Carg27439 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27439
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CRAL-TRIO domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_494 : 40236 .. 40830 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTACGACTGCACAAACTCTCCTCCTCACCTCTCTTCCAACTCATTTATTCCCTCTCTCACACTCTCTGCATTCTCCTATCAGTTCGTCCTCAATTCGGTTCCACGCCTGATCTCATCACCTAACCTCTGCCCGTCGCCGACGTCGATTCACCTCAAAGCACCTCCACGGATTCCGAGATGGAGAATTCTCGCGCCAATGCGCTAATCCAGATGAGGAAAGCCGTCGAGAAATCAGGCATCAACACACAAGTAACAAGAAATCAAAATCCTAATATATTCGTTTTTTCGTTCGATTTTCTGATGGATTTCTGACTCTGTGAGTGTTTCGACAGGAGTACTGTGATGCGACGATGATGAGATTCTTGATCGCGAGGTCTATGGAGCCTTCGAAAGGAGCAAAGATGTTCGTACAATGGCGGAAATGGAGAGATGCGGTGGTTCCGAAGGGTTTTATTTGTGAATCGGAGGTGAAGGAGGAGTTGGAGGCTAAGAAGATTTTCTTGCAGGGATTGTCCAAGACAGGACTGGCTGTGATGATTGTTATGGCTAAACGCCATTTTTCTTCCAAGGATCAACTCCAGTTCAAGAGTTAG

mRNA sequence

AGCTACGACTGCACAAACTCTCCTCCTCACCTCTCTTCCAACTCATTTATTCCCTCTCTCACACTCTCTGCATTCTCCTATCAGTTCGTCCTCAATTCGGTTCCACGCCTGATCTCATCACCTAACCTCTGCCCGTCGCCGACGTCGATTCACCTCAAAGCACCTCCACGGATTCCGAGATGGAGAATTCTCGCGCCAATGCGCTAATCCAGATGAGGAAAGCCGTCGAGAAATCAGGCATCAACACACAAGAGTACTGTGATGCGACGATGATGAGATTCTTGATCGCGAGGTCTATGGAGCCTTCGAAAGGAGCAAAGATGTTCGTACAATGGCGGAAATGGAGAGATGCGGTGGTTCCGAAGGGTTTTATTTGTGAATCGGAGGTGAAGGAGGAGTTGGAGGCTAAGAAGATTTTCTTGCAGGGATTGTCCAAGACAGGACTGGCTGTGATGATTGTTATGGCTAAACGCCATTTTTCTTCCAAGGATCAACTCCAGTTCAAGAGTTAG

Coding sequence (CDS)

ATGGAGAATTCTCGCGCCAATGCGCTAATCCAGATGAGGAAAGCCGTCGAGAAATCAGGCATCAACACACAAGAGTACTGTGATGCGACGATGATGAGATTCTTGATCGCGAGGTCTATGGAGCCTTCGAAAGGAGCAAAGATGTTCGTACAATGGCGGAAATGGAGAGATGCGGTGGTTCCGAAGGGTTTTATTTGTGAATCGGAGGTGAAGGAGGAGTTGGAGGCTAAGAAGATTTTCTTGCAGGGATTGTCCAAGACAGGACTGGCTGTGATGATTGTTATGGCTAAACGCCATTTTTCTTCCAAGGATCAACTCCAGTTCAAGAGTTAG

Protein sequence

MENSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVVPKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFKS

Homology

[Close]

BLAST of Carg27439 vs. NCBI nr
Match: XP_023537304.1 (SEC14 cytosolic factor-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.5 bits (545), Expect = 1.8e-52
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MENSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60
           ME+SRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV
Sbjct: 1   MEDSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60

Query: 61  PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 110
           PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK
Sbjct: 61  PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 109

[Close]

BLAST of Carg27439 vs. NCBI nr
Match: XP_022996420.1 (SEC14 cytosolic factor-like [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 1.9e-51
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MENSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60
           ME+SRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWR WRDA+V
Sbjct: 1   MEDSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRTWRDAMV 60

Query: 61  PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 110
           PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK
Sbjct: 61  PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 109

[Close]

BLAST of Carg27439 vs. NCBI nr
Match: XP_022941638.1 (SEC14 cytosolic factor-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 210.7 bits (535), Expect = 2.5e-51
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MENSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60
           ME+SRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV
Sbjct: 1   MEDSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60

Query: 61  PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 110
           PKGFI ESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK
Sbjct: 61  PKGFISESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 109

[Close]

BLAST of Carg27439 vs. NCBI nr
Match: XP_022941639.1 (sec14 cytosolic factor-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 210.7 bits (535), Expect = 2.5e-51
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MENSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60
           ME+SRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV
Sbjct: 1   MEDSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60

Query: 61  PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 110
           PKGFI ESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK
Sbjct: 61  PKGFISESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 109

[Close]

BLAST of Carg27439 vs. NCBI nr
Match: XP_022146735.1 (sec14 cytosolic factor-like [Momordica charantia])

HSP 1 Score: 172.9 bits (437), Expect = 5.9e-40
Identity = 86/109 (78.90%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MENSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60
           ME SRANAL QMRK+VEK G +T+ Y DATMMRFLIARSMEP+KGAKMFVQWRKWR+A+V
Sbjct: 1   MEESRANALFQMRKSVEKLGFSTEAYGDATMMRFLIARSMEPAKGAKMFVQWRKWREAMV 60

Query: 61  PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 110
           P+G +CESEV EELEA+KIFLQG SK GLAV+IV A RHF SKDQLQFK
Sbjct: 61  PEGSVCESEVAEELEARKIFLQGSSKKGLAVVIVKASRHFPSKDQLQFK 109

[Close]

BLAST of Carg27439 vs. TAIR10
Match: AT1G14820.3 (Sec14p-like phosphatidylinositol transfer family protein)

HSP 1 Score: 116.7 bits (291), Expect = 9.0e-27
Identity = 59/110 (53.64%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 1   MENSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60
           ME S+  AL Q+RK+VEK   +T+ Y   T+MRFL+ARSM+P K AKMFV W+KWR ++V
Sbjct: 1   MEESQELALTQLRKSVEKLSSSTEGYDKPTLMRFLVARSMDPVKAAKMFVDWQKWRASMV 60

Query: 61  -PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 110
            P GFI ESEV++ELE +K+ LQG +K+G  +++V+  +HF+SKD   FK
Sbjct: 61  PPTGFIPESEVQDELEFRKVCLQGPTKSGHPLVLVITSKHFASKDPANFK 110

[Close]

BLAST of Carg27439 vs. TAIR10
Match: AT1G01630.1 (Sec14p-like phosphatidylinositol transfer family protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10
Identity = 30/92 (32.61%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 12  MRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVVPKGFICESEVK 71
           MR   ++    T+E  D  + RFL AR ++  K + MF+ +  W+ +++PKG I E+E+ 
Sbjct: 34  MRALCDRQDPETKEVDDLMIRRFLRARDLDIEKASTMFLNYLTWKRSMLPKGHIPEAEIA 93

Query: 72  EELEAKKIFLQGLSKTGLAVMIVMAKRHFSSK 104
            +L   K+ +QG  K G  + + +  RH  SK
Sbjct: 94  NDLSHNKMCMQGHDKMGRPIAVAIGNRHNPSK 125

[Close]

BLAST of Carg27439 vs. TrEMBL
Match: tr|A0A1S3BT62|A0A1S3BT62_CUCME (sec14 cytosolic factor-like OS=Cucumis melo OX=3656 GN=LOC103493455 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.4e-36
Identity = 79/109 (72.48%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   MENSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60
           ME+S ANA+  +R ++EKSG +TQ+Y DATMMRFLIARSME SK AKMFVQW+KWRDA V
Sbjct: 1   MEDSNANAVTLLRNSIEKSGFSTQDYSDATMMRFLIARSMEVSKAAKMFVQWKKWRDATV 60

Query: 61  PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 110
           PKG+I ESEV++EL+AKKIFLQG+S   L VMIV+A RHF SKDQLQFK
Sbjct: 61  PKGYIAESEVEDELKAKKIFLQGMSIKQLPVMIVIANRHFHSKDQLQFK 109

[Close]

BLAST of Carg27439 vs. TrEMBL
Match: tr|A0A0A0KL83|A0A0A0KL83_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021320 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.6e-36
Identity = 79/109 (72.48%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MENSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60
           ME S ANA+IQ+R ++ KSG +TQ+Y DATMMRFLIARSME  K AKMFVQW+KWRDA V
Sbjct: 1   MEGSSANAVIQLRDSIHKSGFSTQDYSDATMMRFLIARSMEVPKAAKMFVQWKKWRDATV 60

Query: 61  PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 110
           PKG I ESEV++EL+AKKIFLQG+S   L VMIVMA RHF SKDQ+QFK
Sbjct: 61  PKGLIAESEVEDELKAKKIFLQGISIKQLPVMIVMANRHFHSKDQVQFK 109

[Close]

BLAST of Carg27439 vs. TrEMBL
Match: tr|I1JDI4|I1JDI4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100811048 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.6e-31
Identity = 70/109 (64.22%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 1   MENSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60
           M+  R +AL QMRK+VEK G + + Y D T+MRFLIARSME  K AKMF+QW+KWR A+V
Sbjct: 1   MDQGRDSALTQMRKSVEKLGSSAEGYGDPTLMRFLIARSMEVDKAAKMFLQWKKWRSAMV 60

Query: 61  PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 110
           P GFI ESE+ +ELEA+KIFLQGLS+    VMIV   RHF+SKDQ+QFK
Sbjct: 61  PNGFISESEIPDELEARKIFLQGLSQDKFPVMIVQTNRHFASKDQIQFK 109

[Close]

BLAST of Carg27439 vs. TrEMBL
Match: tr|I1JDI5|I1JDI5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100811048 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.6e-31
Identity = 70/109 (64.22%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 1   MENSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60
           M+  R +AL QMRK+VEK G + + Y D T+MRFLIARSME  K AKMF+QW+KWR A+V
Sbjct: 1   MDQGRDSALTQMRKSVEKLGSSAEGYGDPTLMRFLIARSMEVDKAAKMFLQWKKWRSAMV 60

Query: 61  PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 110
           P GFI ESE+ +ELEA+KIFLQGLS+    VMIV   RHF+SKDQ+QFK
Sbjct: 61  PNGFISESEIPDELEARKIFLQGLSQDKFPVMIVQTNRHFASKDQIQFK 109

[Close]

BLAST of Carg27439 vs. TrEMBL
Match: tr|A0A0B2Q2A6|A0A0B2Q2A6_GLYSO (CRAL-TRIO domain-containing protein OS=Glycine soja OX=3848 GN=glysoja_036328 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.6e-31
Identity = 70/109 (64.22%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 1   MENSRANALIQMRKAVEKSGINTQEYCDATMMRFLIARSMEPSKGAKMFVQWRKWRDAVV 60
           M+  R +AL QMRK+VEK G + + Y D T+MRFLIARSME  K AKMF+QW+KWR A+V
Sbjct: 1   MDQGRDSALTQMRKSVEKLGSSAEGYGDPTLMRFLIARSMEVDKAAKMFLQWKKWRSAMV 60

Query: 61  PKGFICESEVKEELEAKKIFLQGLSKTGLAVMIVMAKRHFSSKDQLQFK 110
           P GFI ESE+ +ELEA+KIFLQGLS+    VMIV   RHF+SKDQ+QFK
Sbjct: 61  PNGFISESEIPDELEARKIFLQGLSQDKFPVMIVQTNRHFASKDQIQFK 109

The following BLAST results are available for this feature:

BLAST of Carg27439 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537304.1	1.8e-52	99.08	SEC14 cytosolic factor-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996420.1	1.9e-51	97.25	SEC14 cytosolic factor-like [Cucurbita maxima]	[more]
XP_022941638.1	2.5e-51	98.17	SEC14 cytosolic factor-like isoform X1 [Cucurbita moschata]	[more]
XP_022941639.1	2.5e-51	98.17	sec14 cytosolic factor-like isoform X2 [Cucurbita moschata]	[more]
XP_022146735.1	5.9e-40	78.90	sec14 cytosolic factor-like [Momordica charantia]	[more]

BLAST of Carg27439 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14820.3	9.0e-27	53.64	Sec14p-like phosphatidylinositol transfer family protein	[more]
AT1G01630.1	3.5e-10	32.61	Sec14p-like phosphatidylinositol transfer family protein	[more]

BLAST of Carg27439 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27439 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BT62\|A0A1S3BT62_CUCME	3.4e-36	72.48	sec14 cytosolic factor-like OS=Cucumis melo OX=3656 GN=LOC103493455 PE=4 SV=1	[more]
tr\|A0A0A0KL83\|A0A0A0KL83_CUCSA	7.6e-36	72.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021320 PE=4 SV=1	[more]
tr\|I1JDI4\|I1JDI4_SOYBN	5.6e-31	64.22	Uncharacterized protein OS=Glycine max OX=3847 GN=100811048 PE=4 SV=1	[more]
tr\|I1JDI5\|I1JDI5_SOYBN	5.6e-31	64.22	Uncharacterized protein OS=Glycine max OX=3847 GN=100811048 PE=4 SV=1	[more]
tr\|A0A0B2Q2A6\|A0A0B2Q2A6_GLYSO	5.6e-31	64.22	CRAL-TRIO domain-containing protein OS=Glycine soja OX=3848 GN=glysoja_036328 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036273	CRAL/TRIO_N_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27439-RA	Carg27439-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.8.20		coord: 1..58 e-value: 5.5E-9 score: 38.0
None	No IPR available	PANTHER	PTHR10174:SF121	SUBFAMILY NOT NAMED	coord: 4..109
None	No IPR available	PANTHER	PTHR10174	RETINALDEHYDE BINDING PROTEIN-RELATED	coord: 4..109
IPR036273	CRAL/TRIO, N-terminal domain superfamily	SUPERFAMILY	SSF46938	CRAL/TRIO N-terminal domain	coord: 3..65

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27439	Cucumber (Chinese Long) v3	carcucB1014
Carg27439	Silver-seed gourd	carcarB571
Carg27439	Cucumber (Gy14) v2	carcgybB0959
Carg27439	Cucurbita maxima (Rimu)	carcmaB1343
Carg27439	Cucurbita maxima (Rimu)	carcmaB1344
Carg27439	Cucurbita moschata (Rifu)	carcmoB1305
Carg27439	Cucurbita moschata (Rifu)	carcmoB1306
Carg27439	Cucurbita pepo (Zucchini)	carcpeB1348
Carg27439	Cucurbita pepo (Zucchini)	carcpeB1349
Carg27439	Wild cucumber (PI 183967)	carcpiB1009
Carg27439	Cucumber (Chinese Long) v2	carcuB0986
Carg27439	Watermelon (Charleston Gray)	carwcgB0950
Carg27439	Watermelon (97103) v1	carwmB0977
Carg27439	Watermelon (97103) v2	carwmbB1026
Carg27439	Wax gourd	carwgoB1140