Carg27377 (gene) Silver-seed gourd

NameCarg27377
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionArginine/serine-rich splicing factor
LocationCucurbita_argyrosperma_scaffold_396 : 65624 .. 68112 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCAGGTAAAGACTTGTCTTAGCCTTTTATACAACCTCAATCCGATATGTCGTAGGTAAAGACGGATTTAATCTCCTTTTTGTCCTCCATAAAATTGTTATTAATTATTTATACTTTATGAAAGCTTTGGACACGTGGCGTAGTGAAATTACCTTTTGACAGAGGTCGGAAGTTCTACATGGGAGGGTAAAAGAGTCAAGAGTGGTTAAGGCACAAGATTCTAGTCTAGCCCAGCTTCAGCCACTATATAATACCCTGTTTTCCCATTCTCGATTTTTTTCATGAACTCAGAAATCTTCAAGAATCATCTCCTCTGTTTTCTCTCTAGCCTTAAAATCAACAGGTATCAATTGTTCTCCTTCAATTTGTAGTTTTCACTTTCGAATTTTTGTTTTCAGTTCTTGACAGAAGAATGAAGATTTCGTCATTTCGCGTGTTGATTCTCTTTTTCATTTCGATTTTTGTGTTAATTTTGATAGCATGGTGATGATCGATGACTGCGATTATGCCTCCATAGGTTATTCTTCTCTATCACTATTTTAATCTATACGCTGCTCTTTCTACTGTGTGATGCAATTTCTGTTGCCATTTATTGTTATCCTTTTCAAGATTTTGTACTTACTGTTCACGACGAAGGAGACGATGAGTAGCAGAAATAGTCGCACTATCTATGTTGGAAATCTTCCTGGAGATATTCGTTTGAGTGAAGTAGAAGATCTATTTTACAAGGTTTGATATCCTCGAATGCATACTTGTTTTGGTGAAATTTTTGTTTTAAAGTATTCGAGTCTGTGGATGGAACATTTTCATCTGAGTCCCTAAAAATGTTTTTTGTTATCATTTTGGGTGTGGTATTCAAAGGATCCAAGTAGTTGCACTGAGCTGTTGGTGATCCTTATGTAAAACTTTTATTGTCTTCATCAGTTTGAAGATATTCATGATGCTGAAGACGCGATTTACGGTCATGATGGATATAAGTTCAACGGATGTTGATTACAGGTACTAGTCGCAATGCATGCTTGCTGATATTATTCCTCTATGATGTTTTATCCTCGTATGGAATTGTGAGATCCCACATTGGTTGTAGAGGAGAACGAAACATGTTTTTATAAGGGGTGGAAACCTGTCCTAGCAGATACATTTTAAAAACCTTGAGGGGAAGTCCGAAAGGGAAAGCCCAAAGAGGACAATATGATTAGCGGTGAGCTTGCAGATTAGAAAACTTGATTCATTTGAATGGGTAACAGTCTCTGTTTTGGGTTTTGCGTTCCTATCTTAATGCATTTGCCTGGTGCTTTGGTTCTATTCTTTATGAAATGGATGATGTCAAGTCTAGGCTTGTGTTGTTCCCATTGATGAAGATGTGGAGAACTTGGCTTCAATACCCCGACAACCTCGATGCCGATATTCTTTCCTTATTCATGATTTCCCAATTGTTGCTAACACTTGTGGAAAAGCTTGTTGAGTTGTACTGTCGTAATCTCGTGCAGTCGGTCGAGAATTATTTTCTCCGAAACATGCTGTTCTATAGTACCTAAAACTTTTTTGCACATTAATTCTACGTTAGTATGTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATACGCGTTTTAAGAACCTTGAGGAGAAGCCTGAAAGGGAAAGTTCAAATAAGACAATATCTGCTAGTGTGTTCTTCCCTCTCCCCCTGTCTTGCCACTGACTGTTCATCCGCTTGGATTCTATATTTCTAGTCAACTGTTGATGACATAGGAGGAAGAGTTGAGAATATGCCTTCGTTGTCGAATGTGGATCGCCATCATTTCGACTTTTGGCTATAGACCCAGAATTTCCTAGATACTCGATATCGTTTATCTCTTTTTCCCAGGTCGAGATCAACGTCGAGATCAAGATCAGGATCGCCAGTTTCATATATAGCCCTCCCCTTTCTTTGGATTGTCTTAGGGACTTCTATTCTGTTTCTCATTGTTTCATTGATTGCAGCGTCGACAAACCTCCGAGTCGGAGCAGATCTCGGTCCAAGTACAGAAACATATCCAGATCCCTTTCACCTAATGTAAGATCCTGATTCAGACTTGCATATTTCTTAGAACAAAGATAACAGTATGTCCAGACTTGGTTTCTTTTAAGACGTAATAACGAATATGAACTCCGACTTAAGCAGGTGAGCCCAGTTCGAAGCTATAGCCGATCGGTTGATTCCAGGTACTGATATTCAGAATAGAACATTGTTGTTGTGATGGTTCTTGGATAGGATAATAAAGGTTAGGAGAAAAGTCTTTGATGATGTTTATGTTTATAATTTGAGATGAGATAATTCACTGTCTTCATTGGGGCTGTTATTCTCTTGTCTTCTAAATCTTATAGATGTACTTTTCTGTCTTTTCGCGTTTTTATTTCCCCTAATAATTTCTCGAGAGGTCGAGATGCAATATTACTTCAGG

mRNA sequence

ATGTCGCAGATTTTGTACTTACTGTTCACGACGAAGGAGACGATGAGTAGCAGAAATAGTCGCACTATCTATGTTGGAAATCTTCCTGGAGATATTCGTTTGAGTGAAGTAGAAGATCTATTTTACAAGTTTGAAGATATTCATGATGCTGAAGACGCGATTTACGCGTCGACAAACCTCCGAGTCGGAGCAGATCTCGGTCCAAGTACAGAAACATATCCAGATCCCTTTCACCTAATCAGGTGAGCCCAGTTCGAAGCTATAGCCGATCGGTTGATTCCAGGTACTGATATTCAGAATAGAACATTGTTGTTGTGATGGTTCTTGGATAGGATAATAAAGGTTAGGAGAAAAGTCTTTGATGATGTTTATGTTTATAATTTGAGATGAGATAATTCACTGTCTTCATTGGGGCTGTTATTCTCTTGTCTTCTAAATCTTATAGATGTACTTTTCTGTCTTTTCGCGTTTTTATTTCCCCTAATAATTTCTCGAGAGGTCGAGATGCAATATTACTTCAGG

Coding sequence (CDS)

ATGTCGCAGATTTTGTACTTACTGTTCACGACGAAGGAGACGATGAGTAGCAGAAATAGTCGCACTATCTATGTTGGAAATCTTCCTGGAGATATTCGTTTGAGTGAAGTAGAAGATCTATTTTACAAGTTTGAAGATATTCATGATGCTGAAGACGCGATTTACGCGTCGACAAACCTCCGAGTCGGAGCAGATCTCGGTCCAAGTACAGAAACATATCCAGATCCCTTTCACCTAATCAGGTGA

Protein sequence

MSQILYLLFTTKETMSSRNSRTIYVGNLPGDIRLSEVEDLFYKFEDIHDAEDAIYASTNLRVGADLGPSTETYPDPFHLIR
BLAST of Carg27377 vs. NCBI nr
Match: XP_022961397.1 (serine/arginine-rich splicing factor SR30-like [Cucurbita moschata])

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 49/75 (65.33%), Postives = 51/75 (68.00%), Query Frame = 0

Query: 3  QILYLLFTTKETMSSRNSRTIYVGNLPGDIRLSEVEDLFYKF------------------ 56
          +IL LLFTTKETMSSRNSRTIYVGNLPGDI LSEVEDLFYK+                  
Sbjct: 13 KILCLLFTTKETMSSRNSRTIYVGNLPGDILLSEVEDLFYKYGRIVNIDLKNPPRPPGYA 72

BLAST of Carg27377 vs. NCBI nr
Match: EEE54434.1 (hypothetical protein OsJ_01505 [Oryza sativa Japonica Group])

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-10
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 7   LLFTTKETMSSRNSRTIYVGNLPGDIRLSEVEDLFYKFEDIHDAEDAI 55
           L  +  ETMS RNSRTIYVGNLPGDIR  EVEDLFYKFED  DA+DAI
Sbjct: 64  LSLSPSETMSRRNSRTIYVGNLPGDIREREVEDLFYKFEDPRDADDAI 111

BLAST of Carg27377 vs. NCBI nr
Match: XP_022135868.1 (serine/arginine-rich splicing factor SR30 isoform X3 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 38/63 (60.32%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 15 MSSRNSRTIYVGNLPGDIRLSEVEDLFYK----------------------FEDIHDAED 56
          MSSRNSRTIYVGNLPGDIRL EVEDLFYK                      FED+ DAED
Sbjct: 1  MSSRNSRTIYVGNLPGDIRLKEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

BLAST of Carg27377 vs. NCBI nr
Match: XP_022135865.1 (serine/arginine-rich splicing factor SR30 isoform X1 [Momordica charantia] >XP_022135866.1 serine/arginine-rich splicing factor SR30 isoform X1 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 38/63 (60.32%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 15 MSSRNSRTIYVGNLPGDIRLSEVEDLFYK----------------------FEDIHDAED 56
          MSSRNSRTIYVGNLPGDIRL EVEDLFYK                      FED+ DAED
Sbjct: 1  MSSRNSRTIYVGNLPGDIRLKEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

BLAST of Carg27377 vs. NCBI nr
Match: XP_022135867.1 (serine/arginine-rich splicing factor SR30 isoform X2 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 38/63 (60.32%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 15 MSSRNSRTIYVGNLPGDIRLSEVEDLFYK----------------------FEDIHDAED 56
          MSSRNSRTIYVGNLPGDIRL EVEDLFYK                      FED+ DAED
Sbjct: 1  MSSRNSRTIYVGNLPGDIRLKEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

BLAST of Carg27377 vs. TAIR10
Match: AT1G09140.1 (SERINE-ARGININE PROTEIN 30)

HSP 1 Score: 59.7 bits (143), Expect = 9.7e-10
Identity = 42/101 (41.58%), Postives = 46/101 (45.54%), Query Frame = 0

Query: 15  MSSRNSRTIYVGNLPGDIRLSEVEDLFYK----------------------FEDIHDAED 74
           MSSR +RTIYVGNLPGDIR  EVEDLFYK                      FED  DA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 75  AIYA-------STNLRV-----GADLGPSTETYPDPFHLIR 82
           AIY           LRV     G    PS + Y   +   R
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR 101

BLAST of Carg27377 vs. TAIR10
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 57.4 bits (137), Expect = 4.8e-09
Identity = 34/63 (53.97%), Postives = 36/63 (57.14%), Query Frame = 0

Query: 15 MSSRNSRTIYVGNLPGDIRLSEVEDLFYK----------------------FEDIHDAED 56
          MSSR+SRTIYVGNLPGDIR  EVEDLF K                      FED  DA+D
Sbjct: 1  MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

BLAST of Carg27377 vs. TAIR10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-08
Identity = 32/63 (50.79%), Postives = 36/63 (57.14%), Query Frame = 0

Query: 15 MSSRNSRTIYVGNLPGDIRLSEVEDLFYK----------------------FEDIHDAED 56
          MSSR+SRT+YVGNLPGDIR  EVEDLF K                      F+D  DAED
Sbjct: 1  MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

BLAST of Carg27377 vs. TAIR10
Match: AT3G49430.1 (SER/ARG-rich protein 34A)

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 15 MSSRNSRTIYVGNLPGDIRLSEVEDLFYKFEDIHDAE 52
          MS R SR+IYVGNLPGDIR  E+ED+FYK+  I D E
Sbjct: 1  MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIE 37

BLAST of Carg27377 vs. Swiss-Prot
Match: sp|Q9XFR5|SR30_ARATH (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-08
Identity = 42/101 (41.58%), Postives = 46/101 (45.54%), Query Frame = 0

Query: 15  MSSRNSRTIYVGNLPGDIRLSEVEDLFYK----------------------FEDIHDAED 74
           MSSR +RTIYVGNLPGDIR  EVEDLFYK                      FED  DA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 75  AIYA-------STNLRV-----GADLGPSTETYPDPFHLIR 82
           AIY           LRV     G    PS + Y   +   R
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR 101

BLAST of Carg27377 vs. Swiss-Prot
Match: sp|F4JHI7|SR34B_ARATH (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.6e-08
Identity = 34/63 (53.97%), Postives = 36/63 (57.14%), Query Frame = 0

Query: 15 MSSRNSRTIYVGNLPGDIRLSEVEDLFYK----------------------FEDIHDAED 56
          MSSR+SRTIYVGNLPGDIR  EVEDLF K                      FED  DA+D
Sbjct: 1  MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

BLAST of Carg27377 vs. Swiss-Prot
Match: sp|O22315|SR34_ARATH (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-07
Identity = 32/63 (50.79%), Postives = 36/63 (57.14%), Query Frame = 0

Query: 15 MSSRNSRTIYVGNLPGDIRLSEVEDLFYK----------------------FEDIHDAED 56
          MSSR+SRT+YVGNLPGDIR  EVEDLF K                      F+D  DAED
Sbjct: 1  MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

BLAST of Carg27377 vs. Swiss-Prot
Match: sp|A2RVS6|SR34A_ARATH (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-06
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 15 MSSRNSRTIYVGNLPGDIRLSEVEDLFYKFEDIHDAE 52
          MS R SR+IYVGNLPGDIR  E+ED+FYK+  I D E
Sbjct: 1  MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIE 37

BLAST of Carg27377 vs. Swiss-Prot
Match: sp|Q7SXP4|SRS1A_DANRE (Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04
Identity = 27/60 (45.00%), Postives = 30/60 (50.00%), Query Frame = 0

Query: 19 NSRTIYVGNLPGDIRLSEVEDLFYK----------------------FEDIHDAEDAIYA 57
          N   IYVGNLP DIR  +VED+FYK                      FED  DAEDA+YA
Sbjct: 13 NDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYA 72

BLAST of Carg27377 vs. TrEMBL
Match: tr|A0A287LD50|A0A287LD50_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.8e-11
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 8  LFTTKETMSSRNSRTIYVGNLPGDIRLSEVEDLFYKFEDIHDAEDAIY 56
          +F T ETM  RNS TIYVGNLPGDIR  EVEDLFYKFED  DA+DAIY
Sbjct: 4  IFFTAETMGRRNSCTIYVGNLPGDIREREVEDLFYKFEDPRDADDAIY 51

BLAST of Carg27377 vs. TrEMBL
Match: tr|B9EVT5|B9EVT5_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_01505 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 7   LLFTTKETMSSRNSRTIYVGNLPGDIRLSEVEDLFYKFEDIHDAEDAI 55
           L  +  ETMS RNSRTIYVGNLPGDIR  EVEDLFYKFED  DA+DAI
Sbjct: 64  LSLSPSETMSRRNSRTIYVGNLPGDIREREVEDLFYKFEDPRDADDAI 111

BLAST of Carg27377 vs. TrEMBL
Match: tr|A0A0E0MVF7|A0A0E0MVF7_ORYRU (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 13  ETMSSRNSRTIYVGNLPGDIRLSEVEDLFYKFEDIHDAEDAI 55
           ETMS RNSRTIYVGNLPGDIR  EVEDLFYKFED  DA+DAI
Sbjct: 84  ETMSRRNSRTIYVGNLPGDIREREVEDLFYKFEDPRDADDAI 125

BLAST of Carg27377 vs. TrEMBL
Match: tr|I1NMK5|I1NMK5_ORYGL (Uncharacterized protein OS=Oryza glaberrima OX=4538 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 13  ETMSSRNSRTIYVGNLPGDIRLSEVEDLFYKFEDIHDAEDAI 55
           ETMS RNSRTIYVGNLPGDIR  EVEDLFYKFED  DA+DAI
Sbjct: 128 ETMSRRNSRTIYVGNLPGDIREREVEDLFYKFEDPRDADDAI 169

BLAST of Carg27377 vs. TrEMBL
Match: tr|A0A1S3BPM4|A0A1S3BPM4_CUCME (serine/arginine-rich splicing factor SR30 OS=Cucumis melo OX=3656 GN=LOC103492152 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.9e-09
Identity = 38/63 (60.32%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 15 MSSRNSRTIYVGNLPGDIRLSEVEDLFYK----------------------FEDIHDAED 56
          MSSRNSRTIYVGNLPGDIRL EVEDLFYK                      FED+ DAED
Sbjct: 1  MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022961397.14.1e-1465.33serine/arginine-rich splicing factor SR30-like [Cucurbita moschata][more]
EEE54434.12.1e-1077.08hypothetical protein OsJ_01505 [Oryza sativa Japonica Group][more]
XP_022135868.11.1e-0860.32serine/arginine-rich splicing factor SR30 isoform X3 [Momordica charantia][more]
XP_022135865.11.1e-0860.32serine/arginine-rich splicing factor SR30 isoform X1 [Momordica charantia] >XP_0... [more]
XP_022135867.11.1e-0860.32serine/arginine-rich splicing factor SR30 isoform X2 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT1G09140.19.7e-1041.58SERINE-ARGININE PROTEIN 30[more]
AT4G02430.24.8e-0953.97RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G02840.12.4e-0850.79RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G49430.11.2e-0767.57SER/ARG-rich protein 34A[more]
Match NameE-valueIdentityDescription
sp|Q9XFR5|SR30_ARATH1.7e-0841.58Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
sp|F4JHI7|SR34B_ARATH8.6e-0853.97Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
sp|O22315|SR34_ARATH4.3e-0750.79Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
sp|A2RVS6|SR34A_ARATH2.1e-0667.57Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
sp|Q7SXP4|SRS1A_DANRE2.0e-0445.00Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV... [more]
Match NameE-valueIdentityDescription
tr|A0A287LD50|A0A287LD50_HORVV4.8e-1177.08Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
tr|B9EVT5|B9EVT5_ORYSJ1.4e-1077.08Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_01505 PE... [more]
tr|A0A0E0MVF7|A0A0E0MVF7_ORYRU1.8e-1085.71Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1[more]
tr|I1NMK5|I1NMK5_ORYGL1.8e-1085.71Uncharacterized protein OS=Oryza glaberrima OX=4538 PE=4 SV=1[more]
tr|A0A1S3BPM4|A0A1S3BPM4_CUCME9.9e-0960.32serine/arginine-rich splicing factor SR30 OS=Cucumis melo OX=3656 GN=LOC10349215... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27377-RACarg27377-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 10..64
e-value: 5.1E-6
score: 28.5
NoneNo IPR availablePANTHERPTHR43933:SF1SUBFAMILY NOT NAMEDcoord: 15..50
NoneNo IPR availablePANTHERPTHR43933FAMILY NOT NAMEDcoord: 15..50
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 15..51

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27377Cla97C03G067680Watermelon (97103) v2carwmbB0122
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg27377Cucurbita moschata (Rifu)carcmoB0162
Carg27377Cucurbita maxima (Rimu)carcmaB0153
Carg27377Watermelon (97103) v1carwmB0116