Carg27339 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAAAACTGAGAAGAGTCTTTAAACCTCTCCTGGGAAGAAGCAGGTCCTCTAGTTTCAGACGTTTAGTTCAAAACGCTTTGGAGCACCTCGAAACCCTAAAGAAGCTTCGCCATGGCCGGTACGTCGAAGATCGAAAGGACGCCGCTCGTCTCCTTCATGAAGGCCTTCCCAAACTAGCCCTCTCTCGCGTACGTCTCTCATCCCCTTTTCGATTAACTTTCAGATCATTCGACATAAATTCTCGATGATGTGCGCAGTGCGAGCAAATGTTTCGACATCAAAATCTAATGGATGCTTATGGCATGATGGAAGGGTATCTAAATCTGTTGAGGGAAAGATTGTACCTCCTTGCACCTGGAAGGTTTGCTACTTTACAATGAATTTTCATAATTAAATTCCTATTTTTTCAAAAGGAAAATTTGAAAATAGTATTGATGTTTACCTAGAGAGTGTCCTAAAGAATTGGAGGAGGCAGTGTCGAGTGTGGTATTTGCAGCTTCAAGATGTGAGGACTTTCCAGAGCTTGAAGAGATTAAATCAGTATTGAGTTCTAGGTTTGGCACAGAGTTTGCTGCTCGTGCTGTTGAATTACGCAACAATAATACTGTAAATCACTCGGTATGTCTCACTTAA ATGAGAAAACTGAGAAGAGTCTTTAAACCTCTCCTGGGAAGAAGCAGGTCCTCTAGTTTCAGACGTTTAGTTCAAAACGCTTTGGAGCACCTCGAAACCCTAAAGAAGCTTCGCCATGGCCGGTACGTCGAAGATCGAAAGGACGCCGCTCGTCTCCTTCATGAAGGCCTTCCCAAACTAGCCCTCTCTCGCTGCGAGCAAATGTTTCGACATCAAAATCTAATGGATGCTTATGGCATGATGGAAGGGTATCTAAATCTGTTGAGGGAAAGATTGTACCTCCTTGCACCTGGAAGAGAGTGTCCTAAAGAATTGGAGGAGGCAGTGTCGAGTGTGGTATTTGCAGCTTCAAGATGTGAGGACTTTCCAGAGCTTGAAGAGATTAAATCAGTATTGAGTTCTAGGTTTGGCACAGAGTTTGCTGCTCGTGCTGTTGAATTACGCAACAATAATACTGTAAATCACTCGGTATGTCTCACTTAA ATGAGAAAACTGAGAAGAGTCTTTAAACCTCTCCTGGGAAGAAGCAGGTCCTCTAGTTTCAGACGTTTAGTTCAAAACGCTTTGGAGCACCTCGAAACCCTAAAGAAGCTTCGCCATGGCCGGTACGTCGAAGATCGAAAGGACGCCGCTCGTCTCCTTCATGAAGGCCTTCCCAAACTAGCCCTCTCTCGCTGCGAGCAAATGTTTCGACATCAAAATCTAATGGATGCTTATGGCATGATGGAAGGGTATCTAAATCTGTTGAGGGAAAGATTGTACCTCCTTGCACCTGGAAGAGAGTGTCCTAAAGAATTGGAGGAGGCAGTGTCGAGTGTGGTATTTGCAGCTTCAAGATGTGAGGACTTTCCAGAGCTTGAAGAGATTAAATCAGTATTGAGTTCTAGGTTTGGCACAGAGTTTGCTGCTCGTGCTGTTGAATTACGCAACAATAATACTGTAAATCACTCGGTATGTCTCACTTAA MRKLRRVFKPLLGRSRSSSFRRLVQNALEHLETLKKLRHGRYVEDRKDAARLLHEGLPKLALSRCEQMFRHQNLMDAYGMMEGYLNLLRERLYLLAPGRECPKELEEAVSSVVFAASRCEDFPELEEIKSVLSSRFGTEFAARAVELRNNNTVNHSVCLT
BLAST of Carg27339 vs. NCBI nr
Match: XP_022963468.1 (uncharacterized protein LOC111463790 [Cucurbita moschata]) HSP 1 Score: 306.6 bits (784), Expect = 4.9e-80 Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0
BLAST of Carg27339 vs. NCBI nr
Match: XP_023538969.1 (uncharacterized protein LOC111799739 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 298.5 bits (763), Expect = 1.3e-77 Identity = 154/159 (96.86%), Postives = 155/159 (97.48%), Query Frame = 0
BLAST of Carg27339 vs. NCBI nr
Match: XP_023522757.1 (uncharacterized protein LOC111786761, partial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 296.2 bits (757), Expect = 6.7e-77 Identity = 153/156 (98.08%), Postives = 153/156 (98.08%), Query Frame = 0
BLAST of Carg27339 vs. NCBI nr
Match: XP_022971780.1 (uncharacterized protein LOC111470458 [Cucurbita maxima]) HSP 1 Score: 292.4 bits (747), Expect = 9.6e-76 Identity = 151/160 (94.38%), Postives = 155/160 (96.88%), Query Frame = 0
BLAST of Carg27339 vs. NCBI nr
Match: XP_022139637.1 (uncharacterized protein LOC111010490 [Momordica charantia]) HSP 1 Score: 190.7 bits (483), Expect = 4.0e-45 Identity = 99/153 (64.71%), Postives = 121/153 (79.08%), Query Frame = 0
BLAST of Carg27339 vs. TAIR10
Match: AT1G13340.1 (Regulator of Vps4 activity in the MVB pathway protein) HSP 1 Score: 110.9 bits (276), Expect = 7.2e-25 Identity = 63/148 (42.57%), Postives = 92/148 (62.16%), Query Frame = 0
BLAST of Carg27339 vs. TAIR10
Match: AT1G34220.1 (Regulator of Vps4 activity in the MVB pathway protein) HSP 1 Score: 86.7 bits (213), Expect = 1.5e-17 Identity = 45/139 (32.37%), Postives = 83/139 (59.71%), Query Frame = 0
BLAST of Carg27339 vs. TAIR10
Match: AT1G25420.1 (Regulator of Vps4 activity in the MVB pathway protein) HSP 1 Score: 86.7 bits (213), Expect = 1.5e-17 Identity = 44/131 (33.59%), Postives = 77/131 (58.78%), Query Frame = 0
BLAST of Carg27339 vs. TAIR10
Match: AT2G19710.1 (Regulator of Vps4 activity in the MVB pathway protein) HSP 1 Score: 78.6 bits (192), Expect = 4.0e-15 Identity = 51/151 (33.77%), Postives = 84/151 (55.63%), Query Frame = 0
BLAST of Carg27339 vs. TAIR10
Match: AT2G14830.1 (Regulator of Vps4 activity in the MVB pathway protein) HSP 1 Score: 78.2 bits (191), Expect = 5.2e-15 Identity = 48/147 (32.65%), Postives = 76/147 (51.70%), Query Frame = 0
BLAST of Carg27339 vs. Swiss-Prot
Match: sp|Q54I39|IST1L_DICDI (IST1-like protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0289029 PE=3 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06 Identity = 30/111 (27.03%), Postives = 65/111 (58.56%), Query Frame = 0
BLAST of Carg27339 vs. Swiss-Prot
Match: sp|Q3ZBV1|IST1_BOVIN (IST1 homolog OS=Bos taurus OX=9913 GN=IST1 PE=2 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 8.8e-04 Identity = 37/120 (30.83%), Postives = 63/120 (52.50%), Query Frame = 0
BLAST of Carg27339 vs. Swiss-Prot
Match: sp|P53990|IST1_HUMAN (IST1 homolog OS=Homo sapiens OX=9606 GN=IST1 PE=1 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 8.8e-04 Identity = 37/120 (30.83%), Postives = 63/120 (52.50%), Query Frame = 0
BLAST of Carg27339 vs. Swiss-Prot
Match: sp|Q9CX00|IST1_MOUSE (IST1 homolog OS=Mus musculus OX=10090 GN=Ist1 PE=1 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 8.8e-04 Identity = 37/120 (30.83%), Postives = 63/120 (52.50%), Query Frame = 0
BLAST of Carg27339 vs. Swiss-Prot
Match: sp|Q568Z6|IST1_RAT (IST1 homolog OS=Rattus norvegicus OX=10116 GN=Ist1 PE=2 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 8.8e-04 Identity = 37/120 (30.83%), Postives = 63/120 (52.50%), Query Frame = 0
BLAST of Carg27339 vs. TrEMBL
Match: tr|A0A1S3BD77|A0A1S3BD77_CUCME (uncharacterized protein LOC103488605 OS=Cucumis melo OX=3656 GN=LOC103488605 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 4.6e-42 Identity = 95/155 (61.29%), Postives = 117/155 (75.48%), Query Frame = 0
BLAST of Carg27339 vs. TrEMBL
Match: tr|A0A0A0K949|A0A0A0K949_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G031970 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40 Identity = 92/155 (59.35%), Postives = 119/155 (76.77%), Query Frame = 0
BLAST of Carg27339 vs. TrEMBL
Match: tr|A0A2P5F9H5|A0A2P5F9H5_9ROSA (Vacuolar protein sorting-associated protein OS=Trema orientalis OX=63057 GN=TorRG33x02_096920 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 2.8e-31 Identity = 78/158 (49.37%), Postives = 105/158 (66.46%), Query Frame = 0
BLAST of Carg27339 vs. TrEMBL
Match: tr|A0A1Q3AUG0|A0A1Q3AUG0_CEPFO (Ist1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_02724 PE=4 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 1.8e-30 Identity = 74/146 (50.68%), Postives = 104/146 (71.23%), Query Frame = 0
BLAST of Carg27339 vs. TrEMBL
Match: tr|A0A2P5CER8|A0A2P5CER8_PARAD (Vacuolar protein sorting-associated protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_159000 PE=4 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30 Identity = 76/158 (48.10%), Postives = 104/158 (65.82%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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