Carg27321 (gene) Silver-seed gourd

Overview
NameCarg27321
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
LocationCucurbita_argyrosperma_scaffold_515 : 40116 .. 42294 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCATAAACCCTAACCCTGCTTTGCAGAAAATTTTTGGAGGAAGATGACGCAGAAAGCAACCCTATTCAAAGGTCAACAGAAGAGGAAAACAATTCCTCCCAATCGCCATGGAAAAATCCCCCAAACTCGTAAAGGTATCTCTCTGTTCTTTTCCCTCCTTCTTATGCTAAATTTACGCGTAAAAATTACGATTTCTCCTCCTCCGTACTCACTGGGCGTTGTCTTTCCAGGGAAAAGAGTTGTGAAGCCATCAAAGACAACTAAAGAGATGGAAACAGATCGGGTATGTGTTATCTTTTCGTGTTTGTCCGGTAATTTATATGGAATCTAGTAACTGTGAGAGTAGAAACTTGTGTTGATAAGTTGTTTTGTTGATGCTTTGTATTTTTAATGTTTCAAATACGAATTTCTTGCTTAATGTTGCATCGCCTTGTTAGTTTGCAATTCGTGTGAACTATTAATCATCCATTGTTTTGGTTAGATGAGAACATTTCTGAATTTTCTTGCCTTCTTATTTCCGAGAATGGATTTTGTGCGTGATTCTTAAGGCCTTTTCTCTTGGCTGAACTTGGTAGTTTCCCAGTTCTTTCAAATTCTACTGTGACATCTCGTAATGTGACTGCAGACTTTTTTGTTTCTACTTCTGCTGCATATATGCATCCATTCACATAATATTGGCCGTGATGAGTATCATCTCTTTGATTATGTTGGTAGCCGTTTGTGAGAAACTTTTCATGGCGAAGGAAAATTTGAAAAGTTTAAGTAAGGGGAAAGGAAGCTTCTCAACTTCACTCTCTAAGAATATGTTTCACCATAAAAAATTTATTTAGAAGCCCATCCAACCAATTATTGTCTACACTGCATCGCTTTGGAAGGATTGGATGAATGCAGAGAAGCAGGTTTCTCCTTTTTTAGGAATGATCTCTTGTGCAAAGATAGGATATCCATTTTTCGTTTGACAGAAAGAAAGTTGAAAAGTTAAGAAGCATTGTGCAAGGCCAAAGAGAGGATAGTTTTGGGTTTGAATAAATCATTCATTTCTAAATTATGAGATATTTGGTTGGTAGACCGAGATTTTATACTGCAGAAATGCTTTTGGGCTTTTGAAAGGAGAGGAGATGAGTAGTATTCTTGATTTGAGCGAAGTCATTTTTGTATATGCCTTTGAAATTTTCTTTGTATGAAATTAGTTTTTTTTCTTTTATCTGGTAATGGGACATTTGGAAAAGTGTCAAGCCTATATTTCCCTTTGCCCTATCTGTCGATGACCATAAGCGAGGGAAACATAGTGGTCATGTTTGTGCTTGCCTTTTGTTTCTCTTGTACCTTTCTTTGTGTAAGGCTCCTCCTTTCAAGAGGAAGTATAAATTTCCTTGAACTAATATTAAATTTCGTAGTATGTGGGAGTAGTTAATTCTTAATAAAGAAAAAGAAAAATCTTGTGCAACTCCTTGGTTGTCACCCCTCTTCAAACTAGTCAATATTAATGGAAGGTTTCGTTTCTTATCATACTAAGTTCTTTTCTGGTAACGGCTCAGGCCCATCGTTAGCATATATTGTCGTCTTTGGACTTTCCCATTCGGGCTTCCCCTCAAGGCTTTAAAACACGTCTTCTAGGGAAAGGTTTCTACACTCTTATAAATGTGTATTTCATTCTCCTCCCCAACCAACGTGGGATATCTAATTTCCTATTTTAAAGTTGAGACTAGTATAGAATGGCTATAATGTTTGGGTGTATTCTTCTTCCTTGAAATGCTTTTTTGTTGGAAATCTATAGAATGTGCCGATAATTGTTCGCGTATCGTAGTGGAATCACAAGCTTTAGATTACTTTTGCCGTTATATGTGGAGAATTTACGTAGTTCTATGAAAAAAAAAAAAACAGGAATTGAGCAAGTTCATCAATTACTGCAACGAGACGAAGGCTGCTACATTAGCAAACAAGGAAGGTGGGCAGCTGAGTATTGTGAAAACGCCGTCGGATGCTGCTGGTAATAGTAATAATGCAGCAAAGAAGTAAAGGAGGAGGATTTAGATTTTTGTGAGAATAGTGTGAAATTATTTGTGATGTTATTTCTTTCCCTTTTATTTTTCCATCTATGTCTTCTAACGCTTTTCTCAATTTTGTCGGCAGTAATCGGTTACTAATATATATATAAATTTGTTTCTACTTTTGT

mRNA sequence

ATCTCATAAACCCTAACCCTGCTTTGCAGAAAATTTTTGGAGGAAGATGACGCAGAAAGCAACCCTATTCAAAGGTCAACAGAAGAGGAAAACAATTCCTCCCAATCGCCATGGAAAAATCCCCCAAACTCGTAAAGGGAAAAGAGTTGTGAAGCCATCAAAGACAACTAAAGAGATGGAAACAGATCGGGAATTGAGCAAGTTCATCAATTACTGCAACGAGACGAAGGCTGCTACATTAGCAAACAAGGAAGGTGGGCAGCTGAGTATTGTGAAAACGCCGTCGGATGCTGCTGGTAATAGTAATAATGCAGCAAAGAAGTAAAGGAGGAGGATTTAGATTTTTGTGAGAATAGTGTGAAATTATTTGTGATGTTATTTCTTTCCCTTTTATTTTTCCATCTATGTCTTCTAACGCTTTTCTCAATTTTGTCGGCAGTAATCGGTTACTAATATATATATAAATTTGTTTCTACTTTTGT

Coding sequence (CDS)

ATGACGCAGAAAGCAACCCTATTCAAAGGTCAACAGAAGAGGAAAACAATTCCTCCCAATCGCCATGGAAAAATCCCCCAAACTCGTAAAGGGAAAAGAGTTGTGAAGCCATCAAAGACAACTAAAGAGATGGAAACAGATCGGGAATTGAGCAAGTTCATCAATTACTGCAACGAGACGAAGGCTGCTACATTAGCAAACAAGGAAGGTGGGCAGCTGAGTATTGTGAAAACGCCGTCGGATGCTGCTGGTAATAGTAATAATGCAGCAAAGAAGTAA

Protein sequence

MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNETKAATLANKEGGQLSIVKTPSDAAGNSNNAAKK
Homology
[Close]
BLAST of Carg27321 vs. NCBI nr
Match: XP_022953341.1 (uncharacterized protein LOC111455923 [Cucurbita moschata] >XP_022991947.1 uncharacterized protein LOC111488438 [Cucurbita maxima] >XP_023547630.1 uncharacterized protein LOC111806515 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.2 bits (448), Expect = 2.6e-41
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET
Sbjct: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK
Sbjct: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 92

[Close]
BLAST of Carg27321 vs. NCBI nr
Match: XP_008461352.1 (PREDICTED: uncharacterized protein LOC103499958 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 2.0e-33
Identity = 80/92 (86.96%), Postives = 85/92 (92.39%), Query Frame = 0 

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKG+QKRKTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANLFKGKQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAATLANKEGGQLSIVKTP++A    N+ AKK
Sbjct: 61 KAATLANKEGGQLSIVKTPANA---DNSNAKK 89

[Close]
BLAST of Carg27321 vs. NCBI nr
Match: XP_004135948.1 (PREDICTED: uncharacterized protein LOC101210742 [Cucumis sativus] >KGN45093.1 hypothetical protein Csa_7G420860 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 9.9e-33
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 0 

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKG+QK KTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANLFKGKQKTKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAATLANKEGGQLSIVKTP++A    N+ AKK
Sbjct: 61 KAATLANKEGGQLSIVKTPANA---DNSNAKK 89

[Close]
BLAST of Carg27321 vs. NCBI nr
Match: XP_022145051.1 (uncharacterized protein LOC111014568 [Momordica charantia])

HSP 1 Score: 148.7 bits (374), Expect = 9.9e-33
Identity = 79/92 (85.87%), Postives = 82/92 (89.13%), Query Frame = 0 

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA  FKGQQKRKTIPPNRHGK+PQTRKGKR VKPSK TKEMETDRELSKFINYCNET
Sbjct: 1  MTQKANQFKGQQKRKTIPPNRHGKVPQTRKGKRFVKPSKITKEMETDRELSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAATLANKEGGQLSIVK P DA    N++AKK
Sbjct: 61 KAATLANKEGGQLSIVKAPLDA---GNSSAKK 89

[Close]
BLAST of Carg27321 vs. NCBI nr
Match: XP_021625749.1 (uncharacterized protein LOC110624762 [Manihot esculenta] >OAY39943.1 hypothetical protein MANES_10G136200 [Manihot esculenta])

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 0 

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQK TLFKGQQK+KTIPPNRHGK+P TRKGKR VKPSKTTKEM+ DREL+KFIN CNE 
Sbjct: 1  MTQKDTLFKGQQKKKTIPPNRHGKVPVTRKGKRFVKPSKTTKEMDVDRELTKFINQCNEV 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAAT+ANKEGGQLSIVK P +    ++ AAKK
Sbjct: 61 KAATIANKEGGQLSIVKAPPE----TSKAAKK 88

[Close]
BLAST of Carg27321 vs. TAIR10
Match: AT3G52040.1 (unknown protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25
Identity = 60/89 (67.42%), Postives = 69/89 (77.53%), Query Frame = 0 

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQK+  FKGQQKRKTI PNRHGK  QTRKGKR VKP+K TKEM+TDREL+KFIN+CNE 
Sbjct: 1  MTQKSNQFKGQQKRKTIAPNRHGKSIQTRKGKRNVKPTKMTKEMDTDRELTKFINHCNEV 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNA 90
          KA   A KEGGQL+I+K  S    +  +A
Sbjct: 61 KATNAACKEGGQLNIIKAESQPEPSKKSA 89

[Close]
BLAST of Carg27321 vs. TrEMBL
Match: tr|A0A1S3CE62|A0A1S3CE62_CUCME (uncharacterized protein LOC103499958 OS=Cucumis melo OX=3656 GN=LOC103499958 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-33
Identity = 80/92 (86.96%), Postives = 85/92 (92.39%), Query Frame = 0 

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKG+QKRKTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANLFKGKQKRKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAATLANKEGGQLSIVKTP++A    N+ AKK
Sbjct: 61 KAATLANKEGGQLSIVKTPANA---DNSNAKK 89

[Close]
BLAST of Carg27321 vs. TrEMBL
Match: tr|A0A0A0K6H9|A0A0A0K6H9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420860 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.6e-33
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 0 

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKG+QK KTIPPNRHGKIPQTRKGKR VKPSKTTKEMETDRE+SKFINYCNET
Sbjct: 1  MTQKANLFKGKQKTKTIPPNRHGKIPQTRKGKRFVKPSKTTKEMETDREVSKFINYCNET 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAATLANKEGGQLSIVKTP++A    N+ AKK
Sbjct: 61 KAATLANKEGGQLSIVKTPANA---DNSNAKK 89

[Close]
BLAST of Carg27321 vs. TrEMBL
Match: tr|A0A2C9V5Z4|A0A2C9V5Z4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G136200 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.5e-29
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 0 

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQK TLFKGQQK+KTIPPNRHGK+P TRKGKR VKPSKTTKEM+ DREL+KFIN CNE 
Sbjct: 1  MTQKDTLFKGQQKKKTIPPNRHGKVPVTRKGKRFVKPSKTTKEMDVDRELTKFINQCNEV 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGNSNNAAKK 93
          KAAT+ANKEGGQLSIVK P +    ++ AAKK
Sbjct: 61 KAATIANKEGGQLSIVKAPPE----TSKAAKK 88

[Close]
BLAST of Carg27321 vs. TrEMBL
Match: tr|A0A2P5SM86|A0A2P5SM86_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA25894 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.8e-28
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 0 

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQK  LFKGQ+K+KTIPPNRHGK+P  RKGKRVVKPSK TKEM+ DREL+KFIN+CNE 
Sbjct: 1  MTQKGNLFKGQKKQKTIPPNRHGKVPHIRKGKRVVKPSKMTKEMDADRELTKFINHCNEI 60

Query: 61 KAATLANKEGGQLSIVKTPSDAAGN 86
          KAAT+ANK+GGQLSIVK P +++GN
Sbjct: 61 KAATVANKDGGQLSIVKPPPESSGN 85

[Close]
BLAST of Carg27321 vs. TrEMBL
Match: tr|A0A103Y1I3|A0A103Y1I3_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_020940 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.8e-28
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 1  MTQKATLFKGQQKRKTIPPNRHGKIPQTRKGKRVVKPSKTTKEMETDRELSKFINYCNET 60
          MTQKA LFKGQQKRKT+PP+RHGK P+TRKGKRVVKP+K T+EM+TDRELSKFINYCNE 
Sbjct: 1  MTQKANLFKGQQKRKTVPPSRHGKTPKTRKGKRVVKPAKVTQEMDTDRELSKFINYCNEV 60

Query: 61 KAATLANKEGGQLSIVK 78
          KAAT ANKEGGQLSIVK
Sbjct: 61 KAATAANKEGGQLSIVK 77

The following BLAST results are available for this feature:
BLAST of Carg27321 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022953341.12.6e-41100.00uncharacterized protein LOC111455923 [Cucurbita moschata] >XP_022991947.1 unchar... [more]
XP_008461352.12.0e-3386.96PREDICTED: uncharacterized protein LOC103499958 [Cucumis melo][more]
XP_004135948.19.9e-3385.87PREDICTED: uncharacterized protein LOC101210742 [Cucumis sativus] >KGN45093.1 hy... [more]
XP_022145051.19.9e-3385.87uncharacterized protein LOC111014568 [Momordica charantia][more]
XP_021625749.11.1e-2877.17uncharacterized protein LOC110624762 [Manihot esculenta] >OAY39943.1 hypothetica... [more]
BLAST of Carg27321 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52040.11.1e-2567.42unknown protein[more]
BLAST of Carg27321 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg27321 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CE62|A0A1S3CE62_CUCME1.3e-3386.96uncharacterized protein LOC103499958 OS=Cucumis melo OX=3656 GN=LOC103499958 PE=... [more]
tr|A0A0A0K6H9|A0A0A0K6H9_CUCSA6.6e-3385.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420860 PE=4 SV=1[more]
tr|A0A2C9V5Z4|A0A2C9V5Z4_MANES7.5e-2977.17Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G136200 PE=4 SV=... [more]
tr|A0A2P5SM86|A0A2P5SM86_GOSBA2.8e-2876.47Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA25894 PE=4 SV... [more]
tr|A0A103Y1I3|A0A103Y1I3_CYNCS2.8e-2885.71Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_020... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019034UPF0390
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27321-RACarg27321-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019034Uncharacterised protein family UPF0390PFAMPF09495DUF2462coord: 1..79
e-value: 2.8E-8
score: 34.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availablePANTHERPTHR36769FAMILY NOT NAMEDcoord: 1..87

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27321Csa7G420860Cucumber (Chinese Long) v2carcuB0884
Carg27321MELO3C023583Melon (DHL92) v3.5.1carmeB0858
Carg27321CSPI07G18900Wild cucumber (PI 183967)carcpiB0904
Carg27321Cucsa.128180Cucumber (Gy14) v1carcgyB0991
Carg27321Lsi02G025440Bottle gourd (USVL1VR-Ls)carlsiB789
Carg27321CsGy7G017320Cucumber (Gy14) v2carcgybB0858
Carg27321MELO3C023583.2Melon (DHL92) v3.6.1carmedB0868
Carg27321CsaV3_7G030730Cucumber (Chinese Long) v3carcucB0908
Carg27321Bhi09G000588Wax gourdcarwgoB1015
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None