FR DDDC WGRRC
Sbjct: 1  MGGSQKWFSLGLLTLCIVLHLSAIVLGDDKLNKNGFRDDDDCRWGRRC 48

[Close]
BLAST of Carg27542 vs. TrEMBL
Match: tr|A0A0A0K3J8|A0A0A0K3J8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G043560 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1  MGGSPKWVSLGFLVICIVLHLSALALADNKLEKSRFR-DDDC-WGRRC 47
          MGGS KW SLG L +CIVLHLSA+ L D+KL K+ FR DDDC WGRRC
Sbjct: 1  MGGSQKWFSLGLLTLCIVLHLSAIVLGDDKLNKNGFRDDDDCRWGRRC 48

[Close]
BLAST of Carg27542 vs. TrEMBL
Match: tr|A0A2I4GX66|A0A2I4GX66_9ROSI (glycine-rich cell wall structural protein 1-like OS=Juglans regia OX=51240 GN=LOC109011653 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-06
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 1  MGGSPKWVSLGFLVICIVLHLSALALADNKLEKSRFRDDDCWGRR 46
          M  S KW+SL  LV+CIVLHLSA+ L D+KL+K+R+RDD  +GRR
Sbjct: 1  MSDSSKWLSLSLLVLCIVLHLSAITLGDDKLDKTRYRDDCRFGRR 45

[Close]
BLAST of Carg27542 vs. TrEMBL
Match: tr|A0A2P6S259|A0A2P6S259_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0158961 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.7e-06
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 1  MGGSPKWVSLGFLVICIVLHLSAL-ALADNKLEKSRFRDDDC-WGRRC 47
          MG S KW+S   LV+CIV  LSA+ A  D+K++K+RFRDDDC WGRRC
Sbjct: 1  MGVSRKWLSSSLLVLCIVFQLSAMFAQGDDKVDKARFRDDDCGWGRRC 48

[Close]
BLAST of Carg27542 vs. TrEMBL
Match: tr|A0A2P5CMG0|A0A2P5CMG0_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_279950 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.8e-06
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 6  KWVSLGFLVICIVLHLSALALADNKLEKSRFR-DDDC-WGRRC 47
          KWVSL  L++CI LHLS+  L D+KL+K+ FR DDDC WGRRC
Sbjct: 6  KWVSLALLLLCIALHLSSFTLGDDKLDKTGFRDDDDCRWGRRC 48

The following BLAST results are available for this feature:
BLAST of Carg27542 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023530328.14.6e-18100.00glycine-rich cell wall structural protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022989506.12.3e-1797.83glycine-rich cell wall structural protein 1-like [Cucurbita maxima][more]
XP_023511646.11.4e-1484.78glycine-rich cell wall structural protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_015877725.15.1e-0965.96glycine-rich cell wall structural protein 1-like [Ziziphus jujuba][more]
XP_011659702.16.7e-0970.83PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus] >K... [more]
BLAST of Carg27542 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg27542 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg27542 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E0F3|A0A1S4E0F3_CUCME4.4e-0970.83glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A0A0K3J8|A0A0A0K3J8_CUCSA4.4e-0970.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G043560 PE=4 SV=1[more]
tr|A0A2I4GX66|A0A2I4GX66_9ROSI2.1e-0662.22glycine-rich cell wall structural protein 1-like OS=Juglans regia OX=51240 GN=LO... [more]
tr|A0A2P6S259|A0A2P6S259_ROSCH2.7e-0662.50Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0158961 PE=4... [more]
tr|A0A2P5CMG0|A0A2P5CMG0_9ROSA7.8e-0665.12Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_279950 PE=4 S... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27542-RACarg27542-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 155..173
score: 51.97
coord: 127..137
score: 51.14
coord: 38..49
score: 31.25
coord: 101..116
score: 41.41
NoneNo IPR availablePANTHERPTHR40903FAMILY NOT NAMEDcoord: 3..155

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27542CmaCh11G018180Cucurbita maxima (Rimu)carcmaB1313
Carg27542CmoCh11G018920Cucurbita moschata (Rifu)carcmoB1282
Carg27542Bhi05G001182Wax gourdcarwgoB1111
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg27542Bottle gourd (USVL1VR-Ls)carlsiB873