Carg27320 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27320
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L1
Location	Cucurbita_argyrosperma_scaffold_515 : 35180 .. 38996 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGATGACTGCGCGAAACATCCAATACAGAGCCTCTCTTATCTCTTCCATTTCTTTGTTGATAGACTCCCAGAAACCTCTTCTTCTTCTTTGATCGACGGACTGAGCTCTTTCTTCCTCCATGGCAATGGCCGGTTATAGCCCCACTGTGCCCTCACCCCTTGCCATGGCCCGCACTTCTTCAGTGCATCCTCTGGACCTTTCTTCCCTTTTCGCCGTCAGGCCGATTGCTGCCTCTTCCACCACCCACATCTTCTCTTTATGCCACCCCTTAACTCTGCAGCGCAGGGGAGGGAGGTCTATCAATTGGGTCGACCTTAATTTTAGAAGAGAATCTAGGGTTCATTTGGTTGTGGCTGCTTTAGCTGCGGAAATTGAAGTGGCTGAGGTTGTGGATGAGAATGGAGAGGAGAATGATGGATTAGCTGCTTCAATTGCGCCCAAGATTAAGAGGGGAAAGGCTGCATTGCCTCTTAAGAGGGACAGGGTAAGCTTGAGCTACGTTCATGTATTTGGCTGTTTTTAATCTCGTTGACTGCCTTTTTGGATATGGTTTTGGTGTTTGTTTGGCTGTAAAAAGTTTTGTACATGCGTTCTTAGTTTGTTATTCCTCTGTTCATTGATTCTTTACTTTCTACTGTTACCATAAGGCTTATGTAAGTAGTGGAATGTTCATTTTTGTTCAACCTCTGGTTAAAATCTCTGTTGGATTGTTTGTTCTTTCTAGTTTCATGAACTTCTAGAAGTGATTGTTCCTATCATGTCTGTTTCCAATTATGGCTTCATTAGTTGACTGCGAGCCATTTGAGGTGGAAAGAAAACTCTAGCAATTGGGCGGTCTAGTTCTGTTTCTTTATTTTGTTCTTTGTAGCATCGGCTCTTATTTTCTTCGAAGTTCTATTATGTGAGATCCCTCGTCGATTGAAGAGAAGAACGAGTGCTAACAAGGACACTGGGCCCCGAAATGGAGTGTATGGTGAGACCCCACATCGATTGGAGAGAGGGACGAGTGCCATCGTGGATGCTAGGCCTCAAAGAGGGGTGGATTGTGAGACCCCACATCAGTTGGGCCCCGAAAGAGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAATGAAGCATTCTTTATAAGGGTGTTGAAACCTTTCACTAGCAGACACGTTTTAAAAACCTTGAGGAAAAGCCCGGAAGGGAAAACCTAAAGAGGACAATATTGCTAGCGGTGGGTTTGGGCCATTACATATTTTGAACCCGACCCGACCGTATATTTAAAAAGAGGTCCATAAATGATGTGTGCATTACTTTAGTACATATTGTAAGCTTTGTTCTTTCAAAATATGTATTTTCCACCTTCTCTTATCACTGTTGCATCAGCTTTAACATGAAATTGTGTTCTGAAAACATGCAGACCAGATCAAAGAGGTTCCTGGAAATTCAAAAATTGAGGGAAAGTAAAAAGGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAACGTCTAAGACGAAATTCGTGGAAACCGCCGAAGCCCACTTCCGATTAAACATCGATCCCAAATATAACGATCAACAGCTGAGAGCAACAGTAAGTTTCTTTTGGTTCTACTATATCTATGTCCTAAATCACCAATTTTCACTTTTTACATAGGTAAATCTTCCCAAGGGAACTGGACAGACAGTCAAGGTAGCTGTGCTTACTCAAGGTAATCACTAAATTTAACTTAAACAATATTTTCATTCAACGGTAGAAGTAATCAACGAGTTCTCGTTTCGTTTTTTTTACCTTGTGAAGAATTGTTGTTTCCTTATTGAGAGAGCATTGTGGAAACGATATTAATAGTTTGAAGTAGCTATTGTACGAACACAGGTATTATCGTCTTCAGTGTTTGTGAATCTTATGGTTTGTGGTGGAGAATCCTCGAATTGAAAGGGAGGTTTGCTTGCTTGATTGAAAACGTGTAAGATCCCATATCGGTTAGGGAGGAGAACGAAGCATTCTTTATTAGGGTGTAGAAACTTCTCCTTAGTTGACGCGTTTTAAAAACCTTGACGAGAACCCTGAAAAGGAAAGCCGAAAGAGGACAATATTTGCTAGCAGTGGGCTTGAGCTGTTACAAAACGGCTCTGTTAGTAACTATCATGGGGTTGTTTATATGAATTCCTCTTCATAATTTATGAGCAAATCTCCTACTTTTGTTCTTGATTTAATCTTCATAGTCCTAGGCTAATACTGATAAGTCGGTTTGATGAGACGAACGCTTCGAGCTATGGCTTTCTGAATTCATTTTTCCTTCTAGATATGGATTCTCTCTATCTATTCCCATCGTTCTTGTCATCTATGAATTTCGAGATTCAGCTTATTTTGGTCATATGCTGCGTCGCTTTTTCAACAAAATTTTTCACTCATTTCTTATTATCTTATTGCACTTCGTGAATCATGTAGGTGAAAAATTCGACGAAGCGAAAAACGCAGGAGCTGATTTGGTTGGCGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTTGATAAGCTAATTGCTTCACCAGATATGATGCCCAAGGTACAATTTCTTTACATCTTTTTTCAATCATACACTGTGGTGGCTTTCCAAAAAGTATACGTTCCCATGTAATCTGAAATCGATCACCGAACACATGATTCCAATTTTCTTGTATGCAACTAATAATTTTTCGTTTCATGCTTATACGAAAAGTATTCTTGGCTACTAGCTACGACCGAAATTAAGCTAAGATACGGTGTTGTGTTCATGCCATAGATATATGTGTGAATTGTTTCGGTATACACTTTCGGAGTCGGTGTGGACTTCGAGATATCTTAGTTTTGTGGCAACTATAAACGACCAATTAATCTGTTAACCCCGTCCTCTCTGTTTGCATCAGGTTGCTAGTCTAGGTAAGCTTCTAGGACCTCGAGGACTGATGCCGAACCCAAAAGCTGGCACCGTTACGACAAATATACCTCAGGTATAGGTCAGATTCATCTATCTACACATGTATGCATCACAATTTGAGAATAAAATTGTTCATAATAGCTTTGTCCTGTTTCAGGCTATAGCAGAATTCAAGCAGGGAAAAGTCGAATTCCGAGCGGATAAAACCGGGATTGTTCACTTACCTTTCGGGAAGGCAGACTTTTCGGAAGATGACCTCCTCGTGAACTTGCTTGCTGCAATAGTATGTTCTTTCCTAATCTCGAATTCTCAAAAACTCCATTGGTTTCGAAGAAGTTATTAGTCTTCACCATATTGATGATTCGTTCACATTCATGTAACAGAAATCAGTGAGGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCGCATATATGCTCGTCGATGGGGCCTTCGATTCGATTAAACATAAGGGAAATGCTTGATTACAAGATCCCATCATCAAATGCTTGAAGAATTTTAGTCTACAACTGTAAATGTCTTCTTCTTCAATTTGTTTAATATTAGCCCTCGTGCATACGCCTTTCGAATCGTCTTCAGCGGCCGAAGATTTCGTTAAGATCGTTAACAGAGTTGGTATGGTATCTCAATAAAGAATTTGAAACTTGGAAACTGCATATTCATTTGTTTCTGAACTGATTCAAAAGTAGCTCAGAATCAATCATTTTCACCTCATCTGATTATTGTTTATTTCTCAATTTTTTAGTTTATGTTAGTTTTTTGTTATGGAAAAATATGGTTATAGCTTTTTTTTTGTTATGTTTAGTTCATGTCAATTGGATAAAAGTTCAAAATGCGTGCAAAATGCAAGCGGAA

mRNA sequence

TATTGATGACTGCGCGAAACATCCAATACAGAGCCTCTCTTATCTCTTCCATTTCTTTGTTGATAGACTCCCAGAAACCTCTTCTTCTTCTTTGATCGACGGACTGAGCTCTTTCTTCCTCCATGGCAATGGCCGGTTATAGCCCCACTGTGCCCTCACCCCTTGCCATGGCCCGCACTTCTTCAGTGCATCCTCTGGACCTTTCTTCCCTTTTCGCCGTCAGGCCGATTGCTGCCTCTTCCACCACCCACATCTTCTCTTTATGCCACCCCTTAACTCTGCAGCGCAGGGGAGGGAGGTCTATCAATTGGGTCGACCTTAATTTTAGAAGAGAATCTAGGGTTCATTTGGTTGTGGCTGCTTTAGCTGCGGAAATTGAAGTGGCTGAGGTTGTGGATGAGAATGGAGAGGAGAATGATGGATTAGCTGCTTCAATTGCGCCCAAGATTAAGAGGGGAAAGGCTGCATTGCCTCTTAAGAGGGACAGGACCAGATCAAAGAGGTTCCTGGAAATTCAAAAATTGAGGGAAAGTAAAAAGGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAACGTCTAAGACGAAATTCGTGGAAACCGCCGAAGCCCACTTCCGATTAAACATCGATCCCAAATATAACGATCAACAGCTGAGAGCAACAGTAAATCTTCCCAAGGGAACTGGACAGACAGTCAAGGTAGCTGTGCTTACTCAAGGTGAAAAATTCGACGAAGCGAAAAACGCAGGAGCTGATTTGGTTGGCGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTTGATAAGCTAATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGTCTAGGTAAGCTTCTAGGACCTCGAGGACTGATGCCGAACCCAAAAGCTGGCACCGTTACGACAAATATACCTCAGGCTATAGCAGAATTCAAGCAGGGAAAAGTCGAATTCCGAGCGGATAAAACCGGGATTGTTCACTTACCTTTCGGGAAGGCAGACTTTTCGGAAGATGACCTCCTCGTGAACTTGCTTGCTGCAATAGTATAAATCAGTGAGGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCGCATATATGCTCGTCGATGGGGCCTTCGATTCGATTAAACATAAGGGAAATGCTTGATTACAAGATCCCATCATCAAATGCTTGAAGAATTTTAGTCTACAACTGTAAATGTCTTCTTCTTCAATTTGTTTAATATTAGCCCTCGTGCATACGCCTTTCGAATCGTCTTCAGCGGCCGAAGATTTCGTTAAGATCGTTAACAGAGTTGGTATGGTATCTCAATAAAGAATTTGAAACTTGGAAACTGCATATTCATTTGTTTCTGAACTGATTCAAAAGTAGCTCAGAATCAATCATTTTCACCTCATCTGATTATTGTTTATTTCTCAATTTTTTAGTTTATGTTAGTTTTTTGTTATGGAAAAATATGGTTATAGCTTTTTTTTTGTTATGTTTAGTTCATGTCAATTGGATAAAAGTTCAAAATGCGTGCAAAATGCAAGCGGAA

Coding sequence (CDS)

ATGGCAATGGCCGGTTATAGCCCCACTGTGCCCTCACCCCTTGCCATGGCCCGCACTTCTTCAGTGCATCCTCTGGACCTTTCTTCCCTTTTCGCCGTCAGGCCGATTGCTGCCTCTTCCACCACCCACATCTTCTCTTTATGCCACCCCTTAACTCTGCAGCGCAGGGGAGGGAGGTCTATCAATTGGGTCGACCTTAATTTTAGAAGAGAATCTAGGGTTCATTTGGTTGTGGCTGCTTTAGCTGCGGAAATTGAAGTGGCTGAGGTTGTGGATGAGAATGGAGAGGAGAATGATGGATTAGCTGCTTCAATTGCGCCCAAGATTAAGAGGGGAAAGGCTGCATTGCCTCTTAAGAGGGACAGGACCAGATCAAAGAGGTTCCTGGAAATTCAAAAATTGAGGGAAAGTAAAAAGGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAACGTCTAAGACGAAATTCGTGGAAACCGCCGAAGCCCACTTCCGATTAAACATCGATCCCAAATATAACGATCAACAGCTGAGAGCAACAGTAAATCTTCCCAAGGGAACTGGACAGACAGTCAAGGTAGCTGTGCTTACTCAAGGTGAAAAATTCGACGAAGCGAAAAACGCAGGAGCTGATTTGGTTGGCGGTGAGGATTTGATAGAACAGATCAAAGGAGGTTTCATGGAATTTGATAAGCTAATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGTCTAGGTAAGCTTCTAGGACCTCGAGGACTGATGCCGAACCCAAAAGCTGGCACCGTTACGACAAATATACCTCAGGCTATAGCAGAATTCAAGCAGGGAAAAGTCGAATTCCGAGCGGATAAAACCGGGATTGTTCACTTACCTTTCGGGAAGGCAGACTTTTCGGAAGATGACCTCCTCGTGAACTTGCTTGCTGCAATAGTATAA

Protein sequence

MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRSINWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIAPKIKRGKAALPLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDDLLVNLLAAIV

Homology

[Close]

BLAST of Carg27320 vs. NCBI nr
Match: XP_022954232.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 598.6 bits (1542), Expect = 1.2e-167
Identity = 312/313 (99.68%), Postives = 312/313 (99.68%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRS 60
           MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASST HIFSLCHPLTLQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTAHIFSLCHPLTLQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIAPKIKRGKAALPLKR 120
           INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIAPKIKRGKAALPLKR
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIAPKIKRGKAALPLKR 120

Query: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300

Query: 301 SEDDLLVNLLAAI 314
           SEDDLLVNLLAAI
Sbjct: 301 SEDDLLVNLLAAI 313

[Close]

BLAST of Carg27320 vs. NCBI nr
Match: XP_023549332.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 590.9 bits (1522), Expect = 2.6e-165
Identity = 308/313 (98.40%), Postives = 308/313 (98.40%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRS 60
           MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFA RPIAASST HIFSLCHPL LQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAARPIAASSTAHIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIAPKIKRGKAALPLKR 120
           INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASI PKIKRGKAALPLKR
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIVPKIKRGKAALPLKR 120

Query: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQ SKTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300

Query: 301 SEDDLLVNLLAAI 314
           SEDDLLVNLLAAI
Sbjct: 301 SEDDLLVNLLAAI 313

[Close]

BLAST of Carg27320 vs. NCBI nr
Match: XP_022991908.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 590.1 bits (1520), Expect = 4.4e-165
Identity = 307/313 (98.08%), Postives = 309/313 (98.72%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRS 60
           MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASST HIFSLCHPL LQRRGGRS
Sbjct: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTAHIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIAPKIKRGKAALPLKR 120
           INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGE+NDGLAASI PKIKRGKAALPLKR
Sbjct: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEDNDGLAASIVPKIKRGKAALPLKR 120

Query: 121 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRTRSKRFLEIQKLRESK+EYDLKTAISLLKQ SKTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRESKREYDLKTAISLLKQMSKTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 300

Query: 301 SEDDLLVNLLAAI 314
           SEDDLLVNLLAAI
Sbjct: 301 SEDDLLVNLLAAI 313

[Close]

BLAST of Carg27320 vs. NCBI nr
Match: XP_022152504.1 (50S ribosomal protein L1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 539.7 bits (1389), Expect = 6.8e-150
Identity = 284/314 (90.45%), Postives = 293/314 (93.31%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRS 60
           MAMA  SPT  S L MA TSSVHP D+ SL + RP+AASST  IFSLCHPLT+QRRGGRS
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEEN-DGLAASIAPKIKRGKAALPLK 120
           INWVDLNFRRESR HLVVAALAAEIEVAEVV+ENGEE   GLA S+ PK+KRGKAALPLK
Sbjct: 61  INWVDLNFRRESRDHLVVAALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQ S TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAI 314
           FSEDDLLVNLLAA+
Sbjct: 301 FSEDDLLVNLLAAV 314

[Close]

BLAST of Carg27320 vs. NCBI nr
Match: XP_004135947.1 (PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus] >KGN45094.1 Ribosomal protein [Cucumis sativus])

HSP 1 Score: 522.3 bits (1344), Expect = 1.1e-144
Identity = 277/314 (88.22%), Postives = 288/314 (91.72%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRS 60
           MAMA  +PT+ S L MA TSSVHP D SSL + RPIAASST +IFSLCHPL LQRRGGRS
Sbjct: 1   MAMATCNPTLHSSLTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEE-NDGLAASIAPKIKRGKAALPLK 120
           INWVDL F RE R HLVVAALAAEIEV E V+ENGEE N G A S+ PKIK+GKAALPLK
Sbjct: 61  INWVDLKFGRECRDHLVVAALAAEIEVDEDVEENGEEGNGGTATSVLPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQTS TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEK DEAKNAGADLVGG+DLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKLDEAKNAGADLVGGKDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAI 314
           FSEDDLLVNLL+AI
Sbjct: 301 FSEDDLLVNLLSAI 314

[Close]

BLAST of Carg27320 vs. TAIR10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 352.8 bits (904), Expect = 2.1e-97
Identity = 185/244 (75.82%), Postives = 208/244 (85.25%), Query Frame = 0


Query: 70  RESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIAPKIKRGKAALPLKRDRTRSKRFL 129
           R S    +V+A+AAE   A++  E   E    A    PK K+GKAAL LKRDRTRSKRFL
Sbjct: 61  RASNHKFIVSAVAAE---ADLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDRTRSKRFL 120

Query: 130 EIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGT 189
           EIQKLRE+KKEYD+ TAISLLKQT+ T+FVE+ EAHFRLNIDPKYNDQQLRATV+LPKGT
Sbjct: 121 EIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGT 180

Query: 190 GQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGK 249
           GQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASPDMM KVA LGK
Sbjct: 181 GQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGK 240

Query: 250 LLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDDLLVNL 309
           +LGPRGLMPNPKAGTVT NIPQAI EFK+GKVEFRADKTGIVH+PFGK +F+E+DLL+N 
Sbjct: 241 ILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINF 300

Query: 310 LAAI 314
           LAA+
Sbjct: 301 LAAV 301

[Close]

BLAST of Carg27320 vs. TAIR10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 149.4 bits (376), Expect = 3.6e-36
Identity = 80/179 (44.69%), Postives = 117/179 (65.36%), Query Frame = 0


Query: 133 KLRESKKE-YDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQ 192
           +L+  KK  +DL  AI  +K  +K KF ET EAH RL I+   ++  +R T+ LP    +
Sbjct: 179 ELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKK 238

Query: 193 TVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQI-KGGFMEFDKLIASPDMMPKVASLGKL 252
            VKVA   +G   ++AK AGAD+VGG +LIE+I K G ++FD+ +A+P MMP+V  + ++
Sbjct: 239 DVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRI 298

Query: 253 LGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDDLLVNL 310
           L   GLMPNPK G+VT ++ +A+ + K G  +FR DKT I+H+P GK  FSE+ L  N+
Sbjct: 299 LNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENV 357

[Close]

BLAST of Carg27320 vs. Swiss-Prot
Match: sp|Q9LY66|RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.9e-96
Identity = 185/244 (75.82%), Postives = 208/244 (85.25%), Query Frame = 0


Query: 70  RESRVHLVVAALAAEIEVAEVVDENGEENDGLAASIAPKIKRGKAALPLKRDRTRSKRFL 129
           R S    +V+A+AAE   A++  E   E    A    PK K+GKAAL LKRDRTRSKRFL
Sbjct: 61  RASNHKFIVSAVAAE---ADLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDRTRSKRFL 120

Query: 130 EIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGT 189
           EIQKLRE+KKEYD+ TAISLLKQT+ T+FVE+ EAHFRLNIDPKYNDQQLRATV+LPKGT
Sbjct: 121 EIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGT 180

Query: 190 GQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGK 249
           GQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASPDMM KVA LGK
Sbjct: 181 GQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGK 240

Query: 250 LLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDDLLVNL 309
           +LGPRGLMPNPKAGTVT NIPQAI EFK+GKVEFRADKTGIVH+PFGK +F+E+DLL+N 
Sbjct: 241 ILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINF 300

Query: 310 LAAI 314
           LAA+
Sbjct: 301 LAAV 301

[Close]

BLAST of Carg27320 vs. Swiss-Prot
Match: sp|Q9LE95|RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.7e-91
Identity = 187/303 (61.72%), Postives = 221/303 (72.94%), Query Frame = 0


Query: 14  LAMARTSSVHPLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRSINWVDLNFRRESR 73
           L  A +S  +  D S     +P+  +S     SLC  LTL +R    + WVD   +++S 
Sbjct: 11  LCYASSSFQYQQDPSFQTHFKPLLLNS-----SLCR-LTLNQRERSCLKWVDFTSQKQSP 70

Query: 74  VHL---VVAALAAEIEVAEVVDENGEENDGLAASIAPKIKRGKAALPLKRDRTRSKRFLE 133
             +   V+AA+                          K K+GKAALPLK DRTRSKRFLE
Sbjct: 71  KSVSFRVLAAVXXXXXXXXXXXXXXXXXXXXXXXSPTKPKKGKAALPLKSDRTRSKRFLE 130

Query: 134 IQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTG 193
           IQKLRE K+EYDLKTA+SL+KQ S TKFVETAEAHFRLNIDPKYNDQQLRATV+LPKGTG
Sbjct: 131 IQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTG 190

Query: 194 QTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKL 253
           +TVK+AVL QG+K DEAK AGAD+VGGE+LIEQIKGGFM+FDKLIA+ DMM KVASLG++
Sbjct: 191 KTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRI 250

Query: 254 LGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDDLLVNLL 313
           LGPRGLMP PKAGTVT N+ QA+ EFK+GKVEFR DKTGIVH+PFGK +F E+DLL+NL 
Sbjct: 251 LGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLF 307

[Close]

BLAST of Carg27320 vs. Swiss-Prot
Match: sp|P49208|RK1_PEA (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPL1 PE=2 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 6.8e-77
Identity = 147/168 (87.50%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 109 IKRGKAALPLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRL 168
           +++GK    LK DR RSKRFLEIQKLRE KKEYDLKTAISL+K+T+KTKFVET EAHFRL
Sbjct: 41  LRQGKLHWRLKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRL 100

Query: 169 NIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGF 228
           NIDPKYNDQQLRATV+LPKGTG+ +KVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGF
Sbjct: 101 NIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGF 160

Query: 229 MEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEF 277
           MEFDKLIASPDMMPKVASLGK+LGPRGLMPNPKAGTVT NIPQAIAEF
Sbjct: 161 MEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEF 208

[Close]

BLAST of Carg27320 vs. Swiss-Prot
Match: sp|B0JNQ5|RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 6.2e-62
Identity = 123/187 (65.78%), Postives = 150/187 (80.21%), Query Frame = 0


Query: 125 SKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLRATVN 184
           S+R  + Q   E+ K Y+   A++LLK+ +  KF ETAEAH RL IDPKY DQQLR TV+
Sbjct: 6   SRRLRDAQAKVEN-KAYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVS 65

Query: 185 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 244
           LPKGTG+TV+VAV+T+GEK  EA NAGAD+VG E+LIE+I  G M+F+ LIA+PDMMPKV
Sbjct: 66  LPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKV 125

Query: 245 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDD 304
           A LG+ LGPRGLMP+PK GTVTT++  AIAEFK GK+EFRAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAED 185

Query: 305 LLVNLLA 312
           LLVNL A
Sbjct: 186 LLVNLKA 191

[Close]

BLAST of Carg27320 vs. Swiss-Prot
Match: sp|Q3MA18|RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.4e-61
Identity = 123/187 (65.78%), Postives = 148/187 (79.14%), Query Frame = 0


Query: 125 SKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLRATVN 184
           S+R  E+Q   E  +EY    A+SLLK+T+  KF E AEAH RL IDPKY DQQLR TV 
Sbjct: 6   SRRLRELQAKVED-REYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVA 65

Query: 185 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 244
           LPKGTGQ V+VAV+ +GEK  EA NAGAD+ G E+LI++I+ G M+FDKLIA+PD+MP+V
Sbjct: 66  LPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVMPQV 125

Query: 245 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADFSEDD 304
           A LGK+LGPRGLMP+PK GTVT +I  AIAEFK GK+EFRAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPED 185

Query: 305 LLVNLLA 312
           LLVNL A
Sbjct: 186 LLVNLKA 191

[Close]

BLAST of Carg27320 vs. TrEMBL
Match: tr|A0A0A0K886|A0A0A0K886_CUCSA (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 7.4e-145
Identity = 277/314 (88.22%), Postives = 288/314 (91.72%), Query Frame = 0


Query: 1   MAMAGYSPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRS 60
           MAMA  +PT+ S L MA TSSVHP D SSL + RPIAASST +IFSLCHPL LQRRGGRS
Sbjct: 1   MAMATCNPTLHSSLTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRVHLVVAALAAEIEVAEVVDENGEE-NDGLAASIAPKIKRGKAALPLK 120
           INWVDL F RE R HLVVAALAAEIEV E V+ENGEE N G A S+ PKIK+GKAALPLK
Sbjct: 61  INWVDLKFGRECRDHLVVAALAAEIEVDEDVEENGEEGNGGTATSVLPKIKKGKAALPLK 120

Query: 121 RDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQTS TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240
           RATVNLPKGTGQTVKVAVLTQGEK DEAKNAGADLVGG+DLIEQIKGGFMEFDKLIASPD
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGEKLDEAKNAGADLVGGKDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVE+RADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEDDLLVNLLAAI 314
           FSEDDLLVNLL+AI
Sbjct: 301 FSEDDLLVNLLSAI 314

[Close]

BLAST of Carg27320 vs. TrEMBL
Match: tr|A0A1S3TKD3|A0A1S3TKD3_VIGRR (Ribosomal protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106756342 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 4.9e-112
Identity = 231/313 (73.80%), Postives = 252/313 (80.51%), Query Frame = 0


Query: 7   SPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRSINWVDL 66
           S T P  L +A     HP DLSS       +    +  FS C PL L+     S  WV  
Sbjct: 3   SCTTPPSLMLA-----HPQDLSSSLRFFSHSQRPLSRTFSFC-PLVLK----SSSKWVRF 62

Query: 67  NFRRESR---VHLVVAALAAEIEVAEVVDENGEENDGLA---ASIAPKIKRGKAALPLKR 126
           +FR E +    H VVAALAAE+E+AE VD+  +  DG A   A    K K+GKAALPLKR
Sbjct: 63  SFRAEPKSRTSHAVVAALAAEVELAETVDDTADGVDGSAPTDAVATVKPKKGKAALPLKR 122

Query: 127 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLR 186
           DR+RSKRFLEIQ+LRE KKEYDLKTAISL+KQT+KTKFVET EAHFRLNIDPKYNDQQLR
Sbjct: 123 DRSRSKRFLEIQQLRERKKEYDLKTAISLVKQTAKTKFVETVEAHFRLNIDPKYNDQQLR 182

Query: 187 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 246
           ATVNLPKGTG+ VKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 183 ATVNLPKGTGKPVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 242

Query: 247 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 306
           MPKVASLGK+LGPRGLMPNPKAGTVT NIPQAIAEFKQGKVE+RADKTGIVHLPFGKADF
Sbjct: 243 MPKVASLGKILGPRGLMPNPKAGTVTPNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 302

Query: 307 SEDDLLVNLLAAI 314
           +E+DLLVNLLAA+
Sbjct: 303 TEEDLLVNLLAAV 305

[Close]

BLAST of Carg27320 vs. TrEMBL
Match: tr|A0A0L9V854|A0A0L9V854_PHAAN (Ribosomal protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan08g207300 PE=3 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 5.4e-111
Identity = 229/313 (73.16%), Postives = 251/313 (80.19%), Query Frame = 0


Query: 7   SPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRSINWVDL 66
           S T P  L +A     HP DLSS       +    +   S C PL L+     S  WV  
Sbjct: 3   SCTTPPSLMLA-----HPQDLSSSLRFFSHSQRPLSRTLSFC-PLVLK----SSSKWVRF 62

Query: 67  NFRRESR---VHLVVAALAAEIEVAEVVDENGEENDGLA---ASIAPKIKRGKAALPLKR 126
           +FR E +    H VVAALAAE+E+AE VD+  +  DG A   A    K K+GKAALPLKR
Sbjct: 63  SFRAEPKSRTSHAVVAALAAEVELAETVDDTADGVDGSAPTDAVATVKPKKGKAALPLKR 122

Query: 127 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLR 186
           DR+RSKRFLEIQ+LRE KKEYDLKTAISL+K+T+KTKFVET EAHFRLNIDPKYNDQQLR
Sbjct: 123 DRSRSKRFLEIQQLRERKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLR 182

Query: 187 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 246
           ATVNLPKGTG+ VKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 183 ATVNLPKGTGKPVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 242

Query: 247 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 306
           MPKVASLGK+LGPRGLMPNPKAGTVT NIPQAIAEFKQGKVE+RADKTGIVHLPFGKADF
Sbjct: 243 MPKVASLGKILGPRGLMPNPKAGTVTPNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 302

Query: 307 SEDDLLVNLLAAI 314
           +E+DLLVNLLAA+
Sbjct: 303 TEEDLLVNLLAAV 305

[Close]

BLAST of Carg27320 vs. TrEMBL
Match: tr|A0A0S3SEN3|A0A0S3SEN3_PHAAN (Ribosomal protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.06G261300 PE=3 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 5.4e-111
Identity = 229/313 (73.16%), Postives = 251/313 (80.19%), Query Frame = 0


Query: 7   SPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRSINWVDL 66
           S T P  L +A     HP DLSS       +    +   S C PL L+     S  WV  
Sbjct: 3   SCTTPPSLMLA-----HPQDLSSSLRFFSHSQRPLSRTLSFC-PLVLK----SSSKWVRF 62

Query: 67  NFRRESR---VHLVVAALAAEIEVAEVVDENGEENDGLA---ASIAPKIKRGKAALPLKR 126
           +FR E +    H VVAALAAE+E+AE VD+  +  DG A   A    K K+GKAALPLKR
Sbjct: 63  SFRAEPKSRTSHAVVAALAAEVELAETVDDTADGVDGSAPTDAVATVKPKKGKAALPLKR 122

Query: 127 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLR 186
           DR+RSKRFLEIQ+LRE KKEYDLKTAISL+K+T+KTKFVET EAHFRLNIDPKYNDQQLR
Sbjct: 123 DRSRSKRFLEIQQLRERKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLR 182

Query: 187 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 246
           ATVNLPKGTG+ VKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 183 ATVNLPKGTGKPVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 242

Query: 247 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 306
           MPKVASLGK+LGPRGLMPNPKAGTVT NIPQAIAEFKQGKVE+RADKTGIVHLPFGKADF
Sbjct: 243 MPKVASLGKILGPRGLMPNPKAGTVTPNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 302

Query: 307 SEDDLLVNLLAAI 314
           +E+DLLVNLLAA+
Sbjct: 303 TEEDLLVNLLAAV 305

[Close]

BLAST of Carg27320 vs. TrEMBL
Match: tr|V7ADT7|V7ADT7_PHAVU (Ribosomal protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G011500g PE=3 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 9.2e-111
Identity = 227/313 (72.52%), Postives = 250/313 (79.87%), Query Frame = 0


Query: 7   SPTVPSPLAMARTSSVHPLDLSSLFAVRPIAASSTTHIFSLCHPLTLQRRGGRSINWVDL 66
           S T P  L +A     HP DLSS       + S  +  FS C PL L+     S  WV  
Sbjct: 3   SCTTPPSLMLA-----HPQDLSSSLRFFSHSHSPLSRTFSFC-PLVLK----PSSKWVHF 62

Query: 67  NFRRESR---VHLVVAALAAEIEVAEVVD---ENGEENDGLAASIAPKIKRGKAALPLKR 126
            F+R+ +    H +VAALAAE+E+ E VD   E  EE+  +      K K+GKAALPLKR
Sbjct: 63  TFQRDPKSRTSHALVAALAAEVELPETVDDTAEGVEESGPVDTLTTAKPKKGKAALPLKR 122

Query: 127 DRTRSKRFLEIQKLRESKKEYDLKTAISLLKQTSKTKFVETAEAHFRLNIDPKYNDQQLR 186
           DRTRSKRFLEIQKLRE KKEYDLKTA+SL+K+T KTKFVET EAHFRLNIDPKYNDQQLR
Sbjct: 123 DRTRSKRFLEIQKLRERKKEYDLKTAVSLVKETGKTKFVETVEAHFRLNIDPKYNDQQLR 182

Query: 187 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 246
           ATVNLPKGTG+ VKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM
Sbjct: 183 ATVNLPKGTGKPVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDM 242

Query: 247 MPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEFRADKTGIVHLPFGKADF 306
           MPKVASLGK+LGPRGLMPNPKAGTVTTNIP+AIAEFKQGKVE+RADKTGIVHLPFGK DF
Sbjct: 243 MPKVASLGKILGPRGLMPNPKAGTVTTNIPEAIAEFKQGKVEYRADKTGIVHLPFGKVDF 302

Query: 307 SEDDLLVNLLAAI 314
           +E+DLLVNLLAA+
Sbjct: 303 TEEDLLVNLLAAV 305

The following BLAST results are available for this feature:

BLAST of Carg27320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954232.1	1.2e-167	99.68	50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata]	[more]
XP_023549332.1	2.6e-165	98.40	50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022991908.1	4.4e-165	98.08	50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022152504.1	6.8e-150	90.45	50S ribosomal protein L1, chloroplastic-like [Momordica charantia]	[more]
XP_004135947.1	1.1e-144	88.22	PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus] >KGN45...	[more]

BLAST of Carg27320 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G63490.1	2.1e-97	75.82	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	3.6e-36	44.69	Ribosomal protein L1p/L10e family	[more]

BLAST of Carg27320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LY66\|RK1_ARATH	3.9e-96	75.82	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ...	[more]
sp\|Q9LE95\|RK1_SPIOL	1.7e-91	61.72	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=...	[more]
sp\|P49208\|RK1_PEA	6.8e-77	87.50	50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=R...	[more]
sp\|B0JNQ5\|RL1_MICAN	6.2e-62	65.78	50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]
sp\|Q3MA18\|RL1_ANAVT	1.4e-61	65.78	50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) O...	[more]

BLAST of Carg27320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K886\|A0A0A0K886_CUCSA	7.4e-145	88.22	Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1	[more]
tr\|A0A1S3TKD3\|A0A1S3TKD3_VIGRR	4.9e-112	73.80	Ribosomal protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106756342 PE=3 SV=...	[more]
tr\|A0A0L9V854\|A0A0L9V854_PHAAN	5.4e-111	73.16	Ribosomal protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan08g207300 PE=3 SV=...	[more]
tr\|A0A0S3SEN3\|A0A0S3SEN3_PHAAN	5.4e-111	73.16	Ribosomal protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.06G261300...	[more]
tr\|V7ADT7\|V7ADT7_PHAVU	9.2e-111	72.52	Ribosomal protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G011500g PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0015934	large ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR023674	Ribosomal_L1-like
IPR023673	Ribosomal_L1_CS
IPR028364	Ribosomal_L1/biogenesis
IPR005878	Ribosom_L1_bac-type
IPR016095	Ribosomal_L1_3-a/b-sand

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27320-RA	Carg27320-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.190.20		coord: 141..187 e-value: 6.2E-68 score: 230.3 coord: 280..313 e-value: 6.2E-68 score: 230.3
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 107..313
None	No IPR available	PANTHER	PTHR23105:SF54	39S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL	coord: 107..313
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	G3DSA:3.40.50.790		coord: 188..279 e-value: 6.2E-68 score: 230.3
IPR005878	Ribosomal protein L1, bacterial-type	TIGRFAM	TIGR01169	TIGR01169	coord: 124..313 e-value: 6.3E-81 score: 269.0
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 150..313 e-value: 2.6E-42 score: 144.7
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 143..313 e-value: 3.08617E-61 score: 195.095
IPR023673	Ribosomal protein L1, conserved site	PROSITE	PS01199	RIBOSOMAL_L1	coord: 241..259
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	SSF56808	Ribosomal protein L1	coord: 127..313

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27320	Csa7G420870	Cucumber (Chinese Long) v2	carcuB0884
Carg27320	MELO3C023582	Melon (DHL92) v3.5.1	carmeB0858
Carg27320	CSPI07G18910	Wild cucumber (PI 183967)	carcpiB0904
Carg27320	Cucsa.128170	Cucumber (Gy14) v1	carcgyB0991
Carg27320	Lsi02G025450	Bottle gourd (USVL1VR-Ls)	carlsiB789
Carg27320	CsGy7G017330	Cucumber (Gy14) v2	carcgybB0858
Carg27320	MELO3C023582.2	Melon (DHL92) v3.6.1	carmedB0868
Carg27320	CsaV3_7G030740	Cucumber (Chinese Long) v3	carcucB0908
Carg27320	Bhi09G000586	Wax gourd	carwgoB1015

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None