Carg27374 (gene) Silver-seed gourd

Overview
NameCarg27374
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHypoxia-responsive family protein
LocationCucurbita_argyrosperma_scaffold_396 : 27018 .. 28782 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAATCCAAGGGAAAACTCGAATCTCTCAGGGAGTGGGTTTCCGAACACAAGCTTCGCACCGTCGGTAAGTTCAACTCATCAATCCTCTCCTCTATTTCATTTTCCTGATTTCCGATGGATTGATTATGTTTAATCTTCTCATTACTAGCGGAGTTTCGTTTCGGACATAGCTGGAGTAATCAGTCCCCAAGTTAAGCGTATGAAGGATCTCAGCACTTCCAGCGGGATCGGGGGATTCTCTTGTTGCATAGCTCAGGTCGTAGTAACGCGCCACCACGTGAAGGAGTTTCCACGATAGTGATAAGTGCCCTAATTTGCTCTGAAACACCACAAATTCGAAAACATTAGATTTCAATCAACCACCAAAAAATTTGTAACCTATAACAGAGTTCAAAATAGTGAAGTGATGGAGTTTTTCGGTTGAAATCTGTTTAATTCAACTCAAACTGCTTCTGTTAGATCTTGACGAGTCATGAATCTATGAGGATGTTTCTGTAGCCTATTCTAGAGACATCGTTAATTTAAGAATCATCGTGTATCGTCAATAAACAAATTGAAGGTAAAACATATTTGGTTTCTCTTTAACAAACAGCTGATTGATCGTGTTTGTTCTTAAATTTTTGTTCTAGAATTTTGAAAATTATAATTGGAAACTACTTTCTGGAAGCTCTCAATCCTTTTTTCCCTCCTTATTCCTTGTCCTATGATTGTGTTCTTTGTTTTACTGATGAACACCGAACACGCTTAGCTTCTGCCTTGGGTGCTTTTGTGGCCTTGTACTGTCCATGACCTCTAATTGGAGTGCCCAACACAAGCTTTTTTTTGTAAATTGTAACTTCTCATACCATCAGCTTATATTAGAGGGCCTTTATGTAACCACTCAAGGATGCCTTGTCCCGTTGACCCTTGTGCTGTTCGGGCTGTTCGGGTTGTTCGGTGCCTTTTTGGATGAAAGCTGAGGCTTGGTGCTCATAAAAAGTTATTGAGAACACCTTGAACATTTCCATTGAACTTCAAAAGGTCATGTCTAATTATTGAAAATGCAACACGATTTCAATGTAGCTCTTCTAGTTATTTCAGATCGATGTCTATTACATCCATATTTCCTCCTTTATGATCAGGATTAAACATGGATTTAGTGGAAGTTTGACAATTACCATTGAGATTTCGAACATAGACTCGACAAAAATTGAAAGTCGATAAAAGTTCATGAAGGATCGAATATTAGGGATCAAAATGAAAAACTTGACATAAGCCAAATTCATTTGTATCCACTTTTTTTCTTATTGAAAGATCAGCCTTTTGTCTATGTGTTTTCGCATCGAGAATTCTTTGTAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAATAGATCCTTCTACATCTGTATACAAACGCTAGTTTGTCAAGAATATGCAAGAAATGCACTTCGGATTGTTGATTCATTGCCAGAGATGGGTCCTAAAATGCATCTAAGTTATTTTTCATTCTATGTTTTTTCTCGGGTTCATTCGTAAAGTTGGTTAAATCGGAGCTCTTTGTTTAGGGGCAGATGTATAGAAGTTTTTTACATTGGCATTTCTTTTCCATGTGTTAAGTTCTTCAAAATCACTCTCAGGTTACACGCACAGGCTTTGACCTTAGCTGCTCTTGCGGGCGCTGCAGTCGTCGAATATTATGAACACAAATCCGGAGCGAAGGCCGAGCGATATGCCAAGTTCCTTCCCGTTGATAACTACTCACACAAGGACTGA

mRNA sequence

ATGGCTGAATCCAAGGGAAAACTCGAATCTCTCAGGGAGTGGGTTTCCGAACACAAGCTTCGCACCGTCGATCAGCCTTTTGTCTATGTGTTTTCGCATCGAGAATTCTTTGTAGACGAAGAGATGTTACACGCACAGGCTTTGACCTTAGCTGCTCTTGCGGGCGCTGCAGTCGTCGAATATTATGAACACAAATCCGGAGCGAAGGCCGAGCGATATGCCAAGTTCCTTCCCGTTGATAACTACTCACACAAGGACTGA

Coding sequence (CDS)

ATGGCTGAATCCAAGGGAAAACTCGAATCTCTCAGGGAGTGGGTTTCCGAACACAAGCTTCGCACCGTCGATCAGCCTTTTGTCTATGTGTTTTCGCATCGAGAATTCTTTGTAGACGAAGAGATGTTACACGCACAGGCTTTGACCTTAGCTGCTCTTGCGGGCGCTGCAGTCGTCGAATATTATGAACACAAATCCGGAGCGAAGGCCGAGCGATATGCCAAGTTCCTTCCCGTTGATAACTACTCACACAAGGACTGA

Protein sequence

MAESKGKLESLREWVSEHKLRTVDQPFVYVFSHREFFVDEEMLHAQALTLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD
Homology
[Close]
BLAST of Carg27374 vs. NCBI nr
Match: XP_022961523.1 (uncharacterized protein LOC111462074 [Cucurbita moschata] >XP_023515964.1 uncharacterized protein LOC111779972 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-24
Identity = 69/98 (70.41%), Postives = 72/98 (73.47%), Query Frame = 0 

Query: 1  MAESKGKLESLREWVSEHKLRTVDQ--------PFVYVFSHREFFVDEEM----LHAQAL 60
          MAESKGKLESLREWVSEHKLRTV             Y +S        ++    LHAQAL
Sbjct: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 87
          TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 98

[Close]
BLAST of Carg27374 vs. NCBI nr
Match: XP_022145879.1 (uncharacterized protein LOC111015231 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-24
Identity = 68/98 (69.39%), Postives = 72/98 (73.47%), Query Frame = 0 

Query: 1  MAESKGKLESLREWVSEHKLRTVDQ--------PFVYVFSHREFFVDEEM----LHAQAL 60
          MAESKGKLESLREWVSEHKLRTV             Y +S        ++    LHAQAL
Sbjct: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 87
          TLAALAGAAVVEYYEHKSGAKAERYAKFLP+DNYSHKD
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKD 98

[Close]
BLAST of Carg27374 vs. NCBI nr
Match: XP_022924720.1 (uncharacterized protein LOC111432132 [Cucurbita moschata] >XP_022970205.1 uncharacterized protein LOC111469164 [Cucurbita maxima] >XP_023530300.1 uncharacterized protein LOC111792905 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 67/98 (68.37%), Postives = 71/98 (72.45%), Query Frame = 0 

Query: 1  MAESKGKLESLREWVSEHKLRTVDQ--------PFVYVFSHREFFVDEEM----LHAQAL 60
          MAESKGKLESLREWVSEHKLRTV             Y +S        ++    LHAQAL
Sbjct: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 87
          TLAALAGAAVVEYYEHKSGAKAERYAKFLP+DNYS KD
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSRKD 98

[Close]
BLAST of Carg27374 vs. NCBI nr
Match: XP_022968827.1 (uncharacterized protein LOC111467946 [Cucurbita maxima])

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 66/98 (67.35%), Postives = 71/98 (72.45%), Query Frame = 0 

Query: 1  MAESKGKLESLREWVSEHKLRTVDQ--------PFVYVFSHREFFVDEEM----LHAQAL 60
          MAESKGKLESL+EWVSEHKLRTV             Y +S        ++    LHAQAL
Sbjct: 1  MAESKGKLESLKEWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 87
          TLAALAGAAVVEYYEHKSG KAERYAKFLP+DNYSHKD
Sbjct: 61 TLAALAGAAVVEYYEHKSGEKAERYAKFLPIDNYSHKD 98

[Close]
BLAST of Carg27374 vs. NCBI nr
Match: XP_004135606.1 (PREDICTED: uncharacterized protein LOC101204590 [Cucumis sativus] >XP_008450622.1 PREDICTED: uncharacterized protein LOC103492155 [Cucumis melo] >KGN66059.1 hypothetical protein Csa_1G569360 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 6.6e-23
Identity = 65/98 (66.33%), Postives = 71/98 (72.45%), Query Frame = 0 

Query: 1  MAESKGKLESLREWVSEHKLRTVDQ--------PFVYVFSHREFFVDEEM----LHAQAL 60
          MAE KGKLESLR+WVSEHKLRTV             Y +S        ++    LHAQAL
Sbjct: 1  MAEPKGKLESLRDWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 87
          TLAALAGAAVVEYYEHKSGAKAERYAKFLP+DNYSHK+
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKE 98

[Close]
BLAST of Carg27374 vs. TAIR10
Match: AT3G05550.1 (Hypoxia-responsive family protein)

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-17
Identity = 52/98 (53.06%), Postives = 61/98 (62.24%), Query Frame = 0 

Query: 1  MAESKGKLESLREWVSEHKLRTV--------DQPFVYVFSHREFFVDEEM----LHAQAL 60
          M ESK K E +R+WVS+HKLRTV             Y +S        ++    LHAQAL
Sbjct: 1  MVESKTKFEEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 87
          TLAALAGAAVVEYY+HK+ A   RY KFLP +N SHKD
Sbjct: 61 TLAALAGAAVVEYYDHKTEA-TNRYPKFLPPENLSHKD 97

[Close]
BLAST of Carg27374 vs. TAIR10
Match: AT5G27760.1 (Hypoxia-responsive family protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-13
Identity = 47/93 (50.54%), Postives = 54/93 (58.06%), Query Frame = 0 

Query: 1  MAESKGKLESLREWVSEHKLRTV--------DQPFVYVFS----HREFFVDEEMLHAQAL 60
          MAE K K+  +REW+ EHKLRTV             Y +S         +    LHAQAL
Sbjct: 1  MAEPKTKVAEIREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDN 82
          TLAALAGAA VEYY+HKSGA  +R  KFL  DN
Sbjct: 61 TLAALAGAAAVEYYDHKSGA-TDRIPKFLKPDN 92

[Close]
BLAST of Carg27374 vs. TrEMBL
Match: tr|A0A1S3BP02|A0A1S3BP02_CUCME (uncharacterized protein LOC103492155 OS=Cucumis melo OX=3656 GN=LOC103492155 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-23
Identity = 65/98 (66.33%), Postives = 71/98 (72.45%), Query Frame = 0 

Query: 1  MAESKGKLESLREWVSEHKLRTVDQ--------PFVYVFSHREFFVDEEM----LHAQAL 60
          MAE KGKLESLR+WVSEHKLRTV             Y +S        ++    LHAQAL
Sbjct: 1  MAEPKGKLESLRDWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 87
          TLAALAGAAVVEYYEHKSGAKAERYAKFLP+DNYSHK+
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKE 98

[Close]
BLAST of Carg27374 vs. TrEMBL
Match: tr|A0A0A0LYG3|A0A0A0LYG3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569360 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-23
Identity = 65/98 (66.33%), Postives = 71/98 (72.45%), Query Frame = 0 

Query: 1  MAESKGKLESLREWVSEHKLRTVDQ--------PFVYVFSHREFFVDEEM----LHAQAL 60
          MAE KGKLESLR+WVSEHKLRTV             Y +S        ++    LHAQAL
Sbjct: 1  MAEPKGKLESLRDWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 87
          TLAALAGAAVVEYYEHKSGAKAERYAKFLP+DNYSHK+
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKE 98

[Close]
BLAST of Carg27374 vs. TrEMBL
Match: tr|A0A2H5PYK1|A0A2H5PYK1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_179560 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-19
Identity = 57/86 (66.28%), Postives = 63/86 (73.26%), Query Frame = 0 

Query: 1  MAESKGKLESLREWVSEHKLRTVDQPFVYVFSHREFFVDEEMLHAQALTLAALAGAAVVE 60
          MAE K KLES+REWV ++KLRTV       F      V    LHAQALTLAALAGAAVVE
Sbjct: 1  MAEHKSKLESVREWVVQNKLRTV--VVAATFGELNCCVVGASLHAQALTLAALAGAAVVE 60

Query: 61 YYEHKSGAKAERYAKFLPVDNYSHKD 87
          YY+HKSG+K ERYAKFLP D Y+HKD
Sbjct: 61 YYDHKSGSKTERYAKFLPADPYAHKD 84

[Close]
BLAST of Carg27374 vs. TrEMBL
Match: tr|A0A2I4H1K9|A0A2I4H1K9_9ROSI (uncharacterized protein LOC109012704 isoform X1 OS=Juglans regia OX=51240 GN=LOC109012704 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 0 

Query: 1  MAESKGKLESLREWVSEHKLRTVD--------QPFVYVFSHREFFVDEEM----LHAQAL 60
          MAESK K ES+R WV EHKLRTV             Y +S        ++    LHAQAL
Sbjct: 1  MAESKSKAESIRGWVVEHKLRTVGCLWLSGLAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 87
          TLAALAGAAVVE+Y+HK+GAKA+RYAKFLPVD +SHKD
Sbjct: 61 TLAALAGAAVVEWYDHKTGAKADRYAKFLPVDTFSHKD 98

[Close]
BLAST of Carg27374 vs. TrEMBL
Match: tr|A0A2I4GD52|A0A2I4GD52_9ROSI (uncharacterized protein LOC109006845 OS=Juglans regia OX=51240 GN=LOC109006845 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.3e-18
Identity = 60/99 (60.61%), Postives = 67/99 (67.68%), Query Frame = 0 

Query: 1  MAESKGKLESLREWVSEHKLRTVDQ--------PFVYVFSHREFFVDEEM----LHAQAL 60
          MAESKGKLES+REWV EHKLRTV             Y +S        ++    LHAQAL
Sbjct: 1  MAESKGKLESMREWVVEHKLRTVGSLWLSGLAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYS-HKD 87
          TLAALAGAAVVE+Y+HK+ AKAERY KF PVD YS HKD
Sbjct: 61 TLAALAGAAVVEWYDHKTEAKAERYTKFFPVDAYSTHKD 99

The following BLAST results are available for this feature:
BLAST of Carg27374 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961523.12.1e-2470.41uncharacterized protein LOC111462074 [Cucurbita moschata] >XP_023515964.1 unchar... [more]
XP_022145879.12.7e-2469.39uncharacterized protein LOC111015231 [Momordica charantia][more]
XP_022924720.12.3e-2368.37uncharacterized protein LOC111432132 [Cucurbita moschata] >XP_022970205.1 unchar... [more]
XP_022968827.12.3e-2367.35uncharacterized protein LOC111467946 [Cucurbita maxima][more]
XP_004135606.16.6e-2366.33PREDICTED: uncharacterized protein LOC101204590 [Cucumis sativus] >XP_008450622.... [more]
BLAST of Carg27374 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05550.13.9e-1753.06Hypoxia-responsive family protein[more]
AT5G27760.11.2e-1350.54Hypoxia-responsive family protein[more]
BLAST of Carg27374 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg27374 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BP02|A0A1S3BP02_CUCME4.4e-2366.33uncharacterized protein LOC103492155 OS=Cucumis melo OX=3656 GN=LOC103492155 PE=... [more]
tr|A0A0A0LYG3|A0A0A0LYG3_CUCSA4.4e-2366.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569360 PE=4 SV=1[more]
tr|A0A2H5PYK1|A0A2H5PYK1_CITUN1.7e-1966.28Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_179560 PE=4 SV=1[more]
tr|A0A2I4H1K9|A0A2I4H1K9_9ROSI1.5e-1859.18uncharacterized protein LOC109012704 isoform X1 OS=Juglans regia OX=51240 GN=LOC... [more]
tr|A0A2I4GD52|A0A2I4GD52_9ROSI3.3e-1860.61uncharacterized protein LOC109006845 OS=Juglans regia OX=51240 GN=LOC109006845 P... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27374-RACarg27374-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR28018FAMILY NOT NAMEDcoord: 2..85
NoneNo IPR availablePANTHERPTHR28018:SF1SUBFAMILY NOT NAMEDcoord: 2..85

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27374Cla005194Watermelon (97103) v1carwmB0116
Carg27374CmaCh10G011250Cucurbita maxima (Rimu)carcmaB0153
Carg27374CmoCh10G012040Cucurbita moschata (Rifu)carcmoB0162
Carg27374Cla97C03G067710Watermelon (97103) v2carwmbB0122
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None