Carg27272 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27272
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone chaperone
Location	Cucurbita_argyrosperma_scaffold_190 : 109264 .. 111541 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAATGAATCTCTAAATCTCCCGCCAATTTGGGCATTCCATTTCCCTCCAAAAATTCCAGCGGCGGCGATTTATATATAATCGACGAACTCAGTTGTTGGTTTTTCATTTGGGATCCATCTTCAACTTCAATAGTGCCTGTAATCGGCCATCGTTATTCCGTTCGGTCGTTGATGAGTGATCCCCGAATTAGGGTTAAGATCGATCAATTTGGGGAATCAATTACAGAGCTCCGTTCCGGTTTCTGGCGATGAGTGCCGTCAACATCACTAACGTCACCGTCTTGGATAACCCTGCCGCATTTCTGAATCCATTTCAGTTCGAGATCTCATATGAGTGCTTAACTCCGCTTAAAGACGGTAATCTGTTTTGTTTTGATAGATTGCATCAGTTTGGATGATGATTTGAACAGTCGATGTTGGGGTAATTAGATGTTGTCTTGAAATTATTTTATTGGATTCATCAGATTAAGAGTAGGATATTCCTAGTGTTTCGACTTGTAAACTGGATATTTGCGTTTGGTTAATGATTTGTTTGCAATCGTTTCTCTACTCACATTTTGCGGAAGAAAACTTTGTGCCCCTGATTTCCTGTATACTGTTCGGATTTAAAATTAAGTTCAAATCTCGTAACCTAACGCCTGTATTCTAACGATGTGTTCTTTCATGCTTAAATCCTGATTTTGATGCTTGAGCCTTGGTAATTTGTGATAGAAATTTGTCATTTCTACTCAGCTCTTTTGATATTGTTATCTTTGAAGGGTGTTTGTATGTATACTCTTTATATTAAAGATTCATATATGCCTTTTAACTCCTAATGCTCATTTCAAAAGTTCTTGTTCATCCTCTTTGGATCATTTTTTCTTGTGGGTGGAGGTTTGGTTTAGAACGTTGAATACTAGATATAGTTTAATCAACACTAATTTTGTGACTTAATCTATCATGTCAAGGCCAATCTCATAATTTGTGTTAATCATGATGTTTGGATTTTTCTTGAGTATTTAGTCCATAGTTCATTAGATGGTCGGGTAAGAGTTGAGTGTTACTAGAAAACCCAGATGATAATAGAACAAAAAATTATGTGCTCAAACTCTAGTAATTATTATTCTTTTTGGAGATTGATATTAAGAGTCACTTTTCTAGACTTACTAATTTTGATCCTAGATGTGACCAAAGTATTAAAAATTTTAAGTATAAGATCAATAATCTATTAGCTTAAACTATAAATTATACTCAATCTATTGCTCGTGATTTTGGATTTACGGGTCATTAATTTGATAAGAAACACTGCATTGTCATTTCTTCTCCAGTAATATAAATAATTATGTTTATTTTGTAAATTTCTCAAGTTATTAGCTCAATGATCGATGTATTCTATTTTGGGTTTTGACTCGAATCAACTTTAATGACATGTTTTCTGTTTGATTATTCTAAAGATCTAGAATGGAAACTCACCTATGTCGGATCTGCCGAGGATGAAACCTATGACCAGCTTTTGGAGAGTGTGCTCGTTGGACCTGTTAACGTTGGCAATTACCGTTTTGTTCTTCAGGTAATATATGCCGAGTCCTTCACTAGTGACAGTTTTAGCATGGCTTAAAAAGAGATCAAATTCAAGTTAATATTTGAGTGGTTCATACAATTTAATGATAGATTATCATATTTTTACTTCGAGGGGATTCAAACTTTTATCTTCTTGATCCGAAAAAAAATAGTCTTTGTCAAACATGGATCTATAGAAATACCTGATGAAATTTCACTCGTGTTAGACTCAAATTTCTGCTCAAACTGGAATCTGACTGTTCTGAACTGGTACATTTGTTGGGATTGGAAATTTTGCAGGCAGACCCTCCGGATCCGTCTAAAATCCGGGAAGAAGACATCACGGGGGTCACAGTACTGTTGTTAACATGTTCATACATGGGACAAGAATTTATAAGAGTAGGATATTATGTGAACAACGATTATGATGATGAACAGCTTCGTGAGGAACCTCCACCAAAAGTTTTGGTGGAAAGGATCCAAAGAAACATTCTTGCTGACAAGCCCAGAGTCACAAAGTTCCCAATCAATTTTCATCCGGAGAACTCTGAACATGGTGGAGAGCAAAATTCGTCTCCACCAGCTGAAGCTATCAACAACGAGGAAGAAGAAGAAGAAGAATTGCAGGCATCGCCATTGCCATCGCCATCACCACCCCCATCAGCTGCATCTGATGAACCATCTCTGGAACAGGATGCCGTTGATACTGAAGCTCAGCCCTCAGTCACGGCAAACTAA

mRNA sequence

ACAATGAATCTCTAAATCTCCCGCCAATTTGGGCATTCCATTTCCCTCCAAAAATTCCAGCGGCGGCGATTTATATATAATCGACGAACTCAGTTGTTGGTTTTTCATTTGGGATCCATCTTCAACTTCAATAGTGCCTGTAATCGGCCATCGTTATTCCGTTCGGTCGTTGATGAGTGATCCCCGAATTAGGGTTAAGATCGATCAATTTGGGGAATCAATTACAGAGCTCCGTTCCGGTTTCTGGCGATGAGTGCCGTCAACATCACTAACGTCACCGTCTTGGATAACCCTGCCGCATTTCTGAATCCATTTCAGTTCGAGATCTCATATGAGTGCTTAACTCCGCTTAAAGACGATCTAGAATGGAAACTCACCTATGTCGGATCTGCCGAGGATGAAACCTATGACCAGCTTTTGGAGAGTGTGCTCGTTGGACCTGTTAACGTTGGCAATTACCGTTTTGTTCTTCAGGCAGACCCTCCGGATCCGTCTAAAATCCGGGAAGAAGACATCACGGGGGTCACAGTACTGTTGTTAACATGTTCATACATGGGACAAGAATTTATAAGAGTAGGATATTATGTGAACAACGATTATGATGATGAACAGCTTCGTGAGGAACCTCCACCAAAAGTTTTGGTGGAAAGGATCCAAAGAAACATTCTTGCTGACAAGCCCAGAGTCACAAAGTTCCCAATCAATTTTCATCCGGAGAACTCTGAACATGGTGGAGAGCAAAATTCGTCTCCACCAGCTGAAGCTATCAACAACGAGGAAGAAGAAGAAGAAGAATTGCAGGCATCGCCATTGCCATCGCCATCACCACCCCCATCAGCTGCATCTGATGAACCATCTCTGGAACAGGATGCCGTTGATACTGAAGCTCAGCCCTCAGTCACGGCAAACTAA

Coding sequence (CDS)

ATGAGTGCCGTCAACATCACTAACGTCACCGTCTTGGATAACCCTGCCGCATTTCTGAATCCATTTCAGTTCGAGATCTCATATGAGTGCTTAACTCCGCTTAAAGACGATCTAGAATGGAAACTCACCTATGTCGGATCTGCCGAGGATGAAACCTATGACCAGCTTTTGGAGAGTGTGCTCGTTGGACCTGTTAACGTTGGCAATTACCGTTTTGTTCTTCAGGCAGACCCTCCGGATCCGTCTAAAATCCGGGAAGAAGACATCACGGGGGTCACAGTACTGTTGTTAACATGTTCATACATGGGACAAGAATTTATAAGAGTAGGATATTATGTGAACAACGATTATGATGATGAACAGCTTCGTGAGGAACCTCCACCAAAAGTTTTGGTGGAAAGGATCCAAAGAAACATTCTTGCTGACAAGCCCAGAGTCACAAAGTTCCCAATCAATTTTCATCCGGAGAACTCTGAACATGGTGGAGAGCAAAATTCGTCTCCACCAGCTGAAGCTATCAACAACGAGGAAGAAGAAGAAGAAGAATTGCAGGCATCGCCATTGCCATCGCCATCACCACCCCCATCAGCTGCATCTGATGAACCATCTCTGGAACAGGATGCCGTTGATACTGAAGCTCAGCCCTCAGTCACGGCAAACTAA

Protein sequence

MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDEQLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQNSSPPAEAINNEEEEEEELQASPLPSPSPPPSAASDEPSLEQDAVDTEAQPSVTAN

Homology

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BLAST of Carg27272 vs. NCBI nr
Match: XP_023520975.1 (probable histone chaperone ASF1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 366.3 bits (939), Expect = 7.2e-98
Identity = 209/220 (95.00%), Postives = 209/220 (95.00%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQXXXXXXXXXXXXXXXX 180
           QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQ           XXXXX
Sbjct: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQNSSPPVEAINNXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXDEPSLEQDAVDTEAQPSVTAN 221
           XXXXXXXXXXXXXXXXXXXDEPSLEQDAVDTEAQPSVTAN
Sbjct: 181 XXXXXXXXXXXXXXXXXXXDEPSLEQDAVDTEAQPSVTAN 220

[Close]

BLAST of Carg27272 vs. NCBI nr
Match: XP_022953035.1 (probable histone chaperone ASF1A [Cucurbita moschata])

HSP 1 Score: 364.0 bits (933), Expect = 3.6e-97
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQXXXXXXXXXXXXXXXX 180
           QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQXXXXXXXXXXXXXXXX
Sbjct: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXDEPSLEQDAVDTEAQPSVTA 220
           XXXXXXXXXXXXXXXXXXXDEPSLEQDAVDTEAQPSVTA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXDEPSLEQDAVDTEAQPSVTA 219

[Close]

BLAST of Carg27272 vs. NCBI nr
Match: XP_023520819.1 (probable histone chaperone ASF1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 361.7 bits (927), Expect = 1.8e-96
Identity = 210/221 (95.02%), Postives = 210/221 (95.02%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQ-XXXXXXXXXXXXXXX 180
           QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQ           XXXXX
Sbjct: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQNSSPPAEAINNXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXDEPSLEQDAVDTEAQPSVTAN 221
           XXXXXXXXXXXXXXXXXXXXDEPSLEQDAVDTEAQPSVTAN
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXDEPSLEQDAVDTEAQPSVTAN 221

[Close]

BLAST of Carg27272 vs. NCBI nr
Match: XP_022989985.1 (probable histone chaperone ASF1A [Cucurbita maxima])

HSP 1 Score: 350.9 bits (899), Expect = 3.1e-93
Identity = 206/219 (94.06%), Postives = 206/219 (94.06%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGE--QXXXXXXXXXXXXXX 180
           QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGE            XXXXX
Sbjct: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEPNSSPPAETINNXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXDEPSLEQDAVDTEAQPSV 218
           XXXXXXXXXXXXXXXXXXXXX EPSLEQDAVDTEAQPSV
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXEPSLEQDAVDTEAQPSV 219

[Close]

BLAST of Carg27272 vs. NCBI nr
Match: XP_023522744.1 (histone chaperone ASF1B-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.9 bits (873), Expect = 3.3e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQ 165
           QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQ
Sbjct: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQ 164

[Close]

BLAST of Carg27272 vs. TAIR10
Match: AT5G38110.1 (anti- silencing function 1b)

HSP 1 Score: 298.1 bits (762), Expect = 4.4e-81
Identity = 141/163 (86.50%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MS++NITNVTVLDNPA F+NPFQFEISYECLT LKDDLEWKL YVGSAEDETYDQ+LESV
Sbjct: 1   MSSINITNVTVLDNPAPFVNPFQFEISYECLTSLKDDLEWKLIYVGSAEDETYDQVLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQAD PDP KIREEDI GVTVLLLTCSYM QEFIRVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADSPDPLKIREEDIIGVTVLLLTCSYMDQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGE 164
           QLREEPP KVL++++QRNIL DKPRVTKFPINFHPEN +  G+
Sbjct: 121 QLREEPPTKVLIDKVQRNILTDKPRVTKFPINFHPENEQTLGD 163

[Close]

BLAST of Carg27272 vs. TAIR10
Match: AT1G66740.1 (ASF1 like histone chaperone)

HSP 1 Score: 285.8 bits (730), Expect = 2.3e-77
Identity = 133/156 (85.26%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSA+ ITNV VL NPA F++PFQFEISYECL  LKDDLEWKL YVGSAEDETYDQLLESV
Sbjct: 1   MSAIKITNVAVLHNPAPFVSPFQFEISYECLNSLKDDLEWKLIYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVNVGNYRFV QADPPDPSKI+EEDI GVTVLLLTCSYMGQEF+RVGYYVNNDY+DE
Sbjct: 61  LVGPVNVGNYRFVFQADPPDPSKIQEEDIIGVTVLLLTCSYMGQEFLRVGYYVNNDYEDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPE 157
           QL+EEPP KVL++++QRNIL+DKPRVTKFPI+FHPE
Sbjct: 121 QLKEEPPTKVLIDKVQRNILSDKPRVTKFPIDFHPE 156

[Close]

BLAST of Carg27272 vs. Swiss-Prot
Match: sp|Q9LS09|ASF1B_ARATH (Histone chaperone ASF1B OS=Arabidopsis thaliana OX=3702 GN=ASF1B PE=1 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 7.9e-80
Identity = 141/163 (86.50%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MS++NITNVTVLDNPA F+NPFQFEISYECLT LKDDLEWKL YVGSAEDETYDQ+LESV
Sbjct: 1   MSSINITNVTVLDNPAPFVNPFQFEISYECLTSLKDDLEWKLIYVGSAEDETYDQVLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQAD PDP KIREEDI GVTVLLLTCSYM QEFIRVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADSPDPLKIREEDIIGVTVLLLTCSYMDQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGE 164
           QLREEPP KVL++++QRNIL DKPRVTKFPINFHPEN +  G+
Sbjct: 121 QLREEPPTKVLIDKVQRNILTDKPRVTKFPINFHPENEQTLGD 163

[Close]

BLAST of Carg27272 vs. Swiss-Prot
Match: sp|Q9C9M6|ASF1A_ARATH (Probable histone chaperone ASF1A OS=Arabidopsis thaliana OX=3702 GN=ASF1A PE=1 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 4.1e-76
Identity = 133/156 (85.26%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSA+ ITNV VL NPA F++PFQFEISYECL  LKDDLEWKL YVGSAEDETYDQLLESV
Sbjct: 1   MSAIKITNVAVLHNPAPFVSPFQFEISYECLNSLKDDLEWKLIYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVNVGNYRFV QADPPDPSKI+EEDI GVTVLLLTCSYMGQEF+RVGYYVNNDY+DE
Sbjct: 61  LVGPVNVGNYRFVFQADPPDPSKIQEEDIIGVTVLLLTCSYMGQEFLRVGYYVNNDYEDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPE 157
           QL+EEPP KVL++++QRNIL+DKPRVTKFPI+FHPE
Sbjct: 121 QLKEEPPTKVLIDKVQRNILSDKPRVTKFPIDFHPE 156

[Close]

BLAST of Carg27272 vs. Swiss-Prot
Match: sp|Q9V464|ASF1_DROME (Histone chaperone asf1 OS=Drosophila melanogaster OX=7227 GN=asf1 PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.1e-56
Identity = 99/153 (64.71%), Postives = 124/153 (81.05%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           M+ V+ITNV VLDNP++F NPFQFE+++EC+  LK+DLEWK+ YVGSAE E +DQ+L+++
Sbjct: 1   MAKVHITNVVVLDNPSSFFNPFQFELTFECIEELKEDLEWKMIYVGSAESEEHDQVLDTI 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
            VGPV  G + FV QADPPD SKI E D  GVT++LLTCSY GQEF+RVGYYVNNDY D 
Sbjct: 61  YVGPVPEGRHIFVFQADPPDVSKIPEPDAVGVTIVLLTCSYRGQEFVRVGYYVNNDYADP 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINF 154
           ++RE PP K L E++ RNILA KPRVT+F IN+
Sbjct: 121 EMRENPPTKPLFEKLTRNILASKPRVTRFKINW 153

[Close]

BLAST of Carg27272 vs. Swiss-Prot
Match: sp|Q69DB9|AS1AA_XENLA (Histone chaperone asf1a-A OS=Xenopus laevis OX=8355 GN=asf1aa PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-52
Identity = 97/159 (61.01%), Postives = 121/159 (76.10%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           M+ V + NV VLDNP+ F NPFQFEI++EC+  L +DLEWK+ YVGSAE E YDQ+L+SV
Sbjct: 1   MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPV  G + FV QAD P+P  I + D  GVTV+L+TC+Y GQEFIRVGYYVNN+Y + 
Sbjct: 61  LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSE 160
           +LRE PP K    ++QRNILA  PRVT+F IN+  EN+E
Sbjct: 121 ELRENPPVKPDFSKLQRNILASNPRVTRFHINWE-ENTE 158

[Close]

BLAST of Carg27272 vs. Swiss-Prot
Match: sp|Q9DAP7|ASF1B_MOUSE (Histone chaperone ASF1B OS=Mus musculus OX=10090 GN=Asf1b PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.4e-52
Identity = 98/161 (60.87%), Postives = 124/161 (77.02%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           M+ V++ NV VL+NP+ F +PF+FEIS+EC   L DDLEWK+ YVGSAE E +DQ+L+SV
Sbjct: 1   MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALSDDLEWKIIYVGSAESEEFDQILDSV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPV  G + FV QAD P+PS I E D  GVTV+L+TC+Y GQEFIRVGYYVNN+Y D 
Sbjct: 61  LVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYPDP 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINF--HPENSE 160
           +LRE PPPK    ++QRNILA  PRVT+F IN+  +P++ E
Sbjct: 121 ELRENPPPKPDFSQLQRNILASNPRVTRFHINWDNNPDSLE 161

[Close]

BLAST of Carg27272 vs. TrEMBL
Match: tr|A0A1S3CSW5|A0A1S3CSW5_CUCME (probable histone chaperone ASF1A OS=Cucumis melo OX=3656 GN=LOC103504582 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.7e-87
Identity = 196/219 (89.50%), Postives = 204/219 (93.15%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGEQXXXXXXXXXXXXXXXX 180
           QLREEPPPKVL++R+QRNILADKPRVTKFPINFHPENSEHG         XXXXXXXXXX
Sbjct: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENSEHGA--------XXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXDEPSLEQDAVDTEAQPSVTA 220
           XXXXXXXXXXXXXXXXXXX    L+Q+A+D+  QPSVTA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXLDQEAIDSGPQPSVTA 211

[Close]

BLAST of Carg27272 vs. TrEMBL
Match: tr|A0A0A0KUZ5|A0A0A0KUZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576630 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 2.2e-87
Identity = 156/163 (95.71%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLT LKDDLEWKLTYVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTSLKDDLEWKLTYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGP+NVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPINVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGE 164
           QLREEPPPKVL++R+QRNILADKPRVTKFPINFHPENSEHG E
Sbjct: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENSEHGAE 163

[Close]

BLAST of Carg27272 vs. TrEMBL
Match: tr|V4W628|V4W628_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016840mg PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.2e-85
Identity = 153/161 (95.03%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKL YVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDI GVTVLLLTCSY+GQEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHG 162
           QLREEPPPKVL++R+QRNILADKPRVTKFPINFHPEN+EHG
Sbjct: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENNEHG 161

[Close]

BLAST of Carg27272 vs. TrEMBL
Match: tr|A0A067FNL9|A0A067FNL9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029646mg PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.2e-85
Identity = 153/161 (95.03%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKL YVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVNVGNYRFVLQADPPDPSKIREEDI GVTVLLLTCSY+GQEF+RVGYYVNNDYDDE
Sbjct: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHG 162
           QLREEPPPKVL++R+QRNILADKPRVTKFPINFHPEN+EHG
Sbjct: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENNEHG 161

[Close]

BLAST of Carg27272 vs. TrEMBL
Match: tr|A0A2P4JN70|A0A2P4JN70_QUESU (Histone chaperone asf1b OS=Quercus suber OX=58331 GN=CFP56_49831 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 3.6e-85
Identity = 152/163 (93.25%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESV 60
           MSAVNITNV VLDNPAAFLNPFQFEISYECLTPLKDDLEWKL YVGSAEDETYDQLLESV
Sbjct: 1   MSAVNITNVAVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESV 60

Query: 61  LVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFIRVGYYVNNDYDDE 120
           LVGPVN+GNYRFVLQADPPDPSKIR+EDI GVTVLLLTCSY+GQEFIRVGYYVNNDYDDE
Sbjct: 61  LVGPVNIGNYRFVLQADPPDPSKIRDEDIIGVTVLLLTCSYLGQEFIRVGYYVNNDYDDE 120

Query: 121 QLREEPPPKVLVERIQRNILADKPRVTKFPINFHPENSEHGGE 164
           QLREEPPPKVL++R+QRNILADKPRVTKFPINFHPEN+EHG E
Sbjct: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENNEHGEE 163

The following BLAST results are available for this feature:

BLAST of Carg27272 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520975.1	7.2e-98	95.00	probable histone chaperone ASF1A [Cucurbita pepo subsp. pepo]	[more]
XP_022953035.1	3.6e-97	100.00	probable histone chaperone ASF1A [Cucurbita moschata]	[more]
XP_023520819.1	1.8e-96	95.02	probable histone chaperone ASF1A [Cucurbita pepo subsp. pepo]	[more]
XP_022989985.1	3.1e-93	94.06	probable histone chaperone ASF1A [Cucurbita maxima]	[more]
XP_023522744.1	3.3e-90	100.00	histone chaperone ASF1B-like, partial [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg27272 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G38110.1	4.4e-81	86.50	anti- silencing function 1b	[more]
AT1G66740.1	2.3e-77	85.26	ASF1 like histone chaperone	[more]

BLAST of Carg27272 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LS09\|ASF1B_ARATH	7.9e-80	86.50	Histone chaperone ASF1B OS=Arabidopsis thaliana OX=3702 GN=ASF1B PE=1 SV=1	[more]
sp\|Q9C9M6\|ASF1A_ARATH	4.1e-76	85.26	Probable histone chaperone ASF1A OS=Arabidopsis thaliana OX=3702 GN=ASF1A PE=1 S...	[more]
sp\|Q9V464\|ASF1_DROME	6.1e-56	64.71	Histone chaperone asf1 OS=Drosophila melanogaster OX=7227 GN=asf1 PE=1 SV=1	[more]
sp\|Q69DB9\|AS1AA_XENLA	1.8e-52	61.01	Histone chaperone asf1a-A OS=Xenopus laevis OX=8355 GN=asf1aa PE=1 SV=1	[more]
sp\|Q9DAP7\|ASF1B_MOUSE	2.4e-52	60.87	Histone chaperone ASF1B OS=Mus musculus OX=10090 GN=Asf1b PE=1 SV=1	[more]

BLAST of Carg27272 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSW5\|A0A1S3CSW5_CUCME	1.7e-87	89.50	probable histone chaperone ASF1A OS=Cucumis melo OX=3656 GN=LOC103504582 PE=4 SV...	[more]
tr\|A0A0A0KUZ5\|A0A0A0KUZ5_CUCSA	2.2e-87	95.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576630 PE=4 SV=1	[more]
tr\|V4W628\|V4W628_9ROSI	1.2e-85	95.03	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016840mg PE=4 ...	[more]
tr\|A0A067FNL9\|A0A067FNL9_CITSI	1.2e-85	95.03	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029646mg PE=4 SV=1	[more]
tr\|A0A2P4JN70\|A0A2P4JN70_QUESU	3.6e-85	93.25	Histone chaperone asf1b OS=Quercus suber OX=58331 GN=CFP56_49831 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006333	chromatin assembly or disassembly

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR036747	ASF1-like_sf
IPR006818	ASF1-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27272-RA	Carg27272-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006818	Histone chaperone ASF1-like	PFAM	PF04729	ASF1_hist_chap	coord: 1..153 e-value: 2.8E-69 score: 231.9
IPR006818	Histone chaperone ASF1-like	PANTHER	PTHR12040	ANTI-SILENCING PROTEIN 1	coord: 1..179
IPR036747	Histone chaperone ASF1-like superfamily	GENE3D	G3DSA:2.60.40.1490		coord: 1..170 e-value: 8.7E-78 score: 261.9
IPR036747	Histone chaperone ASF1-like superfamily	SUPERFAMILY	SSF101546	ASF1-like	coord: 1..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..172
None	No IPR available	PANTHER	PTHR12040:SF0	HISTONE CHAPERONE ASF1	coord: 1..179

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27272	Cla003905	Watermelon (97103) v1	carwmB0318
Carg27272	Csa5G576630	Cucumber (Chinese Long) v2	carcuB0357
Carg27272	MELO3C005330	Melon (DHL92) v3.5.1	carmeB0334
Carg27272	ClCG01G006020	Watermelon (Charleston Gray)	carwcgB0320
Carg27272	CSPI05G19830	Wild cucumber (PI 183967)	carcpiB0361
Carg27272	Cucsa.280590	Cucumber (Gy14) v1	carcgyB0386
Carg27272	CmaCh04G020870	Cucurbita maxima (Rimu)	carcmaB0461
Carg27272	CmoCh04G021890	Cucurbita moschata (Rifu)	carcmoB0452
Carg27272	Lsi09G006370	Bottle gourd (USVL1VR-Ls)	carlsiB301
Carg27272	CsGy5G019330	Cucumber (Gy14) v2	carcgybB0340
Carg27272	MELO3C005330.2	Melon (DHL92) v3.6.1	carmedB0342
Carg27272	CsaV3_5G028660	Cucumber (Chinese Long) v3	carcucB0361
Carg27272	Cla97C01G006300	Watermelon (97103) v2	carwmbB0337
Carg27272	Bhi12G000753	Wax gourd	carwgoB0413

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27272	Cucurbita maxima (Rimu)	carcmaB0460
Carg27272	Cucurbita moschata (Rifu)	carcmoB0451
Carg27272	Cucurbita pepo (Zucchini)	carcpeB0458