Carg27380 (gene) Silver-seed gourd

NameCarg27380
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranslation machinery-associated protein 20
LocationCucurbita_argyrosperma_scaffold_396 : 101679 .. 103730 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGTGGGATCCGAGCAATTGTCTCCTATCGTTCTGGAGTCCTCTTCAAATTCAATCTAACAATCTGTATTTTCTGAAATTTTTATTAGGATTCTCTTCATATAACTCTGCGGCATCATGTTCAAAAAGTGAGTTCTCTCTATATTGCTCGTTATTCGGCTATGATTTCATGTCTTTGCTTGATGATTGTGGAAAATGATATCTAGGTTTTGTTTTTCGGGGATTAAAATATGAGGAAATGGTTTGATTTCTTCACTTTTTGTTACTGGTCTCTGGATTTTGCTCGATTAGTGTCTTCTCTCTCGTTCTACGCTGGGGATTTGTTTGTAGGGTTGATTCTTCTCATAGGAAAAGAGGATTGTTTTGCTTCTGTTTTTCGATTGATTGTTTTGCCCTAGATTTCTACTTGCCGAGAGTCGTTATCGTTGTCGTAATGTGTCATAATGTGCGGAAATAATCATTTGAAACTTCGATATAAGACATAAACTTCATCTTAAAACACTGTCATGAGCTTACTTGTTCGAAAACATCTTTAAACCGACACAACGAAATACTAAATGCAATAAATAAATATTAGAATTAATGCAACTATCCTATGCACGTGTCATGGTTTCGAATTGCGATGTCGTCGTTAGCCGTAGAGGCCTTGCCTTTACTTGAAAATGATTGTTTTGCTTCTATTTTTCGTTTGATTGTTTGCCCTAGATTTCTATTTGTCGAGAGTTGCTATCGTCGTCATAATGTGCAGAAATAATCATTTGAAACTTTGACATAAGACATAAACTTCATCTTAAAACACTGTCATGGACTTACATGTTCGAAAACATCTTTAAAACGACTCAACGAAATACTAAATGAAATAAATAGACATTAGAATTAAAAACATCTTATCCTAACCTAAGACTAAGGAAATAAATGCAACTGCCCTATGCATGTGTCATGGTCTCGAGTTGCGATATCATTGTTACCCGTACAGGGATGCCTTGCCTTTCCCTGAACAAATGATTATTTTGCTTCTATTTTTTCGTTTGATTCTTTTGGGCAGCTGTGGATAAATCATTGTTGCTGAATTTGAACATTGAATTGAAATGATAGTTTTGGAGTTGGGATGTTTTCTTGTGGAGTTGAGTGAGTGTGTTGTTTGTACAAATCTTTCAATTGTGTTCTTTTTGCTGTCTTATTGTAGGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAAGTAAGCATTGGTTTAACCGTTCGAATCTCGGAATCATGTTCATTAGATAGCAACTGATATCTACCTGTTTTTTGTCTTTTGATTGCAGTATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTGTAACTAAGTGGTTAGAACTTCTGTTTGCTTCTATTTTTGCAGAAAATGATGGATGTTCTTTGTTTTTCTTTGTTAATTTGATCATATGAGGCTTATGTTGGATTTTGTTTTTGGATTTATAGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATGTAATGTTCTTCTGATAACCCTTTTAACTTCTGTTGCAATATGTATCATTTTTGTGGATCTTTTTTCTTAAACATGTAAGCCCATTGCATTGTTTTGTGAAGATGTTTTAAATGAATATTTCCGCACAAGATGTTATGTCATGCATGTAGTAGTGACATTAGATTAGTAGAAAACTAGGGTCGTTACAATATTCTTCTGACAACCCTTGTAACTTCTATTGCAATACATATCGTAGGTGTTGAGGATTGTTGGGAGGGAGTCCCACATTGACTAATTAAGAGGACAATCCTTGGTTTGTAAGTAAGGAATATATCTCCATTGGTGGGGGAGGCCTTTTGGGGAAACCAAAAGCAAAACCACGAGAGTTAT

mRNA sequence

TCTTCTCTCGACGTCTGCGTACTCTCTTCCCATTTCCACACCGATCCTCTGGTGGGATCCGAGCAATTGTCTCCTATCGTTCTGGAGTCCTCTTCAAATTCAATCTAACAATCTGTATTTTCTGAAATTTTTATTAGGATTCTCTTCATATAACTCTGCGGCATCATGTTCAAAAAGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGATGGGCCCTACATGCCTACATTAAGGTTGCTTCATCAATGTAATGTTCTTCTGATAACCCTTTTAACTTCTGTTGCAATATGTATCATTTTTGTGGATCTTTTTTCTTAAACATGTAAGCCCATTGCATTGTTTTGTGAAGATGTTTTAAATGAATATTTCCGCACAAGATGTTATGTCATGCATGTAGTAGTGACATTAGATTAGTAGAAAACTAGGGTCGTTACAATATTCTTCTGACAACCCTTGTAACTTCTATTGCAATACATATCGTAGGTGTTGAGGATTGTTGGGAGGGAGTCCCACATTGACTAATTAAGAGGACAATCCTTGGTTTGTAAGTAAGGAATATATCTCCATTGGTGGGGGAGGCCTTTTGGGGAAACCAAAAGCAAAACCACGAGAGTTAT

Coding sequence (CDS)

ATGTTCAAAAAGTTTTCTACTGAAGACGTGTCTGCCCAGAATCAAGTCAAGGCATCGGTGCAACGGAGGATTCGGCAAAGCATAGCTGAAGAATATCCTGGACTGGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGCTCCTCTGATTTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTCAATATCCGTGA

Protein sequence

MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQSGCCEQCATLFQYP
BLAST of Carg27380 vs. NCBI nr
Match: XP_022961538.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita moschata])

HSP 1 Score: 99.0 bits (245), Expect = 6.7e-18
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. NCBI nr
Match: XP_022968801.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita maxima])

HSP 1 Score: 99.0 bits (245), Expect = 6.7e-18
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. NCBI nr
Match: XP_023515958.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.0 bits (245), Expect = 6.7e-18
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. NCBI nr
Match: ACA24498.1 (pseudouridine synthase and archaeosine transglycosylase-like protein [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. NCBI nr
Match: XP_008450609.1 (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. TAIR10
Match: AT1G09150.1 (pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein)

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-16
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLI 51
          MFKKF  E++S+QNQVKASVQRRIRQSI +EYPGLE V++DLLPKK PLI
Sbjct: 1  MFKKFCLEEISSQNQVKASVQRRIRQSIQDEYPGLESVMEDLLPKKIPLI 50

BLAST of Carg27380 vs. Swiss-Prot
Match: sp|Q75AA8|TMA20_ASHGO (Translation machinery-associated protein 20 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=TMA20 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-08
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL 50
          MFKKFS ED+  + +VK SVQR ++  + E++P LE V+D+LLPKK  L
Sbjct: 1  MFKKFSKEDIHTRTKVKTSVQRSLKSKLVEQFPKLEEVIDELLPKKTEL 49

BLAST of Carg27380 vs. Swiss-Prot
Match: sp|P89886|TMA20_YEAST (Translation machinery-associated protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TMA20 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-07
Identity = 22/49 (44.90%), Postives = 40/49 (81.63%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL 50
          MFKKF+ EDV ++++VK+S+QR ++  + ++YP +E V+D+L+PKK+ +
Sbjct: 1  MFKKFTREDVHSRSKVKSSIQRTLKAKLVKQYPKIEDVIDELIPKKSQI 49

BLAST of Carg27380 vs. Swiss-Prot
Match: sp|Q86KL4|MCTS1_DICDI (Malignant T-cell-amplified sequence 1 homolog OS=Dictyostelium discoideum OX=44689 GN=mcts1 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 1  MFKKFSTEDVS-AQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKK S +  S   NQ+K+S+QR I+ SI  +YP L+ + +D+ PKK P++    Q+
Sbjct: 1  MFKKLSLKGSSNTNNQIKSSLQRNIKNSILAQYPKLKDIEEDVFPKKVPIVQVKCQN 57

BLAST of Carg27380 vs. Swiss-Prot
Match: sp|P87313|TMA20_SCHPO (Translation machinery-associated protein 20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tma20 PE=3 SV=5)

HSP 1 Score: 48.9 bits (115), Expect = 2.6e-05
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 1  MFKKF-STEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL 50
          MFK+F S ED+     +K+S+QR I+  + + YP L+ V+D+L+PKK+ L
Sbjct: 1  MFKRFNSREDIKGTTPIKSSIQRGIKAKLVQAYPNLKQVIDELIPKKSQL 50

BLAST of Carg27380 vs. Swiss-Prot
Match: sp|Q2KIE4|MCTS1_BOVIN (Malignant T-cell-amplified sequence 1 OS=Bos taurus OX=9913 GN=MCTS1 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 1  MFKKF-STEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPL 50
          MFKKF   E+VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+
Sbjct: 1  MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPV 50

BLAST of Carg27380 vs. TrEMBL
Match: tr|A0A1S3BPJ3|A0A1S3BPJ3_CUCME (malignant T-cell-amplified sequence 1 homolog OS=Cucumis melo OX=3656 GN=LOC103492146 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.9e-18
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. TrEMBL
Match: tr|A0A0A0LYF6|A0A0A0LYF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569260 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.9e-18
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. TrEMBL
Match: tr|B3TLK5|B3TLK5_CUCSA (Pseudouridine synthase and archaeosine transglycosylase-like protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.9e-18
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQN 56

BLAST of Carg27380 vs. TrEMBL
Match: tr|A0A061F3B7|A0A061F3B7_THECC (Pseudouridine synthase and archaeosine transglycosylase domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_026681 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.4e-17
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFS+EDVS+QNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLI    Q+
Sbjct: 1  MFKKFSSEDVSSQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVAKCQN 56

BLAST of Carg27380 vs. TrEMBL
Match: tr|W9RLW3|W9RLW3_9ROSA (Malignant T-cell-amplified sequence 1 OS=Morus notabilis OX=981085 GN=L484_003051 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.4e-17
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0

Query: 1  MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLISKPSQS 57
          MFKKFS EDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKK+PLI    Q+
Sbjct: 1  MFKKFSAEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKSPLIVTKCQN 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022961538.16.7e-1891.07malignant T-cell-amplified sequence 1 homolog [Cucurbita moschata][more]
XP_022968801.16.7e-1891.07malignant T-cell-amplified sequence 1 homolog [Cucurbita maxima][more]
XP_023515958.16.7e-1891.07malignant T-cell-amplified sequence 1 homolog [Cucurbita pepo subsp. pepo][more]
ACA24498.11.5e-1789.29pseudouridine synthase and archaeosine transglycosylase-like protein [Cucumis sa... [more]
XP_008450609.11.5e-1789.29PREDICTED: malignant T-cell-amplified sequence 1 homolog [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT1G09150.13.4e-1678.00pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing ... [more]
Match NameE-valueIdentityDescription
sp|Q75AA8|TMA20_ASHGO4.3e-0853.06Translation machinery-associated protein 20 OS=Ashbya gossypii (strain ATCC 1089... [more]
sp|P89886|TMA20_YEAST2.1e-0744.90Translation machinery-associated protein 20 OS=Saccharomyces cerevisiae (strain ... [more]
sp|Q86KL4|MCTS1_DICDI2.0e-0542.11Malignant T-cell-amplified sequence 1 homolog OS=Dictyostelium discoideum OX=446... [more]
sp|P87313|TMA20_SCHPO2.6e-0544.00Translation machinery-associated protein 20 OS=Schizosaccharomyces pombe (strain... [more]
sp|Q2KIE4|MCTS1_BOVIN2.9e-0446.00Malignant T-cell-amplified sequence 1 OS=Bos taurus OX=9913 GN=MCTS1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A1S3BPJ3|A0A1S3BPJ3_CUCME9.9e-1889.29malignant T-cell-amplified sequence 1 homolog OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A0A0A0LYF6|A0A0A0LYF6_CUCSA9.9e-1889.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569260 PE=4 SV=1[more]
tr|B3TLK5|B3TLK5_CUCSA9.9e-1889.29Pseudouridine synthase and archaeosine transglycosylase-like protein OS=Cucumis ... [more]
tr|A0A061F3B7|A0A061F3B7_THECC6.4e-1785.71Pseudouridine synthase and archaeosine transglycosylase domain-containing protei... [more]
tr|W9RLW3|W9RLW3_9ROSA8.4e-1785.71Malignant T-cell-amplified sequence 1 OS=Morus notabilis OX=981085 GN=L484_00305... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016437MCT-1/Tma20
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27380-RACarg27380-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016437MCT-1/Tma20PANTHERPTHR22798MCT-1 PROTEINcoord: 1..50

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None