Carg27380 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGTGGGATCCGAGCAATTGTCTCCTATCGTTCTGGAGTCCTCTTCAAATTCAATCTAACAATCTGTATTTTCTGAAATTTTTATTAGGATTCTCTTCATATAACTCTGCGGCATCATGTTCAAAAAGTGAGTTCTCTCTATATTGCTCGTTATTCGGCTATGATTTCATGTCTTTGCTTGATGATTGTGGAAAATGATATCTAGGTTTTGTTTTTCGGGGATTAAAATATGAGGAAATGGTTTGATTTCTTCACTTTTTGTTACTGGTCTCTGGATTTTGCTCGATTAGTGTCTTCTCTCTCGTTCTACGCTGGGGATTTGTTTGTAGGGTTGATTCTTCTCATAGGAAAAGAGGATTGTTTTGCTTCTGTTTTTCGATTGATTGTTTTGCCCTAGATTTCTACTTGCCGAGAGTCGTTATCGTTGTCGTAATGTGTCATAATGTGCGGAAATAATCATTTGAAACTTCGATATAAGACATAAACTTCATCTTAAAACACTGTCATGAGCTTACTTGTTCGAAAACATCTTTAAACCGACACAACGAAATACTAAATGCAATAAATAAATATTAGAATTAATGCAACTATCCTATGCACGTGTCATGGTTTCGAATTGCGATGTCGTCGTTAGCCGTAGAGGCCTTGCCTTTACTTGAAAATGATTGTTTTGCTTCTATTTTTCGTTTGATTGTTTGCCCTAGATTTCTATTTGTCGAGAGTTGCTATCGTCGTCATAATGTGCAGAAATAATCATTTGAAACTTTGACATAAGACATAAACTTCATCTTAAAACACTGTCATGGACTTACATGTTCGAAAACATCTTTAAAACGACTCAACGAAATACTAAATGAAATAAATAGACATTAGAATTAAAAACATCTTATCCTAACCTAAGACTAAGGAAATAAATGCAACTGCCCTATGCATGTGTCATGGTCTCGAGTTGCGATATCATTGTTACCCGTACAGGGATGCCTTGCCTTTCCCTGAACAAATGATTATTTTGCTTCTATTTTTTCGTTTGATTCTTTTGGGCAGCTGTGGATAAATCATTGTTGCTGAATTTGAACATTGAATTGAAATGATAGTTTTGGAGTTGGGATGTTTTCTTGTGGAGTTGAGTGAGTGTGTTGTTTGTACAAATCTTTCAATTGTGTTCTTTTTGCTGTCTTATTGTAGGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAAGTAAGCATTGGTTTAACCGTTCGAATCTCGGAATCATGTTCATTAGATAGCAACTGATATCTACCTGTTTTTTGTCTTTTGATTGCAGTATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGGTTAGAACTTCTGTTTGCTTCTATTTTTGCAGAAAATGATGGATGTTCTTTGTTTTTCTTTGTTAATTTGATCATATGAGGCTTATGTTGGATTTTGTTTTTGGATTTATAGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATGTAATGTTCTTCTGATAACCCTTTTAACTTCTGTTGCAATATGTATCATTTTTGTGGATCTTTTTTCTTAAACATGTAAGCCCATTGCATTGTTTTGTGAAGATGTTTTAAATGAATATTTCCGCACAAGATGTTATGTCATGCATGTAGTAGTGACATTAGATTAGTAGAAAACTAGGGTCGTTACAATATTCTTCTGACAACCCTTGTAACTTCTATTGCAATACATATCGTAGGTGTTGAGGATTGTTGGGAGGGAGTCCCACATTGACTAATTAAGAGGACAATCCTTGGTTTGTAAGTAAGGAATATATCTCCATTGGTGGGGGAGGCCTTTTGGGGAAACCAAAAGCAAAACCACGAGAGTTAT TCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGTGGGATCCGAGCAATTGTCTCCTATCGTTCTGGAGTCCTCTTCAAATTCAATCTAACAATCTGTATTTTCTGAAATTTTTATTAGGATTCTCTTCATATAACTCTGCGGCATCATGTTCAAAAAGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATGTAATGTTCTTCTGATAACCCTTTTAACTTCTGTTGCAATATGTATCATTTTTGTGGATCTTTTTTCTTAAACATGTAAGCCCATTGCATTGTTTTGTGAAGATGTTTTAAATGAATATTTCCGCACAAGATGTTATGTCATGCATGTAGTAGTGACATTAGATTAGTAGAAAACTAGGGTCGTTACAATATTCTTCTGACAACCCTTGTAACTTCTATTGCAATACATATCGTAGGTGTTGAGGATTGTTGGGAGGGAGTCCCACATTGACTAATTAAGAGGACAATCCTTGGTTTGTAAGTAAGGAATATATCTCCATTGGTGGGGGAGGCCTTTTGGGGAAACCAAAAGCAAAACCACGAGAGTTAT ATGTTCAAAAAGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGA MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQSGCCEQCATLFQYP
BLAST of Carg27380 vs. NCBI nr
Match: XP_022961538.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita moschata]) HSP 1 Score: 99.0 bits (245), Expect = 6.7e-18 Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. NCBI nr
Match: XP_022968801.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita maxima]) HSP 1 Score: 99.0 bits (245), Expect = 6.7e-18 Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. NCBI nr
Match: XP_023515958.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 99.0 bits (245), Expect = 6.7e-18 Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. NCBI nr
Match: ACA24498.1 (pseudouridine synthase and archaeosine transglycosylase-like protein [Cucumis sativus]) HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17 Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. NCBI nr
Match: XP_008450609.1 (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Cucumis melo]) HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17 Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. TAIR10
Match: AT1G09150.1 (pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein) HSP 1 Score: 80.9 bits (198), Expect = 3.4e-16 Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 0
BLAST of Carg27380 vs. Swiss-Prot
Match: sp|Q75AA8|TMA20_ASHGO (Translation machinery-associated protein 20 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=TMA20 PE=3 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 4.3e-08 Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0
BLAST of Carg27380 vs. Swiss-Prot
Match: sp|P89886|TMA20_YEAST (Translation machinery-associated protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TMA20 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 2.1e-07 Identity = 22/49 (44.90%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of Carg27380 vs. Swiss-Prot
Match: sp|Q86KL4|MCTS1_DICDI (Malignant T-cell-amplified sequence 1 homolog OS=Dictyostelium discoideum OX=44689 GN=mcts1 PE=3 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05 Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 0
BLAST of Carg27380 vs. Swiss-Prot
Match: sp|P87313|TMA20_SCHPO (Translation machinery-associated protein 20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tma20 PE=3 SV=5) HSP 1 Score: 48.9 bits (115), Expect = 2.6e-05 Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Carg27380 vs. Swiss-Prot
Match: sp|Q2KIE4|MCTS1_BOVIN (Malignant T-cell-amplified sequence 1 OS=Bos taurus OX=9913 GN=MCTS1 PE=2 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04 Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Carg27380 vs. TrEMBL
Match: tr|A0A1S3BPJ3|A0A1S3BPJ3_CUCME (malignant T-cell-amplified sequence 1 homolog OS=Cucumis melo OX=3656 GN=LOC103492146 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 9.9e-18 Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. TrEMBL
Match: tr|A0A0A0LYF6|A0A0A0LYF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569260 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 9.9e-18 Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. TrEMBL
Match: tr|B3TLK5|B3TLK5_CUCSA (Pseudouridine synthase and archaeosine transglycosylase-like protein OS=Cucumis sativus OX=3659 PE=2 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 9.9e-18 Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. TrEMBL
Match: tr|A0A061F3B7|A0A061F3B7_THECC (Pseudouridine synthase and archaeosine transglycosylase domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_026681 PE=4 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 6.4e-17 Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg27380 vs. TrEMBL
Match: tr|W9RLW3|W9RLW3_9ROSA (Malignant T-cell-amplified sequence 1 OS=Morus notabilis OX=981085 GN=L484_003051 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 8.4e-17 Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |