Carg27486 (gene) Silver-seed gourd

Overview
NameCarg27486
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_422 : 102886 .. 103228 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGCATTACACTTTATGTTAAGTCTTTTGCAATCTTTGTCCCTAACCCTAAATTACTTGGACTTACCCCAAAAGAGGTCATCTCGGATGATGTGGTGTATGCCACGTTTGAGCTTACATGCATTGACATAGAGAAGTTGAGGAGAAGAGTGGTAGCAACTTCTTCATCCACTCCTCGTCGGTTATCAAGTTTTATGTTGGCGTTTTCTCTTGTCTCGACGTGATCGTCAAAAGCGCAAGCGAATCGAACCGAAAAGTAAGATAGGGTTGATCTTTCTTGTGGATTGGCGGCTCGTATGGATGTGCTTAGGGGGCTCAATTATTTTGGTAATGGTGTAA

mRNA sequence

ATGGGTTGCATTACACTTTATGTTAAGTCTTTTGCAATCTTTGTCCCTAACCCTAAATTACTTGGACTTACCCCAAAAGAGGTCATCTCGGATGATGTGGTGTATGCCACGTTTGAGCTTACATGCATTGACATAGAGAAGTTGAGGAGAAGAGTGGTAGCAACTTCTTCATCCACTCCTCTTTTATGTTGGCGTTTTCTCTTGTCTCGACGTGATCGTCAAAAGCGCAAGCGAATCGAACCGAAAAGTAAGATAGGGTTGATCTTTCTTGTGGATTGGCGGCTCGTATGGATGTGCTTAGGGGGCTCAATTATTTTGGTAATGGTGTAA

Coding sequence (CDS)

ATGGGTTGCATTACACTTTATGTTAAGTCTTTTGCAATCTTTGTCCCTAACCCTAAATTACTTGGACTTACCCCAAAAGAGGTCATCTCGGATGATGTGGTGTATGCCACGTTTGAGCTTACATGCATTGACATAGAGAAGTTGAGGAGAAGAGTGGTAGCAACTTCTTCATCCACTCCTCTTTTATGTTGGCGTTTTCTCTTGTCTCGACGTGATCGTCAAAAGCGCAAGCGAATCGAACCGAAAAGTAAGATAGGGTTGATCTTTCTTGTGGATTGGCGGCTCGTATGGATGTGCTTAGGGGGCTCAATTATTTTGGTAATGGTGTAA

Protein sequence

MGCITLYVKSFAIFVPNPKLLGLTPKEVISDDVVYATFELTCIDIEKLRRRVVATSSSTPLLCWRFLLSRRDRQKRKRIEPKSKIGLIFLVDWRLVWMCLGGSIILVMV
Homology
[Close]
BLAST of Carg27486 vs. NCBI nr
Match: XP_022944412.1 (malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase-like [Cucurbita moschata])

HSP 1 Score: 132.5 bits (332), Expect = 8.7e-28
Identity = 76/104 (73.08%), Postives = 80/104 (76.92%), Query Frame = 0 

Query: 2   GCITLYVKSFAIFVPNPKLLGLTPKEVISDDVVYATFELTCIDIEKLRRRVVATSSSTPL 61
           G  TLYVKSFAIFVPNPKLLGLTPKEVISDDVVYATFELT IDIEKLRRRVVATSSSTP 
Sbjct: 222 GLHTLYVKSFAIFVPNPKLLGLTPKEVISDDVVYATFELTRIDIEKLRRRVVATSSSTPR 281

Query: 62  LCWRFLLS----RRDRQKRKRIEPKSKIGLIFLVDWRLVWMCLG 102
               F+L+         K +R EP+SKIGLIFLVDWR     LG
Sbjct: 282 RLSTFMLAFSLVSTCIVKAQRTEPESKIGLIFLVDWRARMDVLG 325

[Close]
BLAST of Carg27486 vs. NCBI nr
Match: XP_022986173.1 (phenolic glucoside malonyltransferase 1-like [Cucurbita maxima])

HSP 1 Score: 122.9 bits (307), Expect = 6.9e-25
Identity = 72/105 (68.57%), Postives = 77/105 (73.33%), Query Frame = 0 

Query: 2   GCITLYVKSFAIFVPNPKLLGLTPKEVISDDVVYATFELTCIDIEKLRRRVVATSSSTP- 61
           G  T+YVKSF IFV  PKLLGL PKEVISDDVVYATFELTCIDIEK+RRRVVATSSSTP 
Sbjct: 211 GLHTIYVKSFEIFV--PKLLGLAPKEVISDDVVYATFELTCIDIEKVRRRVVATSSSTPR 270

Query: 62  ---LLCWRFLLSRRDRQKRKRIEPKSKIGLIFLVDWRLVWMCLGG 103
               L   F L+     K +RI P+ KIGLIFLVDWR     LGG
Sbjct: 271 RLTTLMLAFSLASTCIVKAQRIAPECKIGLIFLVDWRARMDMLGG 313

[Close]
BLAST of Carg27486 vs. NCBI nr
Match: XP_022986520.1 (phenolic glucoside malonyltransferase 1-like [Cucurbita maxima])

HSP 1 Score: 122.9 bits (307), Expect = 6.9e-25
Identity = 72/105 (68.57%), Postives = 77/105 (73.33%), Query Frame = 0 

Query: 2   GCITLYVKSFAIFVPNPKLLGLTPKEVISDDVVYATFELTCIDIEKLRRRVVATSSSTP- 61
           G  T+YVKSF IFV  PKLLGL PKEVISDDVVYATFELTCIDIEK+RRRVVATSSSTP 
Sbjct: 222 GLHTIYVKSFEIFV--PKLLGLAPKEVISDDVVYATFELTCIDIEKVRRRVVATSSSTPR 281

Query: 62  ---LLCWRFLLSRRDRQKRKRIEPKSKIGLIFLVDWRLVWMCLGG 103
               L   F L+     K +RI P+ KIGLIFLVDWR     LGG
Sbjct: 282 RLTTLMLAFSLASTCIVKAQRIAPECKIGLIFLVDWRARMDMLGG 324

[Close]
BLAST of Carg27486 vs. NCBI nr
Match: XP_022944048.1 (malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase-like [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 4.3e-19
Identity = 62/105 (59.05%), Postives = 69/105 (65.71%), Query Frame = 0 

Query: 2   GCITLYVKSFAIFVPNPKLLGLTPKEVISDDVVYATFELTCIDIEKLRRRVVATSSSTPL 61
           G   LYVK +  FV  PK+LGLTPK VISDDVVYATFELT  DIEKLR +VVATSSSTP 
Sbjct: 229 GLQRLYVKYYGAFVRQPKILGLTPKRVISDDVVYATFELTRTDIEKLRTKVVATSSSTPR 288

Query: 62  LCWRFLLS----RRDRQKRKRIEPKSKIGLIFLVDWRLVWMCLGG 103
               F+L+         K +RIEPKSKI L F +D R     LGG
Sbjct: 289 RLSTFMLAFSLISTCIVKAERIEPKSKIALFFAMDMRPRMGALGG 333

[Close]
BLAST of Carg27486 vs. NCBI nr
Match: XP_022986172.1 (malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase-like, partial [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 3.1e-17
Identity = 59/104 (56.73%), Postives = 66/104 (63.46%), Query Frame = 0 

Query: 2   GCITLYVKSFAIFVPNPKLLGLTPKEVISDDVVYATFELTCIDIEKLRRRVVATSSSTPL 61
           G   LYVK +  FV  PK+LGLTPK VISDDVVYATFELT IDIEKLRR+V   S+ST  
Sbjct: 218 GLQRLYVKHYGAFVRQPKILGLTPKRVISDDVVYATFELTRIDIEKLRRKVATNSTSTRH 277

Query: 62  L---CWRFLLSRRDRQKRKRIEPKSKIGLIFLVDWRLVWMCLGG 103
           L      + L      + +RIEPKSKI L F VD R     LGG
Sbjct: 278 LTTFVLTYALVSTCIVQAERIEPKSKIALFFAVDMRPRMGALGG 321

The following BLAST results are available for this feature:
BLAST of Carg27486 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022944412.18.7e-2873.08malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase-like [Cucurbita... [more]
XP_022986173.16.9e-2568.57phenolic glucoside malonyltransferase 1-like [Cucurbita maxima][more]
XP_022986520.16.9e-2568.57phenolic glucoside malonyltransferase 1-like [Cucurbita maxima][more]
XP_022944048.14.3e-1959.05malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase-like [Cucurbita... [more]
XP_022986172.13.1e-1756.73malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase-like, partial [... [more]
BLAST of Carg27486 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg27486 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg27486 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27486-RACarg27486-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27486CmaCh20G009100Cucurbita maxima (Rimu)carcmaB0760
Carg27486CmoCh20G009170Cucurbita moschata (Rifu)carcmoB0738
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None