Carg27377 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGCAGGTAAAGACTTGTCTTAGCCTTTTATACAACCTCAATCCGATATGTCGTAGGTAAAGACGGATTTAATCTCCTTTTTGTCCTCCATAAAATTGTTATTAATTATTTATACTTTATGAAAGCTTTGGACACGTGGCGTAGTGAAATTACCTTTTGACAGAGGTCGGAAGTTCTACATGGGAGGGTAAAAGAGTCAAGAGTGGTTAAGGCACAAGATTCTAGTCTAGCCCAGCTTCAGCCACTATATAATACCCTGTTTTCCCATTCTCGATTTTTTTCATGAACTCAGAAATCTTCAAGAATCATCTCCTCTGTTTTCTCTCTAGCCTTAAAATCAACAGGTATCAATTGTTCTCCTTCAATTTGTAGTTTTCACTTTCGAATTTTTGTTTTCAGTTCTTGACAGAAGAATGAAGATTTCGTCATTTCGCGTGTTGATTCTCTTTTTCATTTCGATTTTTGTGTTAATTTTGATAGCATGGTGATGATCGATGACTGCGATTATGCCTCCATAGGTTATTCTTCTCTATCACTATTTTAATCTATACGCTGCTCTTTCTACTGTGTGATGCAATTTCTGTTGCCATTTATTGTTATCCTTTTCAAGATTTTGTACTTACTGTTCACGACGAAGGAGACGATGAGTAGCAGAAATAGTCGCACTATCTATGTTGGAAATCTTCCTGGAGATATTCGTTTGAGTGAAGTAGAAGATCTATTTTACAAGGTTTGATATCCTCGAATGCATACTTGTTTTGGTGAAATTTTTGTTTTAAAGTATTCGAGTCTGTGGATGGAACATTTTCATCTGAGTCCCTAAAAATGTTTTTTGTTATCATTTTGGGTGTGGTATTCAAAGGATCCAAGTAGTTGCACTGAGCTGTTGGTGATCCTTATGTAAAACTTTTATTGTCTTCATCAGTTTGAAGATATTCATGATGCTGAAGACGCGATTTACGGTCATGATGGATATAAGTTCAACGGATGTTGATTACAGGTACTAGTCGCAATGCATGCTTGCTGATATTATTCCTCTATGATGTTTTATCCTCGTATGGAATTGTGAGATCCCACATTGGTTGTAGAGGAGAACGAAACATGTTTTTATAAGGGGTGGAAACCTGTCCTAGCAGATACATTTTAAAAACCTTGAGGGGAAGTCCGAAAGGGAAAGCCCAAAGAGGACAATATGATTAGCGGTGAGCTTGCAGATTAGAAAACTTGATTCATTTGAATGGGTAACAGTCTCTGTTTTGGGTTTTGCGTTCCTATCTTAATGCATTTGCCTGGTGCTTTGGTTCTATTCTTTATGAAATGGATGATGTCAAGTCTAGGCTTGTGTTGTTCCCATTGATGAAGATGTGGAGAACTTGGCTTCAATACCCCGACAACCTCGATGCCGATATTCTTTCCTTATTCATGATTTCCCAATTGTTGCTAACACTTGTGGAAAAGCTTGTTGAGTTGTACTGTCGTAATCTCGTGCAGTCGGTCGAGAATTATTTTCTCCGAAACATGCTGTTCTATAGTACCTAAAACTTTTTTGCACATTAATTCTACGTTAGTATGTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATACGCGTTTTAAGAACCTTGAGGAGAAGCCTGAAAGGGAAAGTTCAAATAAGACAATATCTGCTAGTGTGTTCTTCCCTCTCCCCCTGTCTTGCCACTGACTGTTCATCCGCTTGGATTCTATATTTCTAGTCAACTGTTGATGACATAGGAGGAAGAGTTGAGAATATGCCTTCGTTGTCGAATGTGGATCGCCATCATTTCGACTTTTGGCTATAGACCCAGAATTTCCTAGATACTCGATATCGTTTATCTCTTTTTCCCAGGTCGAGATCAACGTCGAGATCAAGATCAGGATCGCCAGTTTCATATATAGCCCTCCCCTTTCTTTGGATTGTCTTAGGGACTTCTATTCTGTTTCTCATTGTTTCATTGATTGCAGCGTCGACAAACCTCCGAGTCGGAGCAGATCTCGGTCCAAGTACAGAAACATATCCAGATCCCTTTCACCTAATGTAAGATCCTGATTCAGACTTGCATATTTCTTAGAACAAAGATAACAGTATGTCCAGACTTGGTTTCTTTTAAGACGTAATAACGAATATGAACTCCGACTTAAGCAGGTGAGCCCAGTTCGAAGCTATAGCCGATCGGTTGATTCCAGGTACTGATATTCAGAATAGAACATTGTTGTTGTGATGGTTCTTGGATAGGATAATAAAGGTTAGGAGAAAAGTCTTTGATGATGTTTATGTTTATAATTTGAGATGAGATAATTCACTGTCTTCATTGGGGCTGTTATTCTCTTGTCTTCTAAATCTTATAGATGTACTTTTCTGTCTTTTCGCGTTTTTATTTCCCCTAATAATTTCTCGAGAGGTCGAGATGCAATATTACTTCAGG ATGTCGCAGATTTTGTACTTACTGTTCACGACGAAGGAGACGATGAGTAGCAGAAATAGTCGCACTATCTATGTTGGAAATCTTCCTGGAGATATTCGTTTGAGTGAAGTAGAAGATCTATTTTACAAGTTTGAAGATATTCATGATGCTGAAGACGCGATTTACGCGTCGACAAACCTCCGAGTCGGAGCAGATCTCGGTCCAAGTACAGAAACATATCCAGATCCCTTTCACCTAATCAGGTGAGCCCAGTTCGAAGCTATAGCCGATCGGTTGATTCCAGGTACTGATATTCAGAATAGAACATTGTTGTTGTGATGGTTCTTGGATAGGATAATAAAGGTTAGGAGAAAAGTCTTTGATGATGTTTATGTTTATAATTTGAGATGAGATAATTCACTGTCTTCATTGGGGCTGTTATTCTCTTGTCTTCTAAATCTTATAGATGTACTTTTCTGTCTTTTCGCGTTTTTATTTCCCCTAATAATTTCTCGAGAGGTCGAGATGCAATATTACTTCAGG ATGTCGCAGATTTTGTACTTACTGTTCACGACGAAGGAGACGATGAGTAGCAGAAATAGTCGCACTATCTATGTTGGAAATCTTCCTGGAGATATTCGTTTGAGTGAAGTAGAAGATCTATTTTACAAGTTTGAAGATATTCATGATGCTGAAGACGCGATTTACGCGTCGACAAACCTCCGAGTCGGAGCAGATCTCGGTCCAAGTACAGAAACATATCCAGATCCCTTTCACCTAATCAGGTGA MSQILYLLFTTKETMSSRNSRTIYVGNLPGDIRLSEVEDLFYKFEDIHDAEDAIYASTNLRVGADLGPSTETYPDPFHLIR
BLAST of Carg27377 vs. NCBI nr
Match: XP_022961397.1 (serine/arginine-rich splicing factor SR30-like [Cucurbita moschata]) HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14 Identity = 49/75 (65.33%), Postives = 51/75 (68.00%), Query Frame = 0
BLAST of Carg27377 vs. NCBI nr
Match: EEE54434.1 (hypothetical protein OsJ_01505 [Oryza sativa Japonica Group]) HSP 1 Score: 74.3 bits (181), Expect = 2.1e-10 Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 0
BLAST of Carg27377 vs. NCBI nr
Match: XP_022135868.1 (serine/arginine-rich splicing factor SR30 isoform X3 [Momordica charantia]) HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08 Identity = 38/63 (60.32%), Postives = 39/63 (61.90%), Query Frame = 0
BLAST of Carg27377 vs. NCBI nr
Match: XP_022135865.1 (serine/arginine-rich splicing factor SR30 isoform X1 [Momordica charantia] >XP_022135866.1 serine/arginine-rich splicing factor SR30 isoform X1 [Momordica charantia]) HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08 Identity = 38/63 (60.32%), Postives = 39/63 (61.90%), Query Frame = 0
BLAST of Carg27377 vs. NCBI nr
Match: XP_022135867.1 (serine/arginine-rich splicing factor SR30 isoform X2 [Momordica charantia]) HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08 Identity = 38/63 (60.32%), Postives = 39/63 (61.90%), Query Frame = 0
BLAST of Carg27377 vs. TAIR10
Match: AT1G09140.1 (SERINE-ARGININE PROTEIN 30) HSP 1 Score: 59.7 bits (143), Expect = 9.7e-10 Identity = 42/101 (41.58%), Postives = 46/101 (45.54%), Query Frame = 0
BLAST of Carg27377 vs. TAIR10
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 57.4 bits (137), Expect = 4.8e-09 Identity = 34/63 (53.97%), Postives = 36/63 (57.14%), Query Frame = 0
BLAST of Carg27377 vs. TAIR10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 55.1 bits (131), Expect = 2.4e-08 Identity = 32/63 (50.79%), Postives = 36/63 (57.14%), Query Frame = 0
BLAST of Carg27377 vs. TAIR10
Match: AT3G49430.1 (SER/ARG-rich protein 34A) HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07 Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0
BLAST of Carg27377 vs. Swiss-Prot
Match: sp|Q9XFR5|SR30_ARATH (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 1.7e-08 Identity = 42/101 (41.58%), Postives = 46/101 (45.54%), Query Frame = 0
BLAST of Carg27377 vs. Swiss-Prot
Match: sp|F4JHI7|SR34B_ARATH (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 8.6e-08 Identity = 34/63 (53.97%), Postives = 36/63 (57.14%), Query Frame = 0
BLAST of Carg27377 vs. Swiss-Prot
Match: sp|O22315|SR34_ARATH (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 4.3e-07 Identity = 32/63 (50.79%), Postives = 36/63 (57.14%), Query Frame = 0
BLAST of Carg27377 vs. Swiss-Prot
Match: sp|A2RVS6|SR34A_ARATH (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 2.1e-06 Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0
BLAST of Carg27377 vs. Swiss-Prot
Match: sp|Q7SXP4|SRS1A_DANRE (Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV=2) HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04 Identity = 27/60 (45.00%), Postives = 30/60 (50.00%), Query Frame = 0
BLAST of Carg27377 vs. TrEMBL
Match: tr|A0A287LD50|A0A287LD50_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 4.8e-11 Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 0
BLAST of Carg27377 vs. TrEMBL
Match: tr|B9EVT5|B9EVT5_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_01505 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10 Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 0
BLAST of Carg27377 vs. TrEMBL
Match: tr|A0A0E0MVF7|A0A0E0MVF7_ORYRU (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10 Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0
BLAST of Carg27377 vs. TrEMBL
Match: tr|I1NMK5|I1NMK5_ORYGL (Uncharacterized protein OS=Oryza glaberrima OX=4538 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10 Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0
BLAST of Carg27377 vs. TrEMBL
Match: tr|A0A1S3BPM4|A0A1S3BPM4_CUCME (serine/arginine-rich splicing factor SR30 OS=Cucumis melo OX=3656 GN=LOC103492152 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 9.9e-09 Identity = 38/63 (60.32%), Postives = 39/63 (61.90%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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