Carg27308 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27308
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MFP1 attachment factor 1
Location	Cucurbita_argyrosperma_scaffold_409 : 23031 .. 25681 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTTCTTCAAGCTGCCGTTCATGGCGGTGGCCTTGCTGCTGCTGCTCCTCCTCTCAGGCGACATTAATGGAGAAGCCAATACCAATACCAATACCGTGAAGCTACCAAGCCAAGCAACCAAAGACGGCAACAGACAAATGAAAGAGCAACGTAGGATGAGGCCATTCCATGTGTTCATGTCCAGTAAGAGGAAGGTCCCAAATGCTTCAGATCCACTCCACAATCGTTGAGTTTTCTTCCCCTTTTCTCTTCCTTTTCTTTCTCCTTTCATCGGTATATATAAACAAAATCTTCATACTTTTATATTATATATATGTAACAACATTTTGGTTGTCTTTGGATGGCTGCCTGCCTGGCTGCCTGGCTGTTCGATCATACAAGAAGCTTTTATGTGATTAGTTTTTACGGCGATTGTTTAATCTGGTATGGTGTTAAGTGTGGCTGTGGCTTGTCTTATGGGATAACGCAGCTGGATATTTCATTTCTTTGGAAGATAATGGAAAGTTACAATTTTATGAGATAGGATGAGGTTTGTTAGTTTTAGTTTTATTTTGACTTTAAGTGATTGATTTTGAGATTAGTTTTTTTTCCCTCAAATCTAACCCCCCCCCCCCTTGGGAGGGAAGAAATTTATAAATATATTTTTTTTTAATTTTTACATAGGCGGGTCCTTATACTGAACTTTGGAGCATATTCCATGACCATTTCATGTATCAAATATTAAATAATGAATCTAGATAATATATTTGCTATCGTTACAATGATACATTAATAATTTAGTCCATATATCTACCAAATGAATTTGTTAATGTTTGGCCATATAATTAATGACGAATTAAGTTTTTTTTTTTTACTTAGAGTAGGACGTGTGTTTTTTTGCTTTAAAAGTCATGTGAGCATAGTGAATTTTTTAAGTTGAATTATAAATTTGATGTGACACTCAAGTAAAGAATCTGTACATAAATACCGAAACTATGTCTAAACAAGGATGATCTTGAGGATAAAATAACTAAAAAATGTCTTAAAAGAAGTGAAAATTACTATCTTTATTAATGAGGTGCATCTTATGTTTCGGTAGTTCAATCATAAGAATTTCATAATTAAGCGTGTTTTGCTTAGACCAATTTTATGTTGGGTAAATTTGAATCGATAATAGGGCTCCGAAGGTTGAAAACCAACTTTTGGAACAATTTTATTGTTAGAATAGGAACAACGTTTGTCAGTTAGACAATGTTTTGTCTTGTTCATAAGTTTGGAGTAGCTCTTGTAAGAATAGAATTTATGAACCGTATGTCAAAAATTTAGTAGTACTAGTCAACTAATTATACTTAAATTGCTACAATAATTATAATATAATAATCATACGGACACTATTATGATAATAATTTCCTTACTCAAGAAGCAAACAGATGAAAAATAAAAAGTTATAAACTATAGTTACCACAAACGAGCGCACAACCTCAAGTTCTTACGACATAGTCAATTAGAAGTTGAGGAGTAAGCTTACGACAATTATTGGTTCTATACAAGTTACATGCAGACCACCACCATTATTTCAATAGAACTTAAAATAACTTAAAAACTTTTAAGAATATTTTTAGAATGTATAATAAGATATTAATAATTGAGAATATGGACGTGGACGTGGAAAATCAAAGAACCGATTATACCTGCCAAGCCACTCGGTACCAAATTCAGCATATGGCCATCAACGCAGCGCACTCGCGACGCCGTTATCAGCCGTCTGATCGAAACCCTTTCCTCCCCTTCAATGTTCTCTAAGCGATACGGCACTATTCCAGCGGACGAAGCTGCTTTTGTCGCGCTAAGCATCGAGGAGGAGGCGTATGCCATTACCAATGGCTTCCCTGCCACCATGGACGACGGCATCGACATTCTCCAGGCCTCTACTCTAAGCAGATCAGTAAGGGGATGCTTGAGGCGGTAAACCCGACTTTTGAAACTGAAACTTGAATATCTATCTGTTTGGTCTTAATTTTATTGCCCTGTTTGAGCTTCTTTTACTGGAGATCTGCTTGTTCATTATTTGTTCTTCTTGTGTTCTATGGTCTTAAATGCATGGAAAAATGGAAGCGTTTTTTTGCCTAGAGATTTCTTCATTGGTTAATTTAATGTGGCTTGAATCTTCTTTGTTTTCTTGGAATTGGAATCCTTCCATTGTTCCTCCATTAGCTAGGACTTGTCTCTCTAGAACTCTAATTAGTTGTTAGCCCAACAAAGCACCTAAACCCTTTGAATATTGTGTAGTCTCATTCATCATTGACTAAGAATTTGTGTTGAAGATAGTTTGTAATTTCTTGGAAGTGAATGACTCTATGAGATCTCACATAATCGGGGAAGAGAAGTATTCTTTATAAGGGTGTGGAATCCTTCCACTAGCCCACGATGTTTTAAAAATCTTGAGGGAAGCTTGGAAGAGAAATTTCAGAGAGGACAATATCTACTAGCGGTGGACTGTTATGGGTGTGCCAGCGAGGATGCTGGCCCCGAAGGGGAGTGGATGGTGAGATTTCATATCGATTCGAGAGAGGAACGAGTCTCCCAAAGGTGGGTGGATTGTGAGATCCCACATAGGTTGGAGAGGAAAACAAACATTCTTTACGAGGGTGTGAAAACTTCATCCTAG

mRNA sequence

ATGCGGTTCTTCAAGCTGCCGTTCATGGCGGTGGCCTTGCTGCTGCTGCTCCTCCTCTCAGGCGACATTAATGGAGAAGCCAATACCAATACCAATACCGTGAAGCTACCAAGCCAAGCAACCAAAGACGGCAACAGACAAATGAAAGAGCAACGTAGGATGAGGCCATTCCATGTGTTCATGTCCAGTAAGAGGAAGCGCACTCGCGACGCCGTTATCAGCCGTCTGATCGAAACCCTTTCCTCCCCTTCAATGTTCTCTAAGCGATACGGCACTATTCCAGCGGACGAAGCTGCTTTTGTCGCGCTAAGCATCGAGGAGGAGGCGTATGCCATTACCAATGGCTTCCCTGCCACCATGGACGACGGCATCGACATTCTCCAGGCCTCTACTCTAAGCAGATCAGGAAGCTTGGAAGAGAAATTTCAGAGAGGACAATATCTACTAGCGGTGGACTGTTATGGGTGTGCCAGCGAGGATGCTGGCCCCGAAGGGGAGTGGATGGTGAGATTTCATATCGATTCGAGAGAGGAACGAGTCTCCCAAAGGTGGGTGGATTGTGAGATCCCACATAGGTTGGAGAGGAAAACAAACATTCTTTACGAGGGTGTGAAAACTTCATCCTAG

Coding sequence (CDS)

ATGCGGTTCTTCAAGCTGCCGTTCATGGCGGTGGCCTTGCTGCTGCTGCTCCTCCTCTCAGGCGACATTAATGGAGAAGCCAATACCAATACCAATACCGTGAAGCTACCAAGCCAAGCAACCAAAGACGGCAACAGACAAATGAAAGAGCAACGTAGGATGAGGCCATTCCATGTGTTCATGTCCAGTAAGAGGAAGCGCACTCGCGACGCCGTTATCAGCCGTCTGATCGAAACCCTTTCCTCCCCTTCAATGTTCTCTAAGCGATACGGCACTATTCCAGCGGACGAAGCTGCTTTTGTCGCGCTAAGCATCGAGGAGGAGGCGTATGCCATTACCAATGGCTTCCCTGCCACCATGGACGACGGCATCGACATTCTCCAGGCCTCTACTCTAAGCAGATCAGGAAGCTTGGAAGAGAAATTTCAGAGAGGACAATATCTACTAGCGGTGGACTGTTATGGGTGTGCCAGCGAGGATGCTGGCCCCGAAGGGGAGTGGATGGTGAGATTTCATATCGATTCGAGAGAGGAACGAGTCTCCCAAAGGTGGGTGGATTGTGAGATCCCACATAGGTTGGAGAGGAAAACAAACATTCTTTACGAGGGTGTGAAAACTTCATCCTAG

Protein sequence

MRFFKLPFMAVALLLLLLLSGDINGEANTNTNTVKLPSQATKDGNRQMKEQRRMRPFHVFMSSKRKRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGIDILQASTLSRSGSLEEKFQRGQYLLAVDCYGCASEDAGPEGEWMVRFHIDSREERVSQRWVDCEIPHRLERKTNILYEGVKTSS

Homology

[Close]

BLAST of Carg27308 vs. NCBI nr
Match: XP_022951889.1 (MFP1 attachment factor 1-like [Cucurbita moschata])

HSP 1 Score: 175.3 bits (443), Expect = 2.2e-40
Identity = 97/118 (82.20%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 34  VKLPSQATKDGNRQMKEQRRMRPFHVFMSS----------------KRKRTRDAVISRLI 93
           VKLPSQATKDGNRQMKEQRRMRPFHVFMS                   +RTRDAVISRLI
Sbjct: 25  VKLPSQATKDGNRQMKEQRRMRPFHVFMSKPIIPAKPLGTKFSIWPSTQRTRDAVISRLI 84

Query: 94  ETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGIDILQASTLSRS 136
           ETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNG PATMDDGIDILQASTLSRS
Sbjct: 85  ETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGSPATMDDGIDILQASTLSRS 142

[Close]

BLAST of Carg27308 vs. NCBI nr
Match: XP_004142879.1 (PREDICTED: MFP1 attachment factor 1-like [Cucumis sativus] >KGN62474.1 MFP1 attachment factor 1 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 2.5e-15
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           +RTRDAVISRLIETLS+PS+ SKR+GTIP DEAA VA  IEEEAYA  NG P ++DDGI+
Sbjct: 42  QRTRDAVISRLIETLSTPSILSKRFGTIPPDEAATVAQLIEEEAYAYANGSPPSVDDGIE 101

Query: 126 ILQ 129
           ILQ
Sbjct: 102 ILQ 104

[Close]

BLAST of Carg27308 vs. NCBI nr
Match: XP_008444590.1 (PREDICTED: MFP1 attachment factor 1 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 2.7e-14
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           +RTRDAVISRLIETLS+PS+ SKR+G IP DEAA VA  IEEEAYA  NG P ++DDG++
Sbjct: 42  QRTRDAVISRLIETLSTPSILSKRFGIIPPDEAANVARIIEEEAYASANGSPPSVDDGVE 101

Query: 126 ILQ 129
           ILQ
Sbjct: 102 ILQ 104

[Close]

BLAST of Carg27308 vs. NCBI nr
Match: XP_022131922.1 (MFP1 attachment factor 1-like [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-13
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           +RTRDAVISRLIETLS+PS+ SKRYGTIP DEAA  A  IEEEAY      PAT DDGI+
Sbjct: 38  QRTRDAVISRLIETLSTPSILSKRYGTIPPDEAAAAARLIEEEAYLAAGVSPATEDDGIE 97

Query: 126 ILQ 129
           ILQ
Sbjct: 98  ILQ 100

[Close]

BLAST of Carg27308 vs. NCBI nr
Match: XP_022961994.1 (MFP1 attachment factor 1-like [Cucurbita moschata])

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-13
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           +RTRDAV SRLIETLS+PS+ SKRYGTIP + AA +A  IE+EAYA  +G P T+DDGI+
Sbjct: 40  QRTRDAVTSRLIETLSTPSILSKRYGTIPPEAAATIARVIEDEAYATADGSPTTVDDGIE 99

Query: 126 ILQ 129
           ILQ
Sbjct: 100 ILQ 102

[Close]

BLAST of Carg27308 vs. TAIR10
Match: AT5G43070.1 (WPP domain protein 1)

HSP 1 Score: 71.6 bits (174), Expect = 6.3e-13
Identity = 37/64 (57.81%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           ++TRDAVI+RLIETLS+ S+ SKR+G++ ++EA+ VA SIE+EAYAI +      DDGI+
Sbjct: 49  QKTRDAVINRLIETLSTESILSKRFGSLESEEASSVAKSIEDEAYAIASATVFGDDDGIE 108

Query: 126 ILQA 130
           IL+A
Sbjct: 109 ILKA 112

[Close]

BLAST of Carg27308 vs. TAIR10
Match: AT1G47200.1 (WPP domain protein 2)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-12
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 40  ATKDGNRQMKEQRRMRPFHVFMS--SKRKRTRDAVISRLIETLSSPSMFSKRYGTIPADE 99
           A+KD +   + +   +P  + +      ++TRDAV++RLIETLS+ S+ SKRYGT+ +D+
Sbjct: 37  ASKDTDLTKEAESEKKPGGISLRIWPPTQKTRDAVLNRLIETLSTESILSKRYGTLKSDD 96

Query: 100 AAFVALSIEEEAYAITNGFPATMDDGIDILQASTLSRSGSLEEKFQRGQYLLA------- 159
           A  VA  IEEEAY + +   ++ DDGI IL+  +   S  + E  +              
Sbjct: 97  ATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEISKRMLESVKARSNASVGNGSVED 156

Query: 160 --VDCYGCASEDAGPEGE 167
              D    + +DAGP  E
Sbjct: 157 ANTDASEVSKDDAGPASE 174

[Close]

BLAST of Carg27308 vs. TAIR10
Match: AT5G27940.1 (WPP domain protein 3)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           +++RD V++ +I+TLS+ S+ S +YGTI  +EA+ VA SIEE+AY I + F ++  DGI 
Sbjct: 58  QKSRDYVVNSMIKTLSTDSILSYKYGTIKPEEASAVAKSIEEKAYDIASRFVSS--DGIK 117

Query: 126 ILQASTLSRSGSLEE 141
            L+   +  S  + E
Sbjct: 118 NLEVYGIETSERMIE 130

[Close]

BLAST of Carg27308 vs. Swiss-Prot
Match: sp|Q9M7N6|MAF1_SOLLC (MFP1 attachment factor 1 OS=Solanum lycopersicum OX=4081 GN=MAF1 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-13
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           +RTRDAVI+RLIE+LS+PS+ SKRYGT+P DEA+  A  IEEEA+A      +  DDGI+
Sbjct: 33  QRTRDAVINRLIESLSTPSILSKRYGTLPQDEASETARLIEEEAFAAAGSTASDADDGIE 92

Query: 126 ILQ 129
           ILQ
Sbjct: 93  ILQ 95

[Close]

BLAST of Carg27308 vs. Swiss-Prot
Match: sp|Q9FMH6|WPP1_ARATH (WPP domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=WPP1 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-11
Identity = 37/64 (57.81%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           ++TRDAVI+RLIETLS+ S+ SKR+G++ ++EA+ VA SIE+EAYAI +      DDGI+
Sbjct: 49  QKTRDAVINRLIETLSTESILSKRFGSLESEEASSVAKSIEDEAYAIASATVFGDDDGIE 108

Query: 126 ILQA 130
           IL+A
Sbjct: 109 ILKA 112

[Close]

BLAST of Carg27308 vs. Swiss-Prot
Match: sp|Q9C500|WPP2_ARATH (WPP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=WPP2 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-11
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 40  ATKDGNRQMKEQRRMRPFHVFMS--SKRKRTRDAVISRLIETLSSPSMFSKRYGTIPADE 99
           A+KD +   + +   +P  + +      ++TRDAV++RLIETLS+ S+ SKRYGT+ +D+
Sbjct: 37  ASKDTDLTKEAESEKKPGGISLRIWPPTQKTRDAVLNRLIETLSTESILSKRYGTLKSDD 96

Query: 100 AAFVALSIEEEAYAITNGFPATMDDGIDILQASTLSRSGSLEEKFQRGQYLLA------- 159
           A  VA  IEEEAY + +   ++ DDGI IL+  +   S  + E  +              
Sbjct: 97  ATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEISKRMLESVKARSNASVGNGSVED 156

Query: 160 --VDCYGCASEDAGPEGE 167
              D    + +DAGP  E
Sbjct: 157 ANTDASEVSKDDAGPASE 174

[Close]

BLAST of Carg27308 vs. Swiss-Prot
Match: sp|Q0WQ91|WPP3_ARATH (WPP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=WPP3 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.2e-06
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           +++RD V++ +I+TLS+ S+ S +YGTI  +EA+ VA SIEE+AY I + F ++  DGI 
Sbjct: 58  QKSRDYVVNSMIKTLSTDSILSYKYGTIKPEEASAVAKSIEEKAYDIASRFVSS--DGIK 117

Query: 126 ILQASTLSRSGSLEE 141
            L+   +  S  + E
Sbjct: 118 NLEVYGIETSERMIE 130

[Close]

BLAST of Carg27308 vs. TrEMBL
Match: tr|A0A0A0LNB9|A0A0A0LNB9_CUCSA (MFP1 attachment factor 1 OS=Cucumis sativus OX=3659 GN=Csa_2G355000 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           +RTRDAVISRLIETLS+PS+ SKR+GTIP DEAA VA  IEEEAYA  NG P ++DDGI+
Sbjct: 42  QRTRDAVISRLIETLSTPSILSKRFGTIPPDEAATVAQLIEEEAYAYANGSPPSVDDGIE 101

Query: 126 ILQ 129
           ILQ
Sbjct: 102 ILQ 104

[Close]

BLAST of Carg27308 vs. TrEMBL
Match: tr|A0A1S3BBH7|A0A1S3BBH7_CUCME (MFP1 attachment factor 1 OS=Cucumis melo OX=3656 GN=LOC103487862 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           +RTRDAVISRLIETLS+PS+ SKR+G IP DEAA VA  IEEEAYA  NG P ++DDG++
Sbjct: 42  QRTRDAVISRLIETLSTPSILSKRFGIIPPDEAANVARIIEEEAYASANGSPPSVDDGVE 101

Query: 126 ILQ 129
           ILQ
Sbjct: 102 ILQ 104

[Close]

BLAST of Carg27308 vs. TrEMBL
Match: tr|F6GZW5|F6GZW5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g09670 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-12
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           +RTRDAVI+RLIETL++PS+ +KRYGT+PADEA+  A  +EEEAYA   G P   D+GI+
Sbjct: 48  QRTRDAVINRLIETLTTPSVLAKRYGTMPADEASATARLVEEEAYAAAGGSPNADDEGIE 107

Query: 126 ILQ 129
           ILQ
Sbjct: 108 ILQ 110

[Close]

BLAST of Carg27308 vs. TrEMBL
Match: tr|A0A2P2IQ98|A0A2P2IQ98_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.8e-12
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           +RTRDAVI+RLIETLS+PS+ SKRYGTIP +EA   A SIEEEA+ + N   +  DDG++
Sbjct: 47  QRTRDAVITRLIETLSAPSVLSKRYGTIPQEEADAAARSIEEEAFGVANAAASAEDDGLE 106

Query: 126 ILQ 129
           ILQ
Sbjct: 107 ILQ 109

[Close]

BLAST of Carg27308 vs. TrEMBL
Match: tr|A0A2R6R3B8|A0A2R6R3B8_ACTCH (MFP1 attachment factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11761 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.4e-12
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 66  KRTRDAVISRLIETLSSPSMFSKRYGTIPADEAAFVALSIEEEAYAITNGFPATMDDGID 125
           +RTR+AV++RLIETLS+PS+ SKRYGT+PADEA+  A  IE+EA+A T+      DDGI+
Sbjct: 53  QRTREAVVNRLIETLSAPSVLSKRYGTLPADEASTTARRIEDEAFAATSASATADDDGIE 112

Query: 126 ILQ 129
           ILQ
Sbjct: 113 ILQ 115

The following BLAST results are available for this feature:

BLAST of Carg27308 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951889.1	2.2e-40	82.20	MFP1 attachment factor 1-like [Cucurbita moschata]	[more]
XP_004142879.1	2.5e-15	74.60	PREDICTED: MFP1 attachment factor 1-like [Cucumis sativus] >KGN62474.1 MFP1 atta...	[more]
XP_008444590.1	2.7e-14	71.43	PREDICTED: MFP1 attachment factor 1 [Cucumis melo]	[more]
XP_022131922.1	1.0e-13	73.02	MFP1 attachment factor 1-like [Momordica charantia]	[more]
XP_022961994.1	1.4e-13	68.25	MFP1 attachment factor 1-like [Cucurbita moschata]	[more]

BLAST of Carg27308 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43070.1	6.3e-13	57.81	WPP domain protein 1	[more]
AT1G47200.1	1.8e-12	34.06	WPP domain protein 2	[more]
AT5G27940.1	1.8e-07	41.33	WPP domain protein 3	[more]

BLAST of Carg27308 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M7N6\|MAF1_SOLLC	2.7e-13	61.90	MFP1 attachment factor 1 OS=Solanum lycopersicum OX=4081 GN=MAF1 PE=1 SV=1	[more]
sp\|Q9FMH6\|WPP1_ARATH	1.1e-11	57.81	WPP domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=WPP1 PE=1 SV=...	[more]
sp\|Q9C500\|WPP2_ARATH	3.3e-11	34.06	WPP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=WPP2 PE=1 SV=...	[more]
sp\|Q0WQ91\|WPP3_ARATH	3.2e-06	41.33	WPP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=WPP3 PE=2 SV=...	[more]

BLAST of Carg27308 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNB9\|A0A0A0LNB9_CUCSA	1.6e-15	74.60	MFP1 attachment factor 1 OS=Cucumis sativus OX=3659 GN=Csa_2G355000 PE=4 SV=1	[more]
tr\|A0A1S3BBH7\|A0A1S3BBH7_CUCME	1.8e-14	71.43	MFP1 attachment factor 1 OS=Cucumis melo OX=3656 GN=LOC103487862 PE=4 SV=1	[more]
tr\|F6GZW5\|F6GZW5_VITVI	2.2e-12	63.49	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g09670 PE=4 SV=...	[more]
tr\|A0A2P2IQ98\|A0A2P2IQ98_RHIMU	3.8e-12	63.49	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A2R6R3B8\|A0A2R6R3B8_ACTCH	8.4e-12	61.90	MFP1 attachment factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038214	WPP_sf
IPR025265	WPP_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27308-RA	Carg27308-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025265	WPP domain	PFAM	PF13943	WPP	coord: 66..131 e-value: 7.6E-17 score: 61.4
IPR038214	WPP domain superfamily	GENE3D	G3DSA:1.10.246.200		coord: 63..140 e-value: 7.4E-17 score: 63.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..49
None	No IPR available	PANTHER	PTHR34362	FAMILY NOT NAMED	coord: 30..129

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27308	Cla022604	Watermelon (97103) v1	carwmB0457
Carg27308	Csa2G355000	Cucumber (Chinese Long) v2	carcuB0490
Carg27308	MELO3C010830	Melon (DHL92) v3.5.1	carmeB0465
Carg27308	ClCG08G016240	Watermelon (Charleston Gray)	carwcgB0447
Carg27308	CSPI02G18750	Wild cucumber (PI 183967)	carcpiB0496
Carg27308	CmaCh05G001600	Cucurbita maxima (Rimu)	carcmaB0639
Carg27308	CmaCh12G005760	Cucurbita maxima (Rimu)	carcmaB0638
Carg27308	CmoCh05G001610	Cucurbita moschata (Rifu)	carcmoB0621
Carg27308	Lsi08G015030	Bottle gourd (USVL1VR-Ls)	carlsiB416
Carg27308	Cp4.1LG11g01290	Cucurbita pepo (Zucchini)	carcpeB0643
Carg27308	CsGy2G018650	Cucumber (Gy14) v2	carcgybB0467
Carg27308	MELO3C010830.2	Melon (DHL92) v3.6.1	carmedB0468
Carg27308	CsaV3_2G026380	Cucumber (Chinese Long) v3	carcucB0493
Carg27308	Cla97C08G159900	Watermelon (97103) v2	carwmbB0482
Carg27308	Bhi04G000367	Wax gourd	carwgoB0557

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27308	Silver-seed gourd	carcarB221
Carg27308	Cucumber (Gy14) v1	carcgyB0529
Carg27308	Cucurbita moschata (Rifu)	carcmoB0620
Carg27308	Cucurbita pepo (Zucchini)	carcpeB0644